Wall clock time and date at job start Tue Mar 31 2020 11:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.46879 * 2 1 4 4 C 1.46894 * 111.00093 * 199.70968 * 3 2 1 5 5 C 1.50699 * 109.47510 * 66.04393 * 4 3 2 6 6 H 1.08002 * 119.99562 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00271 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99894 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00193 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46725 * 60.00015 * 9 7 5 11 11 H 1.48498 * 109.47326 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46940 * 300.00525 * 9 7 5 13 13 C 1.46906 * 110.99992 * 75.75404 * 3 2 1 14 14 C 1.50705 * 109.46928 * 199.77408 * 13 3 2 15 15 C 1.38308 * 119.91721 * 264.65371 * 14 13 3 16 16 C 1.38091 * 120.06860 * 180.29701 * 15 14 13 17 17 C 1.38927 * 119.92510 * 359.47759 * 16 15 14 18 18 N 1.39671 * 120.07353 * 180.27287 * 17 16 15 19 19 C 1.46857 * 111.00237 * 64.20602 * 18 17 16 20 20 C 1.53037 * 109.52481 * 174.16082 * 19 18 17 21 21 C 1.53118 * 109.27802 * 59.17819 * 20 19 18 22 22 C 1.53122 * 109.16216 * 302.34748 * 21 20 19 23 23 C 1.46847 * 111.00151 * 299.99946 * 18 17 16 24 24 C 1.38883 * 119.85109 * 0.24617 * 17 16 15 25 25 C 1.50702 * 120.03682 * 180.02562 * 24 17 16 26 26 C 1.38125 * 119.92581 * 0.02562 * 24 17 16 27 27 H 1.08994 * 109.47482 * 294.85973 * 1 2 3 28 28 H 1.09002 * 109.47138 * 54.86647 * 1 2 3 29 29 H 1.09009 * 109.47001 * 174.85709 * 1 2 3 30 30 H 1.08998 * 109.46978 * 239.99887 * 2 1 3 31 31 H 1.08996 * 109.46798 * 119.99501 * 2 1 3 32 32 H 1.09004 * 109.47302 * 186.04960 * 4 3 2 33 33 H 1.09008 * 109.46956 * 306.04340 * 4 3 2 34 34 H 0.97000 * 119.99815 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.46954 * 79.76744 * 13 3 2 36 36 H 1.09005 * 109.47011 * 319.76780 * 13 3 2 37 37 H 1.07998 * 119.96837 * 0.04707 * 15 14 13 38 38 H 1.08007 * 120.03427 * 179.74766 * 16 15 14 39 39 H 1.09000 * 109.45797 * 294.18033 * 19 18 17 40 40 H 1.09003 * 109.45828 * 54.14046 * 19 18 17 41 41 H 1.09001 * 109.50411 * 299.23956 * 20 19 18 42 42 H 1.08995 * 109.53393 * 179.14108 * 20 19 18 43 43 H 1.09000 * 109.52230 * 182.43619 * 21 20 19 44 44 H 1.09006 * 109.57130 * 62.28335 * 21 20 19 45 45 H 1.09001 * 109.49958 * 297.70930 * 22 21 20 46 46 H 1.08997 * 109.53535 * 177.61575 * 22 21 20 47 47 H 1.09001 * 109.45763 * 305.84987 * 23 18 17 48 48 H 1.08997 * 109.46491 * 65.83546 * 23 18 17 49 49 H 1.09003 * 109.47183 * 89.99949 * 25 24 17 50 50 H 1.09003 * 109.47138 * 210.00149 * 25 24 17 51 51 H 1.08994 * 109.47313 * 329.99769 * 25 24 17 52 52 H 1.08008 * 119.95961 * 180.02562 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4123 1.4510 -0.4625 5 6 3.4798 1.0469 -1.9127 6 1 2.5781 0.7692 -2.4384 7 6 4.6925 1.0317 -2.5684 8 7 5.7905 1.3694 -1.9282 9 14 4.7762 0.5301 -4.3659 10 1 3.9416 1.4528 -5.1766 11 1 6.1843 0.5958 -4.8331 12 1 4.2694 -0.8575 -4.5167 13 6 1.8769 1.9938 1.3293 14 6 1.9160 3.4949 1.2011 15 6 3.1070 4.1725 1.3891 16 6 3.1452 5.5484 1.2784 17 6 1.9878 6.2510 0.9672 18 7 2.0241 7.6422 0.8489 19 6 2.8783 8.0530 -0.2729 20 6 2.7794 9.5683 -0.4630 21 6 3.2231 10.2692 0.8240 22 6 2.3492 9.7877 1.9855 23 6 2.4606 8.2660 2.1046 24 6 0.7948 5.5669 0.7734 25 6 -0.4630 6.3249 0.4350 26 6 0.7625 4.1911 0.8912 27 1 -0.3634 0.4320 0.9324 28 1 -0.3633 0.5914 -0.8404 29 1 -0.3633 -1.0236 -0.0921 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.7842 2.4696 -0.3514 33 1 4.0252 0.7737 0.1323 34 1 6.6438 1.3583 -2.3894 35 1 2.6938 1.6624 1.9703 36 1 0.9256 1.6913 1.7673 37 1 4.0073 3.6253 1.6267 38 1 4.0747 6.0773 1.4294 39 1 3.9121 7.7801 -0.0610 40 1 2.5494 7.5506 -1.1826 41 1 1.7483 9.8403 -0.6885 42 1 3.4250 9.8753 -1.2857 43 1 3.1133 11.3474 0.7081 44 1 4.2665 10.0294 1.0294 45 1 1.3113 10.0632 1.7985 46 1 2.6873 10.2509 2.9124 47 1 1.8283 7.9185 2.9216 48 1 3.4964 7.9925 2.3052 49 1 -0.5517 6.4169 -0.6475 50 1 -1.3272 5.7877 0.8260 51 1 -0.4200 7.3181 0.8818 52 1 -0.1649 3.6585 0.7402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827968809.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:58 Heat of formation + Delta-G solvation = 2.437574 kcal Electronic energy + Delta-G solvation = -27234.762723 eV Core-core repulsion = 23811.500461 eV Total energy + Delta-G solvation = -3423.262262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32156 -39.47190 -38.09124 -34.99359 -34.57617 -33.55152 -31.83826 -31.78182 -30.96232 -28.69119 -27.61275 -26.35477 -24.72015 -24.08127 -23.97630 -23.03022 -21.82917 -20.94790 -20.42907 -18.53920 -18.09649 -17.08366 -16.55774 -16.39191 -16.10736 -15.94814 -15.66876 -15.36076 -15.19553 -14.90943 -14.57975 -14.32497 -14.28699 -14.05210 -13.99963 -13.97132 -13.78089 -13.33383 -13.19938 -12.89550 -12.82119 -12.76082 -12.57588 -12.41896 -12.37474 -12.20690 -12.15542 -12.02260 -11.76646 -11.61286 -11.55231 -11.36644 -11.26937 -11.19699 -10.61192 -9.63672 -9.45657 -9.31866 -8.98511 -8.20639 -6.29850 0.36125 0.50690 1.37912 1.41330 1.48971 2.38628 2.70444 2.85229 3.12018 3.48496 3.83717 3.91414 3.96720 3.99404 4.00456 4.03493 4.24705 4.30349 4.38301 4.42419 4.44888 4.49264 4.56644 4.58649 4.62952 4.70227 4.77544 4.79849 4.83370 4.89958 4.93460 4.98896 5.02290 5.05043 5.07642 5.12603 5.15153 5.20053 5.22756 5.26024 5.35718 5.39419 5.46798 5.49027 5.51586 5.64547 5.67705 5.78262 5.96740 6.03052 6.07778 6.38761 6.48989 6.65066 6.86453 7.39119 8.90149 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.003715 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.846651 B = 7534.526836 C = 8877.027281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.052 3.948 3 N -0.534 5.534 4 C 0.210 3.790 5 C -0.521 4.521 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.093 3.907 14 C -0.072 4.072 15 C -0.121 4.121 16 C -0.152 4.152 17 C 0.075 3.925 18 N -0.490 5.490 19 C 0.057 3.943 20 C -0.109 4.109 21 C -0.120 4.120 22 C -0.109 4.109 23 C 0.056 3.944 24 C -0.071 4.071 25 C -0.093 4.093 26 C -0.098 4.098 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.022 0.978 32 H 0.010 0.990 33 H -0.047 1.047 34 H 0.263 0.737 35 H 0.020 0.980 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.022 0.978 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.026 0.974 49 H 0.064 0.936 50 H 0.074 0.926 51 H 0.079 0.921 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.154 14.983 8.320 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 N -0.259 5.259 4 C 0.084 3.916 5 C -0.560 4.560 6 H 0.080 0.920 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.790 3.210 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.190 1.190 13 C -0.035 4.035 14 C -0.073 4.073 15 C -0.141 4.141 16 C -0.172 4.172 17 C -0.019 4.019 18 N -0.211 5.211 19 C -0.069 4.069 20 C -0.147 4.147 21 C -0.158 4.158 22 C -0.147 4.147 23 C -0.070 4.070 24 C -0.072 4.072 25 C -0.149 4.149 26 C -0.117 4.117 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.028 0.972 33 H -0.029 1.029 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.092 0.908 48 H 0.044 0.956 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.098 0.902 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.731 15.444 7.874 20.931 hybrid contribution 2.520 -1.459 -0.138 2.915 sum -9.211 13.985 7.736 18.446 Atomic orbital electron populations 1.21693 0.93037 1.01967 1.02087 1.22055 0.97045 0.88722 0.99799 1.62109 1.22298 1.18134 1.23333 1.19369 0.83613 0.94439 0.94189 1.21442 0.93371 1.44573 0.96576 0.92045 1.25876 0.95182 0.95451 1.03023 1.70088 0.98977 1.49816 1.38605 0.85501 0.77053 0.79193 0.79293 1.19506 1.20848 1.19026 1.21077 1.01178 0.90796 0.90416 1.19855 0.93544 0.95237 0.98627 1.20911 0.97228 0.94486 1.01437 1.21536 0.98666 0.94397 1.02582 1.18642 0.92492 0.89278 1.01510 1.59627 1.52659 1.03554 1.05284 1.22159 0.93820 0.97746 0.93199 1.21562 1.02719 0.92011 0.98415 1.21593 0.99014 1.00729 0.94433 1.21570 1.01270 0.92673 0.99142 1.22222 0.98194 0.96064 0.90552 1.20044 0.95651 0.93038 0.98442 1.20583 0.92580 1.00215 1.01534 1.20965 0.98206 0.93257 0.99225 0.91931 0.92806 0.91033 0.92285 0.96019 0.97187 1.02911 0.92860 0.96154 0.88259 0.88441 0.86847 0.95932 0.92202 0.90591 0.90662 0.89961 0.92778 0.90626 0.89947 0.90765 0.95563 0.91696 0.90754 0.90220 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.96 71.98 0.72 -3.07 16 2 C 0.05 2.00 5.51 86.31 0.48 2.48 16 3 N -0.53 -23.58 4.34 -905.35 -3.93 -27.51 16 4 C 0.21 11.57 4.54 85.56 0.39 11.96 16 5 C -0.52 -30.39 8.23 25.60 0.21 -30.18 16 6 H 0.06 3.51 7.31 -2.91 -0.02 3.49 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 9 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 C 0.09 3.46 4.94 85.56 0.42 3.88 16 14 C -0.07 -2.65 5.04 -19.84 -0.10 -2.75 16 15 C -0.12 -4.68 8.38 22.25 0.19 -4.49 16 16 C -0.15 -5.22 8.70 22.40 0.19 -5.03 16 17 C 0.07 2.29 4.66 38.21 0.18 2.47 16 18 N -0.49 -12.36 3.57 -695.39 -2.48 -14.84 16 19 C 0.06 1.44 5.17 86.32 0.45 1.89 16 20 C -0.11 -2.00 6.09 30.65 0.19 -1.81 16 21 C -0.12 -1.86 6.00 30.67 0.18 -1.67 16 22 C -0.11 -1.70 6.09 30.65 0.19 -1.52 16 23 C 0.06 1.20 5.11 86.32 0.44 1.64 16 24 C -0.07 -2.10 5.90 -19.74 -0.12 -2.22 16 25 C -0.09 -2.10 9.77 71.24 0.70 -1.41 16 26 C -0.10 -3.12 9.37 22.25 0.21 -2.91 16 27 H 0.06 1.58 6.89 -2.39 -0.02 1.56 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.06 2.59 6.58 -2.39 -0.02 2.57 16 31 H 0.02 0.81 8.00 -2.39 -0.02 0.79 16 32 H 0.01 0.60 6.31 -2.39 -0.02 0.58 16 33 H -0.05 -2.82 8.12 -2.38 -0.02 -2.84 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.02 0.80 7.90 -2.39 -0.02 0.78 16 36 H 0.10 3.05 6.54 -2.38 -0.02 3.04 16 37 H 0.10 4.03 7.97 -2.91 -0.02 4.01 16 38 H 0.11 3.71 7.13 -2.91 -0.02 3.69 16 39 H 0.02 0.62 7.55 -2.39 -0.02 0.60 16 40 H 0.06 1.69 8.11 -2.39 -0.02 1.67 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 1.58 8.11 -2.39 -0.02 1.56 16 48 H 0.03 0.61 7.33 -2.39 -0.02 0.59 16 49 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 51 H 0.08 1.71 7.46 -2.39 -0.02 1.69 16 52 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -66.82 400.04 2.12 -64.70 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.86 Total: 19.80 kcal Atomic # 6 Polarization: -37.52 SS G_CDS: 5.37 Total: -32.15 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -6.13 Total: -99.75 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.82 2.12 -64.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827968809.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.135 kcal (2) G-P(sol) polarization free energy of solvation -66.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds