Wall clock time and date at job start Tue Mar 31 2020 10:55:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46894 * 110.99961 * 2 1
4 4 C 1.50699 * 109.47356 * 66.04318 * 3 2 1
5 5 C 1.38285 * 119.92769 * 89.99941 * 4 3 2
6 6 C 1.38106 * 120.07596 * 180.02562 * 5 4 3
7 7 C 1.38902 * 119.92487 * 359.97438 * 6 5 4
8 8 N 1.39677 * 120.07682 * 179.97438 * 7 6 5
9 9 C 1.46498 * 119.99768 * 359.97438 * 8 7 6
10 10 C 1.46495 * 120.00418 * 180.02562 * 8 7 6
11 11 C 1.50702 * 109.47571 * 89.99958 * 10 8 7
12 12 H 1.08002 * 119.99446 * 359.97438 * 11 10 8
13 13 C 1.37871 * 120.00072 * 180.02562 * 11 10 8
14 14 N 1.31516 * 119.99826 * 179.72119 * 13 11 10
15 15 Si 1.86800 * 120.00406 * 359.97438 * 13 11 10
16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11
17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11
18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11
19 19 C 1.38912 * 119.85150 * 0.25678 * 7 6 5
20 20 C 1.38099 * 119.92352 * 359.49263 * 19 7 6
21 21 C 1.46897 * 111.00120 * 236.04142 * 2 1 3
22 22 C 1.52996 * 109.47196 * 293.95481 * 21 2 1
23 23 H 1.09002 * 115.55124 * 330.72805 * 22 21 2
24 24 C 1.53008 * 117.49536 * 116.39379 * 22 21 2
25 25 C 1.52995 * 117.49829 * 185.01148 * 22 21 2
26 26 C 1.52997 * 117.50089 * 0.02562 * 25 22 21
27 27 C 1.53004 * 117.50135 * 145.02204 * 25 22 21
28 28 H 1.09006 * 109.46828 * 60.00062 * 1 2 3
29 29 H 1.09000 * 109.47633 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47547 * 300.00249 * 1 2 3
31 31 H 1.08999 * 109.47364 * 306.03969 * 3 2 1
32 32 H 1.09004 * 109.47322 * 186.03895 * 3 2 1
33 33 H 1.08002 * 119.96211 * 359.97438 * 5 4 3
34 34 H 1.08004 * 120.03466 * 179.97438 * 6 5 4
35 35 H 1.09003 * 109.47816 * 270.00381 * 9 8 7
36 36 H 1.09008 * 109.47270 * 30.00169 * 9 8 7
37 37 H 1.09000 * 109.47529 * 150.00197 * 9 8 7
38 38 H 1.09000 * 109.47378 * 329.99617 * 10 8 7
39 39 H 1.09001 * 109.47153 * 209.99738 * 10 8 7
40 40 H 0.96999 * 120.00128 * 180.27192 * 14 13 11
41 41 H 1.08007 * 120.03840 * 179.72832 * 19 7 6
42 42 H 1.08002 * 119.96351 * 180.25872 * 20 19 7
43 43 H 1.08999 * 109.47106 * 53.95667 * 21 2 1
44 44 H 1.09001 * 109.47101 * 173.95768 * 21 2 1
45 45 H 1.09003 * 117.49667 * 214.98219 * 24 22 21
46 46 H 1.08997 * 117.49649 * 359.97438 * 24 22 21
47 47 H 1.08997 * 109.47400 * 59.99401 * 26 25 22
48 48 H 1.09001 * 109.47850 * 179.97438 * 26 25 22
49 49 H 1.09007 * 109.47245 * 299.99745 * 26 25 22
50 50 H 1.09007 * 109.46833 * 59.99936 * 27 25 22
51 51 H 1.08999 * 109.47698 * 179.97438 * 27 25 22
52 52 H 1.08999 * 109.46899 * 300.00626 * 27 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6369 2.0471 1.2984
5 6 2.4952 1.9640 2.3794
6 6 2.1694 2.5817 3.5709
7 6 0.9783 3.2875 3.6825
8 7 0.6453 3.9130 4.8862
9 6 1.5527 3.8245 6.0330
10 6 -0.6116 4.6564 5.0024
11 6 -1.7020 3.7293 5.4741
12 1 -1.4809 2.6900 5.6676
13 6 -2.9820 4.2076 5.6576
14 7 -3.9348 3.3972 6.0640
15 14 -3.3646 6.0050 5.3222
16 1 -3.1647 6.7937 6.5644
17 1 -2.4589 6.5142 4.2613
18 1 -4.7744 6.1358 4.8743
19 6 0.1161 3.3650 2.5961
20 6 0.4504 2.7493 1.4060
21 6 1.9955 -0.7661 -1.1375
22 6 1.6315 -2.2426 -0.9702
23 1 1.5316 -2.5886 0.0587
24 6 0.7063 -2.8652 -2.0178
25 6 2.1922 -3.2291 -1.9964
26 6 3.0745 -2.6636 -3.1112
27 6 2.5704 -4.6261 -1.5002
28 1 -0.3633 0.5139 -0.8901
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3634 0.5139 0.8899
31 1 1.5612 1.9273 -0.8310
32 1 3.0797 1.3444 -0.1081
33 1 3.4210 1.4147 2.2921
34 1 2.8400 2.5160 4.4150
35 1 1.3001 2.9478 6.6295
36 1 2.5797 3.7388 5.6780
37 1 1.4534 4.7211 6.6449
38 1 -0.8809 5.0690 4.0301
39 1 -0.4889 5.4677 5.7199
40 1 -4.8362 3.7328 6.1893
41 1 -0.8130 3.9093 2.6809
42 1 -0.2175 2.8127 0.5597
43 1 1.5612 -0.3874 -2.0627
44 1 3.0798 -0.6612 -1.1755
45 1 -0.0019 -3.6210 -1.6782
46 1 0.3567 -2.2227 -2.8259
47 1 3.9460 -2.1770 -2.6733
48 1 3.4005 -3.4740 -3.7631
49 1 2.5058 -1.9367 -3.6913
50 1 1.6896 -5.1142 -1.0829
51 1 2.9522 -5.2166 -2.3331
52 1 3.3383 -4.5430 -0.7312
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000827941093.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:55:45
Heat of formation + Delta-G solvation = 58.152324 kcal
Electronic energy + Delta-G solvation = -26163.048002 eV
Core-core repulsion = 22742.201713 eV
Total energy + Delta-G solvation = -3420.846289 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-39.47547 -38.90806 -36.96511 -35.26364 -32.62936 -30.73018 -30.55026 -29.40839
-28.33533 -28.05831 -27.22069 -26.55702 -24.60029 -22.91865 -21.67676 -21.34417
-20.81085 -19.54068 -18.79744 -16.94526 -16.65401 -15.96883 -15.51166 -15.31356
-14.97825 -14.47543 -14.38536 -14.14967 -13.91245 -13.78792 -13.54196 -13.19109
-13.03414 -12.95272 -12.78241 -12.62892 -12.40853 -12.24833 -12.16945 -11.83528
-11.61710 -11.58889 -11.55471 -11.46486 -11.44684 -11.19915 -10.94476 -10.66214
-10.63746 -10.29974 -9.98973 -9.94520 -9.70046 -9.57671 -8.88099 -8.65878
-8.30285 -8.19649 -6.39422 -6.13973 -4.13725 2.08326 2.19276 3.20896
3.29306 3.29956 3.48483 3.96556 4.07377 4.32298 4.49444 4.53848
4.59066 4.75429 4.85008 5.16031 5.16503 5.20313 5.26623 5.35097
5.36385 5.47458 5.51114 5.55110 5.59306 5.61785 5.65356 5.66271
5.67964 5.73619 5.74098 5.81015 5.85070 5.89329 5.95306 6.05599
6.07576 6.18281 6.22719 6.27733 6.32697 6.37020 6.56775 6.72769
6.76890 7.01795 7.06882 7.10899 7.20546 7.31530 7.52848 7.55797
8.05760 8.35083 8.52165 8.94127 9.45888 10.99167
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.018280 B = 0.002517 C = 0.002380
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1531.321113 B =11120.041955 C =11760.876257
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.534 5.534
3 C 0.110 3.890
4 C -0.163 4.163
5 C -0.052 4.052
6 C -0.218 4.218
7 C 0.241 3.759
8 N -0.612 5.612
9 C 0.101 3.899
10 C 0.221 3.779
11 C -0.533 4.533
12 H 0.076 0.924
13 C 0.072 3.928
14 N -0.895 5.895
15 Si 0.872 3.128
16 H -0.275 1.275
17 H -0.265 1.265
18 H -0.284 1.284
19 C -0.187 4.187
20 C -0.066 4.066
21 C 0.087 3.913
22 C -0.133 4.133
23 H 0.112 0.888
24 C -0.176 4.176
25 C -0.130 4.130
26 C -0.114 4.114
27 C -0.114 4.114
28 H 0.019 0.981
29 H 0.065 0.935
30 H 0.078 0.922
31 H 0.032 0.968
32 H 0.072 0.928
33 H 0.110 0.890
34 H 0.114 0.886
35 H 0.044 0.956
36 H 0.056 0.944
37 H 0.060 0.940
38 H 0.031 0.969
39 H 0.023 0.977
40 H 0.265 0.735
41 H 0.127 0.873
42 H 0.108 0.892
43 H 0.030 0.970
44 H 0.074 0.926
45 H 0.092 0.908
46 H 0.090 0.910
47 H 0.059 0.941
48 H 0.057 0.943
49 H 0.055 0.945
50 H 0.056 0.944
51 H 0.057 0.943
52 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.260 -8.501 -15.822 22.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.258 5.258
3 C -0.016 4.016
4 C -0.166 4.166
5 C -0.071 4.071
6 C -0.241 4.241
7 C 0.135 3.865
8 N -0.318 5.318
9 C -0.043 4.043
10 C 0.099 3.901
11 C -0.571 4.571
12 H 0.094 0.906
13 C -0.131 4.131
14 N -0.533 5.533
15 Si 0.699 3.301
16 H -0.201 1.201
17 H -0.189 1.189
18 H -0.209 1.209
19 C -0.210 4.210
20 C -0.085 4.085
21 C -0.040 4.040
22 C -0.151 4.151
23 H 0.130 0.870
24 C -0.213 4.213
25 C -0.130 4.130
26 C -0.171 4.171
27 C -0.171 4.171
28 H 0.037 0.963
29 H 0.084 0.916
30 H 0.097 0.903
31 H 0.050 0.950
32 H 0.091 0.909
33 H 0.128 0.872
34 H 0.132 0.868
35 H 0.063 0.937
36 H 0.074 0.926
37 H 0.079 0.921
38 H 0.049 0.951
39 H 0.041 0.959
40 H 0.075 0.925
41 H 0.145 0.855
42 H 0.126 0.874
43 H 0.049 0.951
44 H 0.093 0.907
45 H 0.110 0.890
46 H 0.108 0.892
47 H 0.078 0.922
48 H 0.076 0.924
49 H 0.074 0.926
50 H 0.075 0.925
51 H 0.076 0.924
52 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 14.156 -8.610 -15.135 22.441
hybrid contribution -0.910 1.200 -0.657 1.643
sum 13.246 -7.410 -15.791 21.903
Atomic orbital electron populations
1.22435 0.87119 1.01825 1.01028 1.62001 1.08345 1.13584 1.41846
1.20827 0.99211 0.87145 0.94445 1.19137 0.97189 1.04552 0.95713
1.20488 0.98157 0.96572 0.91878 1.20558 0.98217 1.06344 0.99007
1.17892 0.92253 0.90240 0.86147 1.46692 1.21535 1.55019 1.08581
1.21477 0.92655 1.01374 0.88825 1.19668 0.81671 0.91789 0.96932
1.21477 0.92447 0.97955 1.45265 0.90569 1.24904 0.96120 0.97476
0.94583 1.69904 1.01871 1.35229 1.46304 0.86915 0.78153 0.85809
0.79247 1.20065 1.18943 1.20922 1.20782 1.01132 1.06448 0.92614
1.20654 0.95238 0.96034 0.96620 1.21629 0.99668 0.91235 0.91506
1.22453 1.03219 0.93354 0.96100 0.86963 1.23332 0.92394 1.03633
1.01897 1.21596 0.95436 0.96270 0.99715 1.21327 0.98930 1.00450
0.96438 1.21341 1.01442 0.93508 1.00808 0.96266 0.91637 0.90324
0.94956 0.90941 0.87221 0.86803 0.93745 0.92581 0.92136 0.95093
0.95940 0.92529 0.85483 0.87441 0.95141 0.90741 0.88994 0.89181
0.92175 0.92351 0.92603 0.92513 0.92355 0.92157
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.31 8.97 60.06 0.54 0.85 16
2 N -0.53 -6.75 4.75 -244.38 -1.16 -7.91 16
3 C 0.11 1.40 5.11 -4.98 -0.03 1.38 16
4 C -0.16 -2.51 4.88 -104.59 -0.51 -3.02 16
5 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16
6 C -0.22 -3.78 9.21 -39.38 -0.36 -4.14 16
7 C 0.24 4.82 6.55 -83.79 -0.55 4.27 16
8 N -0.61 -12.84 2.99 -181.00 -0.54 -13.38 16
9 C 0.10 1.73 10.23 59.85 0.61 2.34 16
10 C 0.22 5.20 4.02 -5.20 -0.02 5.18 16
11 C -0.53 -14.86 9.94 -34.44 -0.34 -15.21 16
12 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16
13 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16
14 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16
15 Si 0.87 20.74 27.47 -169.99 -4.67 16.07 16
16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
17 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16
18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
19 C -0.19 -3.72 9.20 -39.38 -0.36 -4.08 16
20 C -0.07 -1.12 7.95 -39.61 -0.32 -1.43 16
21 C 0.09 0.90 4.32 -3.83 -0.02 0.89 16
22 C -0.13 -1.30 4.46 -90.62 -0.40 -1.71 16
23 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16
24 C -0.18 -1.55 9.47 -26.73 -0.25 -1.80 16
25 C -0.13 -1.08 2.70 -154.51 -0.42 -1.50 16
26 C -0.11 -0.83 8.86 37.16 0.33 -0.50 16
27 C -0.11 -0.85 9.85 37.16 0.37 -0.49 16
28 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16
29 H 0.06 0.81 7.16 -51.93 -0.37 0.44 16
30 H 0.08 1.20 6.17 -51.93 -0.32 0.88 16
31 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16
32 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16
33 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16
34 H 0.11 1.78 6.14 -52.48 -0.32 1.45 16
35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16
36 H 0.06 0.81 6.20 -51.92 -0.32 0.49 16
37 H 0.06 0.97 7.89 -51.93 -0.41 0.56 16
38 H 0.03 0.74 5.26 -51.93 -0.27 0.46 16
39 H 0.02 0.52 7.32 -51.93 -0.38 0.14 16
40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
41 H 0.13 2.72 6.15 -52.48 -0.32 2.40 16
42 H 0.11 1.63 8.03 -52.49 -0.42 1.21 16
43 H 0.03 0.31 7.85 -51.93 -0.41 -0.10 16
44 H 0.07 0.73 7.56 -51.93 -0.39 0.34 16
45 H 0.09 0.79 8.05 -51.93 -0.42 0.37 16
46 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16
47 H 0.06 0.43 7.83 -51.93 -0.41 0.02 16
48 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16
49 H 0.05 0.40 7.90 -51.92 -0.41 -0.01 16
50 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16
51 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16
52 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
LS Contribution 404.95 15.07 6.10 6.10
Total: -1.00 -30.00 404.95 -11.07 -41.07
By element:
Atomic # 1 Polarization: 11.94 SS G_CDS: -9.36 Total: 2.59 kcal
Atomic # 6 Polarization: -16.02 SS G_CDS: -2.21 Total: -18.23 kcal
Atomic # 7 Polarization: -46.67 SS G_CDS: -0.93 Total: -47.60 kcal
Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -30.00 -11.07 -41.07 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000827941093.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.224 kcal
(2) G-P(sol) polarization free energy of solvation -30.004 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.220 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.152 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds