Wall clock time and date at job start Tue Mar 31 2020 10:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99961 * 2 1 4 4 C 1.50699 * 109.47356 * 66.04318 * 3 2 1 5 5 C 1.38285 * 119.92769 * 89.99941 * 4 3 2 6 6 C 1.38106 * 120.07596 * 180.02562 * 5 4 3 7 7 C 1.38902 * 119.92487 * 359.97438 * 6 5 4 8 8 N 1.39677 * 120.07682 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99768 * 359.97438 * 8 7 6 10 10 C 1.46495 * 120.00418 * 180.02562 * 8 7 6 11 11 C 1.50702 * 109.47571 * 89.99958 * 10 8 7 12 12 H 1.08002 * 119.99446 * 359.97438 * 11 10 8 13 13 C 1.37871 * 120.00072 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99826 * 179.72119 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.38912 * 119.85150 * 0.25678 * 7 6 5 20 20 C 1.38099 * 119.92352 * 359.49263 * 19 7 6 21 21 C 1.46897 * 111.00120 * 236.04142 * 2 1 3 22 22 C 1.52996 * 109.47196 * 293.95481 * 21 2 1 23 23 H 1.09002 * 115.55124 * 330.72805 * 22 21 2 24 24 C 1.53008 * 117.49536 * 116.39379 * 22 21 2 25 25 C 1.52995 * 117.49829 * 185.01148 * 22 21 2 26 26 C 1.52997 * 117.50089 * 0.02562 * 25 22 21 27 27 C 1.53004 * 117.50135 * 145.02204 * 25 22 21 28 28 H 1.09006 * 109.46828 * 60.00062 * 1 2 3 29 29 H 1.09000 * 109.47633 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47547 * 300.00249 * 1 2 3 31 31 H 1.08999 * 109.47364 * 306.03969 * 3 2 1 32 32 H 1.09004 * 109.47322 * 186.03895 * 3 2 1 33 33 H 1.08002 * 119.96211 * 359.97438 * 5 4 3 34 34 H 1.08004 * 120.03466 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47816 * 270.00381 * 9 8 7 36 36 H 1.09008 * 109.47270 * 30.00169 * 9 8 7 37 37 H 1.09000 * 109.47529 * 150.00197 * 9 8 7 38 38 H 1.09000 * 109.47378 * 329.99617 * 10 8 7 39 39 H 1.09001 * 109.47153 * 209.99738 * 10 8 7 40 40 H 0.96999 * 120.00128 * 180.27192 * 14 13 11 41 41 H 1.08007 * 120.03840 * 179.72832 * 19 7 6 42 42 H 1.08002 * 119.96351 * 180.25872 * 20 19 7 43 43 H 1.08999 * 109.47106 * 53.95667 * 21 2 1 44 44 H 1.09001 * 109.47101 * 173.95768 * 21 2 1 45 45 H 1.09003 * 117.49667 * 214.98219 * 24 22 21 46 46 H 1.08997 * 117.49649 * 359.97438 * 24 22 21 47 47 H 1.08997 * 109.47400 * 59.99401 * 26 25 22 48 48 H 1.09001 * 109.47850 * 179.97438 * 26 25 22 49 49 H 1.09007 * 109.47245 * 299.99745 * 26 25 22 50 50 H 1.09007 * 109.46833 * 59.99936 * 27 25 22 51 51 H 1.08999 * 109.47698 * 179.97438 * 27 25 22 52 52 H 1.08999 * 109.46899 * 300.00626 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 6 2.4952 1.9640 2.3794 6 6 2.1694 2.5817 3.5709 7 6 0.9783 3.2875 3.6825 8 7 0.6453 3.9130 4.8862 9 6 1.5527 3.8245 6.0330 10 6 -0.6116 4.6564 5.0024 11 6 -1.7020 3.7293 5.4741 12 1 -1.4809 2.6900 5.6676 13 6 -2.9820 4.2076 5.6576 14 7 -3.9348 3.3972 6.0640 15 14 -3.3646 6.0050 5.3222 16 1 -3.1647 6.7937 6.5644 17 1 -2.4589 6.5142 4.2613 18 1 -4.7744 6.1358 4.8743 19 6 0.1161 3.3650 2.5961 20 6 0.4504 2.7493 1.4060 21 6 1.9955 -0.7661 -1.1375 22 6 1.6315 -2.2426 -0.9702 23 1 1.5316 -2.5886 0.0587 24 6 0.7063 -2.8652 -2.0178 25 6 2.1922 -3.2291 -1.9964 26 6 3.0745 -2.6636 -3.1112 27 6 2.5704 -4.6261 -1.5002 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.5612 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1081 33 1 3.4210 1.4147 2.2921 34 1 2.8400 2.5160 4.4150 35 1 1.3001 2.9478 6.6295 36 1 2.5797 3.7388 5.6780 37 1 1.4534 4.7211 6.6449 38 1 -0.8809 5.0690 4.0301 39 1 -0.4889 5.4677 5.7199 40 1 -4.8362 3.7328 6.1893 41 1 -0.8130 3.9093 2.6809 42 1 -0.2175 2.8127 0.5597 43 1 1.5612 -0.3874 -2.0627 44 1 3.0798 -0.6612 -1.1755 45 1 -0.0019 -3.6210 -1.6782 46 1 0.3567 -2.2227 -2.8259 47 1 3.9460 -2.1770 -2.6733 48 1 3.4005 -3.4740 -3.7631 49 1 2.5058 -1.9367 -3.6913 50 1 1.6896 -5.1142 -1.0829 51 1 2.9522 -5.2166 -2.3331 52 1 3.3383 -4.5430 -0.7312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827941093.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:45 Heat of formation + Delta-G solvation = 58.152324 kcal Electronic energy + Delta-G solvation = -26163.048002 eV Core-core repulsion = 22742.201713 eV Total energy + Delta-G solvation = -3420.846289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.47547 -38.90806 -36.96511 -35.26364 -32.62936 -30.73018 -30.55026 -29.40839 -28.33533 -28.05831 -27.22069 -26.55702 -24.60029 -22.91865 -21.67676 -21.34417 -20.81085 -19.54068 -18.79744 -16.94526 -16.65401 -15.96883 -15.51166 -15.31356 -14.97825 -14.47543 -14.38536 -14.14967 -13.91245 -13.78792 -13.54196 -13.19109 -13.03414 -12.95272 -12.78241 -12.62892 -12.40853 -12.24833 -12.16945 -11.83528 -11.61710 -11.58889 -11.55471 -11.46486 -11.44684 -11.19915 -10.94476 -10.66214 -10.63746 -10.29974 -9.98973 -9.94520 -9.70046 -9.57671 -8.88099 -8.65878 -8.30285 -8.19649 -6.39422 -6.13973 -4.13725 2.08326 2.19276 3.20896 3.29306 3.29956 3.48483 3.96556 4.07377 4.32298 4.49444 4.53848 4.59066 4.75429 4.85008 5.16031 5.16503 5.20313 5.26623 5.35097 5.36385 5.47458 5.51114 5.55110 5.59306 5.61785 5.65356 5.66271 5.67964 5.73619 5.74098 5.81015 5.85070 5.89329 5.95306 6.05599 6.07576 6.18281 6.22719 6.27733 6.32697 6.37020 6.56775 6.72769 6.76890 7.01795 7.06882 7.10899 7.20546 7.31530 7.52848 7.55797 8.05760 8.35083 8.52165 8.94127 9.45888 10.99167 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.002517 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.321113 B =11120.041955 C =11760.876257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.534 5.534 3 C 0.110 3.890 4 C -0.163 4.163 5 C -0.052 4.052 6 C -0.218 4.218 7 C 0.241 3.759 8 N -0.612 5.612 9 C 0.101 3.899 10 C 0.221 3.779 11 C -0.533 4.533 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.895 5.895 15 Si 0.872 3.128 16 H -0.275 1.275 17 H -0.265 1.265 18 H -0.284 1.284 19 C -0.187 4.187 20 C -0.066 4.066 21 C 0.087 3.913 22 C -0.133 4.133 23 H 0.112 0.888 24 C -0.176 4.176 25 C -0.130 4.130 26 C -0.114 4.114 27 C -0.114 4.114 28 H 0.019 0.981 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.031 0.969 39 H 0.023 0.977 40 H 0.265 0.735 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.030 0.970 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.056 0.944 51 H 0.057 0.943 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.260 -8.501 -15.822 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.258 5.258 3 C -0.016 4.016 4 C -0.166 4.166 5 C -0.071 4.071 6 C -0.241 4.241 7 C 0.135 3.865 8 N -0.318 5.318 9 C -0.043 4.043 10 C 0.099 3.901 11 C -0.571 4.571 12 H 0.094 0.906 13 C -0.131 4.131 14 N -0.533 5.533 15 Si 0.699 3.301 16 H -0.201 1.201 17 H -0.189 1.189 18 H -0.209 1.209 19 C -0.210 4.210 20 C -0.085 4.085 21 C -0.040 4.040 22 C -0.151 4.151 23 H 0.130 0.870 24 C -0.213 4.213 25 C -0.130 4.130 26 C -0.171 4.171 27 C -0.171 4.171 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.145 0.855 42 H 0.126 0.874 43 H 0.049 0.951 44 H 0.093 0.907 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.076 0.924 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.156 -8.610 -15.135 22.441 hybrid contribution -0.910 1.200 -0.657 1.643 sum 13.246 -7.410 -15.791 21.903 Atomic orbital electron populations 1.22435 0.87119 1.01825 1.01028 1.62001 1.08345 1.13584 1.41846 1.20827 0.99211 0.87145 0.94445 1.19137 0.97189 1.04552 0.95713 1.20488 0.98157 0.96572 0.91878 1.20558 0.98217 1.06344 0.99007 1.17892 0.92253 0.90240 0.86147 1.46692 1.21535 1.55019 1.08581 1.21477 0.92655 1.01374 0.88825 1.19668 0.81671 0.91789 0.96932 1.21477 0.92447 0.97955 1.45265 0.90569 1.24904 0.96120 0.97476 0.94583 1.69904 1.01871 1.35229 1.46304 0.86915 0.78153 0.85809 0.79247 1.20065 1.18943 1.20922 1.20782 1.01132 1.06448 0.92614 1.20654 0.95238 0.96034 0.96620 1.21629 0.99668 0.91235 0.91506 1.22453 1.03219 0.93354 0.96100 0.86963 1.23332 0.92394 1.03633 1.01897 1.21596 0.95436 0.96270 0.99715 1.21327 0.98930 1.00450 0.96438 1.21341 1.01442 0.93508 1.00808 0.96266 0.91637 0.90324 0.94956 0.90941 0.87221 0.86803 0.93745 0.92581 0.92136 0.95093 0.95940 0.92529 0.85483 0.87441 0.95141 0.90741 0.88994 0.89181 0.92175 0.92351 0.92603 0.92513 0.92355 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.97 60.06 0.54 0.85 16 2 N -0.53 -6.75 4.75 -244.38 -1.16 -7.91 16 3 C 0.11 1.40 5.11 -4.98 -0.03 1.38 16 4 C -0.16 -2.51 4.88 -104.59 -0.51 -3.02 16 5 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 6 C -0.22 -3.78 9.21 -39.38 -0.36 -4.14 16 7 C 0.24 4.82 6.55 -83.79 -0.55 4.27 16 8 N -0.61 -12.84 2.99 -181.00 -0.54 -13.38 16 9 C 0.10 1.73 10.23 59.85 0.61 2.34 16 10 C 0.22 5.20 4.02 -5.20 -0.02 5.18 16 11 C -0.53 -14.86 9.94 -34.44 -0.34 -15.21 16 12 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 13 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 14 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 15 Si 0.87 20.74 27.47 -169.99 -4.67 16.07 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.19 -3.72 9.20 -39.38 -0.36 -4.08 16 20 C -0.07 -1.12 7.95 -39.61 -0.32 -1.43 16 21 C 0.09 0.90 4.32 -3.83 -0.02 0.89 16 22 C -0.13 -1.30 4.46 -90.62 -0.40 -1.71 16 23 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 24 C -0.18 -1.55 9.47 -26.73 -0.25 -1.80 16 25 C -0.13 -1.08 2.70 -154.51 -0.42 -1.50 16 26 C -0.11 -0.83 8.86 37.16 0.33 -0.50 16 27 C -0.11 -0.85 9.85 37.16 0.37 -0.49 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.81 7.16 -51.93 -0.37 0.44 16 30 H 0.08 1.20 6.17 -51.93 -0.32 0.88 16 31 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 32 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16 33 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.11 1.78 6.14 -52.48 -0.32 1.45 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.81 6.20 -51.92 -0.32 0.49 16 37 H 0.06 0.97 7.89 -51.93 -0.41 0.56 16 38 H 0.03 0.74 5.26 -51.93 -0.27 0.46 16 39 H 0.02 0.52 7.32 -51.93 -0.38 0.14 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.13 2.72 6.15 -52.48 -0.32 2.40 16 42 H 0.11 1.63 8.03 -52.49 -0.42 1.21 16 43 H 0.03 0.31 7.85 -51.93 -0.41 -0.10 16 44 H 0.07 0.73 7.56 -51.93 -0.39 0.34 16 45 H 0.09 0.79 8.05 -51.93 -0.42 0.37 16 46 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 47 H 0.06 0.43 7.83 -51.93 -0.41 0.02 16 48 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 49 H 0.05 0.40 7.90 -51.92 -0.41 -0.01 16 50 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 51 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 52 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 404.95 15.07 6.10 6.10 Total: -1.00 -30.00 404.95 -11.07 -41.07 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -9.36 Total: 2.59 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -2.21 Total: -18.23 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.93 Total: -47.60 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.00 -11.07 -41.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827941093.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.224 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds