Wall clock time and date at job start Tue Mar 31 2020 10:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99961 * 2 1 4 4 C 1.50699 * 109.47356 * 66.04318 * 3 2 1 5 5 C 1.38285 * 119.92769 * 89.99941 * 4 3 2 6 6 C 1.38106 * 120.07596 * 180.02562 * 5 4 3 7 7 C 1.38902 * 119.92487 * 359.97438 * 6 5 4 8 8 N 1.39677 * 120.07682 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99768 * 359.97438 * 8 7 6 10 10 C 1.46495 * 120.00418 * 180.02562 * 8 7 6 11 11 C 1.50702 * 109.47571 * 89.99958 * 10 8 7 12 12 H 1.08002 * 119.99446 * 359.97438 * 11 10 8 13 13 C 1.37871 * 120.00072 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99826 * 179.72119 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.38912 * 119.85150 * 0.25678 * 7 6 5 20 20 C 1.38099 * 119.92352 * 359.49263 * 19 7 6 21 21 C 1.46897 * 111.00120 * 236.04142 * 2 1 3 22 22 C 1.52996 * 109.47196 * 293.95481 * 21 2 1 23 23 H 1.09002 * 115.55124 * 330.72805 * 22 21 2 24 24 C 1.53008 * 117.49536 * 116.39379 * 22 21 2 25 25 C 1.52995 * 117.49829 * 185.01148 * 22 21 2 26 26 C 1.52997 * 117.50089 * 0.02562 * 25 22 21 27 27 C 1.53004 * 117.50135 * 145.02204 * 25 22 21 28 28 H 1.09006 * 109.46828 * 60.00062 * 1 2 3 29 29 H 1.09000 * 109.47633 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47547 * 300.00249 * 1 2 3 31 31 H 1.08999 * 109.47364 * 306.03969 * 3 2 1 32 32 H 1.09004 * 109.47322 * 186.03895 * 3 2 1 33 33 H 1.08002 * 119.96211 * 359.97438 * 5 4 3 34 34 H 1.08004 * 120.03466 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47816 * 270.00381 * 9 8 7 36 36 H 1.09008 * 109.47270 * 30.00169 * 9 8 7 37 37 H 1.09000 * 109.47529 * 150.00197 * 9 8 7 38 38 H 1.09000 * 109.47378 * 329.99617 * 10 8 7 39 39 H 1.09001 * 109.47153 * 209.99738 * 10 8 7 40 40 H 0.96999 * 120.00128 * 180.27192 * 14 13 11 41 41 H 1.08007 * 120.03840 * 179.72832 * 19 7 6 42 42 H 1.08002 * 119.96351 * 180.25872 * 20 19 7 43 43 H 1.08999 * 109.47106 * 53.95667 * 21 2 1 44 44 H 1.09001 * 109.47101 * 173.95768 * 21 2 1 45 45 H 1.09003 * 117.49667 * 214.98219 * 24 22 21 46 46 H 1.08997 * 117.49649 * 359.97438 * 24 22 21 47 47 H 1.08997 * 109.47400 * 59.99401 * 26 25 22 48 48 H 1.09001 * 109.47850 * 179.97438 * 26 25 22 49 49 H 1.09007 * 109.47245 * 299.99745 * 26 25 22 50 50 H 1.09007 * 109.46833 * 59.99936 * 27 25 22 51 51 H 1.08999 * 109.47698 * 179.97438 * 27 25 22 52 52 H 1.08999 * 109.46899 * 300.00626 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 6 2.4952 1.9640 2.3794 6 6 2.1694 2.5817 3.5709 7 6 0.9783 3.2875 3.6825 8 7 0.6453 3.9130 4.8862 9 6 1.5527 3.8245 6.0330 10 6 -0.6116 4.6564 5.0024 11 6 -1.7020 3.7293 5.4741 12 1 -1.4809 2.6900 5.6676 13 6 -2.9820 4.2076 5.6576 14 7 -3.9348 3.3972 6.0640 15 14 -3.3646 6.0050 5.3222 16 1 -3.1647 6.7937 6.5644 17 1 -2.4589 6.5142 4.2613 18 1 -4.7744 6.1358 4.8743 19 6 0.1161 3.3650 2.5961 20 6 0.4504 2.7493 1.4060 21 6 1.9955 -0.7661 -1.1375 22 6 1.6315 -2.2426 -0.9702 23 1 1.5316 -2.5886 0.0587 24 6 0.7063 -2.8652 -2.0178 25 6 2.1922 -3.2291 -1.9964 26 6 3.0745 -2.6636 -3.1112 27 6 2.5704 -4.6261 -1.5002 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.5612 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1081 33 1 3.4210 1.4147 2.2921 34 1 2.8400 2.5160 4.4150 35 1 1.3001 2.9478 6.6295 36 1 2.5797 3.7388 5.6780 37 1 1.4534 4.7211 6.6449 38 1 -0.8809 5.0690 4.0301 39 1 -0.4889 5.4677 5.7199 40 1 -4.8362 3.7328 6.1893 41 1 -0.8130 3.9093 2.6809 42 1 -0.2175 2.8127 0.5597 43 1 1.5612 -0.3874 -2.0627 44 1 3.0798 -0.6612 -1.1755 45 1 -0.0019 -3.6210 -1.6782 46 1 0.3567 -2.2227 -2.8259 47 1 3.9460 -2.1770 -2.6733 48 1 3.4005 -3.4740 -3.7631 49 1 2.5058 -1.9367 -3.6913 50 1 1.6896 -5.1142 -1.0829 51 1 2.9522 -5.2166 -2.3331 52 1 3.3383 -4.5430 -0.7312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827941093.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:44 Heat of formation + Delta-G solvation = 42.613808 kcal Electronic energy + Delta-G solvation = -26163.721803 eV Core-core repulsion = 22742.201713 eV Total energy + Delta-G solvation = -3421.520090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.64090 -39.87730 -38.12668 -36.59758 -34.70773 -32.03285 -31.89510 -30.39833 -29.93205 -28.75927 -28.19221 -27.60545 -26.11278 -24.36196 -22.94548 -22.76522 -21.62952 -20.95186 -19.49820 -19.09348 -18.14056 -16.98991 -16.69730 -16.41652 -16.35572 -15.96323 -15.52236 -15.17295 -15.04987 -14.90737 -14.72540 -14.49951 -14.36356 -14.23794 -14.16943 -13.63018 -13.34112 -13.30182 -13.17301 -13.15691 -12.89125 -12.85282 -12.65716 -12.57594 -12.47412 -12.38487 -12.24907 -12.06145 -12.00017 -11.79202 -11.73832 -11.41324 -10.82926 -10.65981 -10.45348 -10.33666 -9.65707 -9.19931 -8.33985 -7.91131 -6.39310 0.70301 0.82801 1.32611 1.34825 1.45377 2.29766 2.53911 2.74605 2.96395 2.99694 3.35054 3.80119 3.87198 3.99418 4.05435 4.09710 4.23757 4.23851 4.35343 4.38448 4.42780 4.50617 4.59716 4.61358 4.68087 4.68656 4.74477 4.80145 4.82496 4.84940 4.87965 4.91176 4.91858 4.96940 5.03161 5.07942 5.08331 5.10323 5.11916 5.15614 5.30273 5.31950 5.35267 5.45306 5.51645 5.60114 5.65422 5.90487 6.09078 6.15832 6.20357 6.28885 6.59593 6.69556 6.87020 7.26075 8.83667 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.002517 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.321113 B =11120.041955 C =11760.876257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.545 5.545 3 C 0.113 3.887 4 C -0.153 4.153 5 C -0.050 4.050 6 C -0.216 4.216 7 C 0.210 3.790 8 N -0.629 5.629 9 C 0.099 3.901 10 C 0.231 3.769 11 C -0.535 4.535 12 H 0.022 0.978 13 C 0.010 3.990 14 N -0.947 5.947 15 Si 0.948 3.052 16 H -0.260 1.260 17 H -0.246 1.246 18 H -0.281 1.281 19 C -0.216 4.216 20 C -0.067 4.067 21 C 0.094 3.906 22 C -0.144 4.144 23 H 0.094 0.906 24 C -0.177 4.177 25 C -0.121 4.121 26 C -0.114 4.114 27 C -0.115 4.115 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.029 0.971 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.036 0.964 40 H 0.268 0.732 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.036 0.964 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.053 0.947 51 H 0.070 0.930 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.682 -7.981 -17.894 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.269 5.269 3 C -0.014 4.014 4 C -0.155 4.155 5 C -0.069 4.069 6 C -0.239 4.239 7 C 0.106 3.894 8 N -0.337 5.337 9 C -0.044 4.044 10 C 0.109 3.891 11 C -0.574 4.574 12 H 0.040 0.960 13 C -0.188 4.188 14 N -0.587 5.587 15 Si 0.770 3.230 16 H -0.185 1.185 17 H -0.169 1.169 18 H -0.207 1.207 19 C -0.239 4.239 20 C -0.086 4.086 21 C -0.034 4.034 22 C -0.163 4.163 23 H 0.113 0.887 24 C -0.214 4.214 25 C -0.122 4.122 26 C -0.171 4.171 27 C -0.172 4.172 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.048 0.952 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.054 0.946 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.111 0.889 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.089 0.911 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.625 -8.111 -17.226 25.277 hybrid contribution -1.609 0.834 -0.081 1.814 sum 15.016 -7.277 -17.307 24.041 Atomic orbital electron populations 1.22314 0.87815 1.01709 1.00021 1.61954 1.07836 1.13675 1.43428 1.20849 1.00586 0.87059 0.92873 1.19495 0.96000 1.02992 0.97035 1.20875 0.99151 0.95802 0.91078 1.20813 0.97354 1.05387 1.00338 1.18196 0.93619 0.91638 0.85916 1.46683 1.21212 1.55825 1.10007 1.21623 0.93575 1.01274 0.87954 1.19360 0.81828 0.91277 0.96676 1.21656 0.94360 0.96299 1.45068 0.95990 1.25896 0.95684 1.03045 0.94135 1.70074 1.02528 1.37991 1.48112 0.85709 0.78110 0.79060 0.80084 1.18501 1.16950 1.20701 1.20763 1.00692 1.08084 0.94327 1.20809 0.96174 0.95646 0.95963 1.21623 1.00134 0.90938 0.90675 1.22348 1.04820 0.93523 0.95593 0.88734 1.23362 0.92897 1.03597 1.01537 1.21717 0.95166 0.96147 0.99125 1.21352 0.98773 1.00865 0.96133 1.21370 1.01366 0.93236 1.01268 0.95430 0.91375 0.93073 0.94140 0.88733 0.84148 0.85002 0.95234 0.89454 0.91006 0.95147 0.94651 0.92328 0.88234 0.86260 0.94591 0.89670 0.89100 0.88862 0.91781 0.91337 0.92481 0.92821 0.91131 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 8.97 127.69 1.15 1.90 16 2 N -0.55 -12.68 4.75 -927.07 -4.41 -17.09 16 3 C 0.11 2.55 5.11 85.56 0.44 2.99 16 4 C -0.15 -4.43 4.88 -19.84 -0.10 -4.53 16 5 C -0.05 -1.45 9.69 22.25 0.22 -1.23 16 6 C -0.22 -7.20 9.21 22.40 0.21 -7.00 16 7 C 0.21 8.51 6.55 38.21 0.25 8.76 16 8 N -0.63 -26.79 2.99 -726.56 -2.17 -28.96 16 9 C 0.10 3.35 10.23 127.77 1.31 4.66 16 10 C 0.23 11.10 4.02 85.63 0.34 11.44 16 11 C -0.54 -31.27 9.94 25.60 0.25 -31.01 16 12 H 0.02 1.47 8.06 -2.91 -0.02 1.45 16 13 C 0.01 0.60 5.47 84.65 0.46 1.06 16 14 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 15 Si 0.95 43.32 27.47 68.60 1.88 45.20 16 16 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 17 H -0.25 -10.41 6.54 99.48 0.65 -9.76 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 C -0.22 -8.85 9.20 22.40 0.21 -8.65 16 20 C -0.07 -2.25 7.95 22.25 0.18 -2.07 16 21 C 0.09 1.70 4.32 86.30 0.37 2.08 16 22 C -0.14 -2.61 4.46 -10.79 -0.05 -2.66 16 23 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 24 C -0.18 -2.87 9.47 30.60 0.29 -2.58 16 25 C -0.12 -1.78 2.70 -52.18 -0.14 -1.92 16 26 C -0.11 -1.35 8.86 71.98 0.64 -0.71 16 27 C -0.12 -1.53 9.85 71.98 0.71 -0.82 16 28 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.07 1.66 7.16 -2.39 -0.02 1.64 16 30 H 0.05 1.57 6.17 -2.39 -0.01 1.56 16 31 H 0.04 0.87 8.06 -2.39 -0.02 0.85 16 32 H 0.09 1.76 7.87 -2.38 -0.02 1.74 16 33 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.13 3.82 6.14 -2.91 -0.02 3.80 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 2.37 6.20 -2.38 -0.01 2.35 16 37 H 0.07 2.23 7.89 -2.39 -0.02 2.21 16 38 H 0.03 1.47 5.26 -2.39 -0.01 1.45 16 39 H 0.04 1.60 7.32 -2.39 -0.02 1.58 16 40 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.10 4.53 6.15 -2.91 -0.02 4.51 16 42 H 0.12 3.62 8.03 -2.91 -0.02 3.59 16 43 H 0.04 0.63 7.85 -2.39 -0.02 0.61 16 44 H 0.09 1.38 7.56 -2.39 -0.02 1.36 16 45 H 0.09 1.47 8.05 -2.39 -0.02 1.46 16 46 H 0.09 1.45 7.94 -2.39 -0.02 1.43 16 47 H 0.06 0.72 7.83 -2.39 -0.02 0.70 16 48 H 0.07 0.68 7.92 -2.39 -0.02 0.66 16 49 H 0.06 0.67 7.90 -2.38 -0.02 0.65 16 50 H 0.05 0.73 7.90 -2.38 -0.02 0.72 16 51 H 0.07 0.76 7.92 -2.39 -0.02 0.74 16 52 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -68.30 404.95 3.14 -65.16 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.81 Total: 25.40 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 6.73 Total: -30.30 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -6.28 Total: -105.46 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -68.30 3.14 -65.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827941093.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.774 kcal (2) G-P(sol) polarization free energy of solvation -68.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds