Wall clock time and date at job start Tue Mar 31 2020 10:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38128 * 120.03598 * 2 1 4 4 C 1.38267 * 120.06866 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.92256 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46881 * 90.00057 * 5 4 3 7 7 C 1.46896 * 111.00178 * 66.04709 * 6 5 4 8 8 C 1.46903 * 110.99849 * 190.00038 * 6 5 4 9 9 H 1.09003 * 109.46808 * 300.00462 * 8 6 5 10 10 C 1.53000 * 109.47120 * 60.00056 * 8 6 5 11 11 C 1.50694 * 109.47066 * 180.02562 * 8 6 5 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 8 6 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 8 6 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.38304 * 120.15316 * 0.27293 * 4 3 2 20 20 C 1.38081 * 120.07196 * 359.44716 * 19 4 3 21 21 C 1.38885 * 120.03506 * 179.97438 * 2 1 3 22 22 N 1.39676 * 120.07879 * 0.04691 * 21 2 1 23 23 C 1.46842 * 111.00354 * 244.21315 * 22 21 2 24 24 C 1.53035 * 109.52328 * 174.16069 * 23 22 21 25 25 C 1.53118 * 109.27973 * 59.17699 * 24 23 22 26 26 C 1.53122 * 109.15898 * 302.34519 * 25 24 23 27 27 C 1.46851 * 111.00008 * 119.99763 * 22 21 2 28 28 H 1.09001 * 109.47000 * 89.99860 * 1 2 3 29 29 H 1.08995 * 109.47398 * 210.00413 * 1 2 3 30 30 H 1.09005 * 109.47335 * 330.00822 * 1 2 3 31 31 H 1.07997 * 119.96933 * 359.94666 * 3 2 1 32 32 H 1.09005 * 109.46912 * 330.00278 * 5 4 3 33 33 H 1.08999 * 109.47231 * 209.99976 * 5 4 3 34 34 H 1.09000 * 109.47187 * 183.95237 * 7 6 5 35 35 H 1.08996 * 109.47272 * 303.95406 * 7 6 5 36 36 H 1.09005 * 109.47145 * 63.94894 * 7 6 5 37 37 H 1.08997 * 109.47359 * 180.02562 * 10 8 6 38 38 H 1.09007 * 109.47356 * 300.00024 * 10 8 6 39 39 H 1.09000 * 109.47156 * 59.99749 * 10 8 6 40 40 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 41 41 H 1.07996 * 119.96484 * 179.70585 * 19 4 3 42 42 H 1.08008 * 120.03949 * 180.27234 * 20 19 4 43 43 H 1.09001 * 109.45611 * 294.17251 * 23 22 21 44 44 H 1.08995 * 109.46459 * 54.13568 * 23 22 21 45 45 H 1.08995 * 109.50336 * 299.23078 * 24 23 22 46 46 H 1.09002 * 109.53742 * 179.13850 * 24 23 22 47 47 H 1.09005 * 109.52177 * 182.43946 * 25 24 23 48 48 H 1.08998 * 109.57653 * 62.28576 * 25 24 23 49 49 H 1.09007 * 109.50269 * 297.71063 * 26 25 24 50 50 H 1.08994 * 109.53232 * 177.61884 * 26 25 24 51 51 H 1.09006 * 109.46008 * 305.86238 * 27 22 21 52 52 H 1.09000 * 109.46264 * 65.83514 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 0.0005 5 6 4.3321 2.5032 -0.0001 6 7 4.5756 2.9286 1.3848 7 6 5.4877 2.0015 2.0676 8 6 5.0911 4.3034 1.4302 9 1 6.0291 4.3582 0.8776 10 6 4.0706 5.2519 0.7978 11 6 5.3288 4.7036 2.8634 12 1 5.1176 4.0066 3.6609 13 6 5.8149 5.9601 3.1568 14 7 6.0716 6.8092 2.1857 15 14 6.1089 6.4564 4.9335 16 1 6.6301 7.8463 4.9794 17 1 4.8311 6.3814 5.6863 18 1 7.0997 5.5362 5.5471 19 6 4.2765 0.0011 -0.0046 20 6 3.5915 -1.1978 0.0012 21 6 2.2022 -1.2024 0.0005 22 7 1.5062 -2.4134 0.0001 23 6 1.7601 -3.1668 1.2346 24 6 0.8728 -4.4133 1.2647 25 6 1.1801 -5.2822 0.0420 26 6 0.9541 -4.4590 -1.2292 27 6 1.8391 -3.2112 -1.1870 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 1.6585 2.1311 -0.0009 32 1 3.7417 3.2614 -0.5146 33 1 5.2850 2.3743 -0.5134 34 1 5.5956 2.3000 3.1104 35 1 5.0821 0.9910 2.0191 36 1 6.4623 2.0256 1.5801 37 1 4.4532 6.2720 0.8311 38 1 3.8990 4.9623 -0.2390 39 1 3.1326 5.1971 1.3503 40 1 6.4132 7.6932 2.3922 41 1 5.3564 0.0053 -0.0090 42 1 4.1351 -2.1311 0.0016 43 1 2.8078 -3.4658 1.2685 44 1 1.5338 -2.5389 2.0964 45 1 -0.1752 -4.1146 1.2448 46 1 1.0722 -4.9808 2.1738 47 1 0.5200 -6.1497 0.0364 48 1 2.2175 -5.6143 0.0813 49 1 -0.0927 -4.1609 -1.2884 50 1 1.2117 -5.0585 -2.1022 51 1 1.6700 -2.6155 -2.0840 52 1 2.8863 -3.5102 -1.1416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828041913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:28 Heat of formation + Delta-G solvation = 26.509845 kcal Electronic energy + Delta-G solvation = -26996.953246 eV Core-core repulsion = 23574.734835 eV Total energy + Delta-G solvation = -3422.218410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35081 -38.39521 -36.70458 -33.99917 -32.80115 -32.29932 -31.06735 -30.04859 -28.99756 -26.80519 -26.47815 -24.82623 -24.16134 -23.26498 -22.68823 -21.95088 -20.20123 -19.73716 -19.18615 -17.15089 -16.30606 -15.76498 -15.27490 -15.16076 -14.97374 -14.65589 -14.24831 -14.07188 -13.95053 -13.73458 -13.62965 -13.26657 -13.14155 -12.92379 -12.70474 -12.47407 -12.37469 -11.99987 -11.78971 -11.59296 -11.45899 -11.22101 -11.18552 -11.03846 -10.96970 -10.82396 -10.73151 -10.67557 -10.58254 -10.39597 -10.11417 -10.01509 -9.78843 -8.88644 -8.55113 -8.52031 -8.42228 -8.16655 -7.14625 -6.00203 -4.04537 1.48740 1.61495 3.32816 3.36948 3.40152 3.70789 3.87812 4.42624 4.55268 4.63738 4.65840 4.99704 5.01513 5.05875 5.12723 5.15991 5.27220 5.28585 5.35670 5.36338 5.41107 5.57218 5.61197 5.63383 5.67902 5.69706 5.77376 5.82822 5.85098 5.87955 5.92700 5.99667 6.10082 6.16286 6.18772 6.29868 6.40152 6.46895 6.57701 6.70590 6.80134 6.84575 6.85590 6.99525 7.04655 7.06775 7.16541 7.49928 7.52960 7.73154 7.84030 8.21643 8.33466 8.61026 9.01711 9.60258 11.06574 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.002624 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.755618 B =10667.781220 C =10946.393141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.062 4.062 3 C -0.097 4.097 4 C -0.054 4.054 5 C 0.083 3.917 6 N -0.529 5.529 7 C 0.036 3.964 8 C 0.212 3.788 9 H -0.003 1.003 10 C -0.134 4.134 11 C -0.503 4.503 12 H 0.063 0.937 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.288 1.288 17 H -0.276 1.276 18 H -0.278 1.278 19 C -0.112 4.112 20 C -0.146 4.146 21 C 0.070 3.930 22 N -0.495 5.495 23 C 0.060 3.940 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.116 4.116 27 C 0.061 3.939 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.009 0.991 37 H 0.085 0.915 38 H 0.008 0.992 39 H 0.035 0.965 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.035 0.965 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.065 0.935 51 H 0.074 0.926 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.716 -21.157 -6.942 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.063 4.063 3 C -0.116 4.116 4 C -0.054 4.054 5 C -0.045 4.045 6 N -0.254 5.254 7 C -0.113 4.113 8 C 0.107 3.893 9 H 0.015 0.985 10 C -0.192 4.192 11 C -0.541 4.541 12 H 0.081 0.919 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.214 1.214 17 H -0.202 1.202 18 H -0.204 1.204 19 C -0.132 4.132 20 C -0.166 4.166 21 C -0.023 4.023 22 N -0.216 5.216 23 C -0.067 4.067 24 C -0.154 4.154 25 C -0.159 4.159 26 C -0.154 4.154 27 C -0.066 4.066 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.104 0.896 38 H 0.027 0.973 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.053 0.947 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.084 0.916 51 H 0.093 0.907 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.594 -20.866 -6.732 24.350 hybrid contribution 2.047 0.168 0.572 2.132 sum -8.547 -20.698 -6.160 23.225 Atomic orbital electron populations 1.20602 0.90986 1.02465 1.01771 1.19735 0.96156 0.91305 0.99123 1.20908 0.93559 0.97285 0.99816 1.20002 0.93829 0.94965 0.96629 1.21146 0.97610 0.93049 0.92674 1.62166 1.47361 1.04449 1.11430 1.22259 0.93168 0.95235 1.00591 1.19261 0.91792 0.81734 0.96561 0.98495 1.21865 0.98997 1.03192 0.95113 1.21115 1.42361 0.98935 0.91708 0.91932 1.24932 0.95576 0.96455 0.97289 1.69883 1.45251 1.06961 1.31232 0.86582 0.78547 0.77394 0.85003 1.21368 1.20201 1.20389 1.20895 0.99490 0.91806 1.00977 1.21437 0.94482 0.97881 1.02848 1.18437 0.90009 0.90231 1.03659 1.59471 1.56889 1.02835 1.02453 1.22129 0.97720 0.94747 0.92101 1.21594 1.00681 0.95336 0.97809 1.21582 1.01329 0.98015 0.95000 1.21593 1.00820 0.95469 0.97531 1.22111 0.97299 0.94255 0.92927 0.91894 0.90812 0.92243 0.85690 0.89847 0.95339 0.90760 0.93522 0.97232 0.89627 0.97276 0.94607 0.92948 0.86643 0.87114 0.94706 0.90533 0.91022 0.91552 0.91894 0.92376 0.91023 0.91628 0.90726 0.94745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 9.77 36.01 0.35 -0.82 16 2 C -0.06 -0.86 5.90 -104.42 -0.62 -1.47 16 3 C -0.10 -1.48 9.35 -39.61 -0.37 -1.85 16 4 C -0.05 -0.88 4.88 -104.58 -0.51 -1.39 16 5 C 0.08 1.55 4.93 -4.97 -0.02 1.52 16 6 N -0.53 -11.57 4.61 -237.73 -1.10 -12.67 16 7 C 0.04 0.73 8.91 60.06 0.53 1.27 16 8 C 0.21 5.39 2.06 -68.87 -0.14 5.25 16 9 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 10 C -0.13 -3.26 8.76 37.16 0.33 -2.93 16 11 C -0.50 -13.83 7.93 -34.44 -0.27 -14.10 16 12 H 0.06 1.72 6.39 -52.49 -0.34 1.39 16 13 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 14 N -0.89 -25.53 11.32 55.43 0.63 -24.91 16 15 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 C -0.11 -1.67 7.90 -39.61 -0.31 -1.98 16 20 C -0.15 -1.96 8.70 -39.38 -0.34 -2.30 16 21 C 0.07 0.92 4.66 -83.79 -0.39 0.53 16 22 N -0.50 -5.44 3.57 -171.16 -0.61 -6.05 16 23 C 0.06 0.60 5.17 -3.84 -0.02 0.58 16 24 C -0.12 -0.92 6.09 -26.65 -0.16 -1.09 16 25 C -0.12 -0.87 6.00 -26.61 -0.16 -1.03 16 26 C -0.12 -0.89 6.09 -26.65 -0.16 -1.05 16 27 C 0.06 0.58 5.11 -3.84 -0.02 0.56 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.83 7.46 -51.93 -0.39 0.44 16 30 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 32 H 0.08 1.55 5.77 -51.93 -0.30 1.25 16 33 H 0.03 0.53 8.06 -51.93 -0.42 0.11 16 34 H 0.07 1.61 6.23 -51.93 -0.32 1.29 16 35 H 0.05 0.85 5.91 -51.93 -0.31 0.54 16 36 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 38 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 39 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.12 1.64 8.00 -52.49 -0.42 1.22 16 42 H 0.11 1.32 7.13 -52.48 -0.37 0.95 16 43 H 0.03 0.36 7.55 -51.93 -0.39 -0.03 16 44 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 52 H 0.03 0.34 7.33 -51.93 -0.38 -0.05 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -28.50 392.08 -11.90 -40.41 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -9.32 Total: -0.33 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -2.39 Total: -18.77 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -1.08 Total: -43.63 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.50 -11.90 -40.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828041913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.917 kcal (2) G-P(sol) polarization free energy of solvation -28.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds