Wall clock time and date at job start Tue Mar 31 2020 11:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.46879 * 2 1 4 4 C 1.46894 * 111.00093 * 199.70968 * 3 2 1 5 5 C 1.50699 * 109.47510 * 66.04393 * 4 3 2 6 6 H 1.08002 * 119.99562 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00271 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99894 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00193 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46725 * 60.00015 * 9 7 5 11 11 H 1.48498 * 109.47326 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46940 * 300.00525 * 9 7 5 13 13 C 1.46906 * 110.99992 * 75.75404 * 3 2 1 14 14 C 1.50705 * 109.46928 * 199.77408 * 13 3 2 15 15 C 1.38308 * 119.91721 * 264.65371 * 14 13 3 16 16 C 1.38091 * 120.06860 * 180.29701 * 15 14 13 17 17 C 1.38927 * 119.92510 * 359.47759 * 16 15 14 18 18 N 1.39671 * 120.07353 * 180.27287 * 17 16 15 19 19 C 1.46857 * 111.00237 * 64.20602 * 18 17 16 20 20 C 1.53037 * 109.52481 * 174.16082 * 19 18 17 21 21 C 1.53118 * 109.27802 * 59.17819 * 20 19 18 22 22 C 1.53122 * 109.16216 * 302.34748 * 21 20 19 23 23 C 1.46847 * 111.00151 * 299.99946 * 18 17 16 24 24 C 1.38883 * 119.85109 * 0.24617 * 17 16 15 25 25 C 1.50702 * 120.03682 * 180.02562 * 24 17 16 26 26 C 1.38125 * 119.92581 * 0.02562 * 24 17 16 27 27 H 1.08994 * 109.47482 * 294.85973 * 1 2 3 28 28 H 1.09002 * 109.47138 * 54.86647 * 1 2 3 29 29 H 1.09009 * 109.47001 * 174.85709 * 1 2 3 30 30 H 1.08998 * 109.46978 * 239.99887 * 2 1 3 31 31 H 1.08996 * 109.46798 * 119.99501 * 2 1 3 32 32 H 1.09004 * 109.47302 * 186.04960 * 4 3 2 33 33 H 1.09008 * 109.46956 * 306.04340 * 4 3 2 34 34 H 0.97000 * 119.99815 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.46954 * 79.76744 * 13 3 2 36 36 H 1.09005 * 109.47011 * 319.76780 * 13 3 2 37 37 H 1.07998 * 119.96837 * 0.04707 * 15 14 13 38 38 H 1.08007 * 120.03427 * 179.74766 * 16 15 14 39 39 H 1.09000 * 109.45797 * 294.18033 * 19 18 17 40 40 H 1.09003 * 109.45828 * 54.14046 * 19 18 17 41 41 H 1.09001 * 109.50411 * 299.23956 * 20 19 18 42 42 H 1.08995 * 109.53393 * 179.14108 * 20 19 18 43 43 H 1.09000 * 109.52230 * 182.43619 * 21 20 19 44 44 H 1.09006 * 109.57130 * 62.28335 * 21 20 19 45 45 H 1.09001 * 109.49958 * 297.70930 * 22 21 20 46 46 H 1.08997 * 109.53535 * 177.61575 * 22 21 20 47 47 H 1.09001 * 109.45763 * 305.84987 * 23 18 17 48 48 H 1.08997 * 109.46491 * 65.83546 * 23 18 17 49 49 H 1.09003 * 109.47183 * 89.99949 * 25 24 17 50 50 H 1.09003 * 109.47138 * 210.00149 * 25 24 17 51 51 H 1.08994 * 109.47313 * 329.99769 * 25 24 17 52 52 H 1.08008 * 119.95961 * 180.02562 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4123 1.4510 -0.4625 5 6 3.4798 1.0469 -1.9127 6 1 2.5781 0.7692 -2.4384 7 6 4.6925 1.0317 -2.5684 8 7 5.7905 1.3694 -1.9282 9 14 4.7762 0.5301 -4.3659 10 1 3.9416 1.4528 -5.1766 11 1 6.1843 0.5958 -4.8331 12 1 4.2694 -0.8575 -4.5167 13 6 1.8769 1.9938 1.3293 14 6 1.9160 3.4949 1.2011 15 6 3.1070 4.1725 1.3891 16 6 3.1452 5.5484 1.2784 17 6 1.9878 6.2510 0.9672 18 7 2.0241 7.6422 0.8489 19 6 2.8783 8.0530 -0.2729 20 6 2.7794 9.5683 -0.4630 21 6 3.2231 10.2692 0.8240 22 6 2.3492 9.7877 1.9855 23 6 2.4606 8.2660 2.1046 24 6 0.7948 5.5669 0.7734 25 6 -0.4630 6.3249 0.4350 26 6 0.7625 4.1911 0.8912 27 1 -0.3634 0.4320 0.9324 28 1 -0.3633 0.5914 -0.8404 29 1 -0.3633 -1.0236 -0.0921 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.7842 2.4696 -0.3514 33 1 4.0252 0.7737 0.1323 34 1 6.6438 1.3583 -2.3894 35 1 2.6938 1.6624 1.9703 36 1 0.9256 1.6913 1.7673 37 1 4.0073 3.6253 1.6267 38 1 4.0747 6.0773 1.4294 39 1 3.9121 7.7801 -0.0610 40 1 2.5494 7.5506 -1.1826 41 1 1.7483 9.8403 -0.6885 42 1 3.4250 9.8753 -1.2857 43 1 3.1133 11.3474 0.7081 44 1 4.2665 10.0294 1.0294 45 1 1.3113 10.0632 1.7985 46 1 2.6873 10.2509 2.9124 47 1 1.8283 7.9185 2.9216 48 1 3.4964 7.9925 2.3052 49 1 -0.5517 6.4169 -0.6475 50 1 -1.3272 5.7877 0.8260 51 1 -0.4200 7.3181 0.8818 52 1 -0.1649 3.6585 0.7402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827968809.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:00 Heat of formation + Delta-G solvation = 17.385461 kcal Electronic energy + Delta-G solvation = -27234.114534 eV Core-core repulsion = 23811.500461 eV Total energy + Delta-G solvation = -3422.614073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16134 -38.21905 -36.60407 -33.74058 -32.59614 -32.36739 -30.91075 -30.47393 -29.35106 -26.99114 -26.42024 -24.92453 -23.32658 -23.10635 -22.38372 -21.83121 -20.30724 -19.70786 -19.31778 -16.97595 -16.39214 -15.56916 -15.16994 -15.03794 -14.78332 -14.54046 -14.34853 -14.07330 -13.90919 -13.65600 -13.51755 -13.23883 -13.04084 -12.81541 -12.72754 -12.39855 -12.31844 -12.05153 -11.91934 -11.57598 -11.42385 -11.30657 -11.11115 -11.07274 -10.92112 -10.80123 -10.73525 -10.66830 -10.53808 -10.46739 -10.29549 -10.10813 -9.74776 -9.15967 -8.41956 -8.39045 -8.29381 -7.99791 -7.20757 -6.00077 -4.00415 1.67548 1.83094 3.34523 3.38373 3.41690 3.87572 4.05871 4.45641 4.69990 4.77893 4.80828 5.08876 5.15939 5.18819 5.23924 5.32370 5.35399 5.42444 5.43980 5.52757 5.56719 5.68613 5.71269 5.74205 5.79256 5.81477 5.84084 5.89371 5.95765 5.99313 6.00258 6.01480 6.03875 6.11590 6.14497 6.16282 6.25032 6.31312 6.40884 6.59226 6.72047 6.78739 6.82714 6.89235 7.02338 7.13210 7.22293 7.36129 7.38191 7.68563 7.83600 8.14347 8.25557 8.58654 9.06743 9.63109 11.10795 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.003715 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.846651 B = 7534.526836 C = 8877.027281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 N -0.530 5.530 4 C 0.191 3.809 5 C -0.505 4.505 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.089 3.911 14 C -0.053 4.053 15 C -0.099 4.099 16 C -0.144 4.144 17 C 0.072 3.928 18 N -0.495 5.495 19 C 0.059 3.941 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.115 4.115 23 C 0.059 3.941 24 C -0.067 4.067 25 C -0.099 4.099 26 C -0.096 4.096 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.017 0.983 32 H 0.036 0.964 33 H -0.013 1.013 34 H 0.261 0.739 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.035 0.965 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.072 0.928 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 13.658 8.757 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 N -0.255 5.255 4 C 0.066 3.934 5 C -0.544 4.544 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.039 4.039 14 C -0.054 4.054 15 C -0.119 4.119 16 C -0.164 4.164 17 C -0.021 4.021 18 N -0.216 5.216 19 C -0.067 4.067 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.068 4.068 24 C -0.068 4.068 25 C -0.156 4.156 26 C -0.115 4.115 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.005 0.995 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.053 0.947 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.091 0.909 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.350 14.120 8.296 18.858 hybrid contribution 1.774 -1.075 -0.339 2.102 sum -7.576 13.044 7.958 17.055 Atomic orbital electron populations 1.21800 0.96656 1.00269 1.01360 1.21981 0.94200 0.90227 1.00894 1.62150 1.25631 1.16533 1.21170 1.19780 0.81325 0.97088 0.95165 1.21128 0.93189 1.44528 0.95538 0.91987 1.24959 0.95658 0.95652 0.98223 1.69947 0.98390 1.48885 1.36639 0.86604 0.76821 0.79077 0.85176 1.20194 1.21399 1.20298 1.21033 1.00174 0.90479 0.92217 1.19814 0.92931 0.95450 0.97171 1.20933 0.97528 0.93627 0.99767 1.21444 0.97740 0.94949 1.02304 1.18416 0.92905 0.87929 1.02866 1.59488 1.52626 1.05114 1.04383 1.22133 0.94843 0.95671 0.94086 1.21588 1.02099 0.94357 0.97301 1.21585 0.99378 0.99693 0.95286 1.21586 1.00837 0.94734 0.98163 1.22119 0.98785 0.94357 0.91508 1.19659 0.94488 0.93104 0.99573 1.20572 0.93536 1.00074 1.01396 1.20757 0.98292 0.92654 0.99806 0.93888 0.92129 0.93455 0.89569 0.96475 0.94577 0.99508 0.92989 0.94974 0.91288 0.86368 0.87086 0.94521 0.90425 0.91110 0.91552 0.91983 0.92328 0.91129 0.91722 0.90810 0.94683 0.91840 0.92687 0.90914 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.96 37.16 0.37 -1.87 16 2 C 0.06 1.07 5.51 -3.82 -0.02 1.05 16 3 N -0.53 -11.44 4.34 -237.51 -1.03 -12.47 16 4 C 0.19 5.00 4.54 -4.98 -0.02 4.98 16 5 C -0.51 -14.29 8.23 -34.44 -0.28 -14.58 16 6 H 0.06 1.74 7.31 -52.49 -0.38 1.36 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.09 1.63 4.94 -4.97 -0.02 1.61 16 14 C -0.05 -0.95 5.04 -104.59 -0.53 -1.48 16 15 C -0.10 -1.79 8.38 -39.61 -0.33 -2.13 16 16 C -0.14 -2.37 8.70 -39.38 -0.34 -2.71 16 17 C 0.07 1.11 4.66 -83.79 -0.39 0.72 16 18 N -0.49 -6.41 3.57 -171.15 -0.61 -7.03 16 19 C 0.06 0.75 5.17 -3.83 -0.02 0.73 16 20 C -0.12 -1.15 6.09 -26.65 -0.16 -1.31 16 21 C -0.12 -1.08 6.00 -26.61 -0.16 -1.24 16 22 C -0.12 -1.04 6.09 -26.65 -0.16 -1.20 16 23 C 0.06 0.66 5.11 -3.84 -0.02 0.64 16 24 C -0.07 -1.03 5.90 -104.42 -0.62 -1.65 16 25 C -0.10 -1.24 9.77 36.01 0.35 -0.89 16 26 C -0.10 -1.58 9.37 -39.62 -0.37 -1.95 16 27 H 0.04 0.61 6.89 -51.93 -0.36 0.25 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 30 H 0.09 1.86 6.58 -51.93 -0.34 1.51 16 31 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 32 H 0.04 1.01 6.31 -51.93 -0.33 0.68 16 33 H -0.01 -0.36 8.12 -51.92 -0.42 -0.78 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.03 0.60 7.90 -51.93 -0.41 0.19 16 36 H 0.07 1.11 6.54 -51.93 -0.34 0.77 16 37 H 0.12 2.19 7.97 -52.49 -0.42 1.77 16 38 H 0.11 1.70 7.13 -52.48 -0.37 1.32 16 39 H 0.04 0.49 7.55 -51.93 -0.39 0.10 16 40 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 48 H 0.03 0.41 7.33 -51.93 -0.38 0.03 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 51 H 0.07 0.88 7.46 -51.93 -0.39 0.49 16 52 H 0.12 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -29.90 400.04 -12.31 -42.20 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -9.58 Total: 0.29 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -2.83 Total: -19.78 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.91 Total: -45.61 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.90 -12.31 -42.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827968809.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.590 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds