Wall clock time and date at job start Tue Mar 31 2020 10:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38128 * 120.03598 * 2 1 4 4 C 1.38267 * 120.06866 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.92256 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46881 * 90.00057 * 5 4 3 7 7 C 1.46896 * 111.00178 * 66.04709 * 6 5 4 8 8 C 1.46903 * 110.99849 * 190.00038 * 6 5 4 9 9 H 1.09003 * 109.46808 * 300.00462 * 8 6 5 10 10 C 1.53000 * 109.47120 * 60.00056 * 8 6 5 11 11 C 1.50694 * 109.47066 * 180.02562 * 8 6 5 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 8 6 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 8 6 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.38304 * 120.15316 * 0.27293 * 4 3 2 20 20 C 1.38081 * 120.07196 * 359.44716 * 19 4 3 21 21 C 1.38885 * 120.03506 * 179.97438 * 2 1 3 22 22 N 1.39676 * 120.07879 * 0.04691 * 21 2 1 23 23 C 1.46842 * 111.00354 * 244.21315 * 22 21 2 24 24 C 1.53035 * 109.52328 * 174.16069 * 23 22 21 25 25 C 1.53118 * 109.27973 * 59.17699 * 24 23 22 26 26 C 1.53122 * 109.15898 * 302.34519 * 25 24 23 27 27 C 1.46851 * 111.00008 * 119.99763 * 22 21 2 28 28 H 1.09001 * 109.47000 * 89.99860 * 1 2 3 29 29 H 1.08995 * 109.47398 * 210.00413 * 1 2 3 30 30 H 1.09005 * 109.47335 * 330.00822 * 1 2 3 31 31 H 1.07997 * 119.96933 * 359.94666 * 3 2 1 32 32 H 1.09005 * 109.46912 * 330.00278 * 5 4 3 33 33 H 1.08999 * 109.47231 * 209.99976 * 5 4 3 34 34 H 1.09000 * 109.47187 * 183.95237 * 7 6 5 35 35 H 1.08996 * 109.47272 * 303.95406 * 7 6 5 36 36 H 1.09005 * 109.47145 * 63.94894 * 7 6 5 37 37 H 1.08997 * 109.47359 * 180.02562 * 10 8 6 38 38 H 1.09007 * 109.47356 * 300.00024 * 10 8 6 39 39 H 1.09000 * 109.47156 * 59.99749 * 10 8 6 40 40 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 41 41 H 1.07996 * 119.96484 * 179.70585 * 19 4 3 42 42 H 1.08008 * 120.03949 * 180.27234 * 20 19 4 43 43 H 1.09001 * 109.45611 * 294.17251 * 23 22 21 44 44 H 1.08995 * 109.46459 * 54.13568 * 23 22 21 45 45 H 1.08995 * 109.50336 * 299.23078 * 24 23 22 46 46 H 1.09002 * 109.53742 * 179.13850 * 24 23 22 47 47 H 1.09005 * 109.52177 * 182.43946 * 25 24 23 48 48 H 1.08998 * 109.57653 * 62.28576 * 25 24 23 49 49 H 1.09007 * 109.50269 * 297.71063 * 26 25 24 50 50 H 1.08994 * 109.53232 * 177.61884 * 26 25 24 51 51 H 1.09006 * 109.46008 * 305.86238 * 27 22 21 52 52 H 1.09000 * 109.46264 * 65.83514 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 0.0005 5 6 4.3321 2.5032 -0.0001 6 7 4.5756 2.9286 1.3848 7 6 5.4877 2.0015 2.0676 8 6 5.0911 4.3034 1.4302 9 1 6.0291 4.3582 0.8776 10 6 4.0706 5.2519 0.7978 11 6 5.3288 4.7036 2.8634 12 1 5.1176 4.0066 3.6609 13 6 5.8149 5.9601 3.1568 14 7 6.0716 6.8092 2.1857 15 14 6.1089 6.4564 4.9335 16 1 6.6301 7.8463 4.9794 17 1 4.8311 6.3814 5.6863 18 1 7.0997 5.5362 5.5471 19 6 4.2765 0.0011 -0.0046 20 6 3.5915 -1.1978 0.0012 21 6 2.2022 -1.2024 0.0005 22 7 1.5062 -2.4134 0.0001 23 6 1.7601 -3.1668 1.2346 24 6 0.8728 -4.4133 1.2647 25 6 1.1801 -5.2822 0.0420 26 6 0.9541 -4.4590 -1.2292 27 6 1.8391 -3.2112 -1.1870 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 1.6585 2.1311 -0.0009 32 1 3.7417 3.2614 -0.5146 33 1 5.2850 2.3743 -0.5134 34 1 5.5956 2.3000 3.1104 35 1 5.0821 0.9910 2.0191 36 1 6.4623 2.0256 1.5801 37 1 4.4532 6.2720 0.8311 38 1 3.8990 4.9623 -0.2390 39 1 3.1326 5.1971 1.3503 40 1 6.4132 7.6932 2.3922 41 1 5.3564 0.0053 -0.0090 42 1 4.1351 -2.1311 0.0016 43 1 2.8078 -3.4658 1.2685 44 1 1.5338 -2.5389 2.0964 45 1 -0.1752 -4.1146 1.2448 46 1 1.0722 -4.9808 2.1738 47 1 0.5200 -6.1497 0.0364 48 1 2.2175 -5.6143 0.0813 49 1 -0.0927 -4.1609 -1.2884 50 1 1.2117 -5.0585 -2.1022 51 1 1.6700 -2.6155 -2.0840 52 1 2.8863 -3.5102 -1.1416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828041913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:27 Heat of formation + Delta-G solvation = 12.941253 kcal Electronic energy + Delta-G solvation = -26997.541624 eV Core-core repulsion = 23574.734835 eV Total energy + Delta-G solvation = -3422.806789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34272 -39.54234 -38.19419 -35.29335 -34.29207 -33.50988 -31.75699 -31.46907 -30.72567 -28.25399 -27.60128 -26.58777 -25.49089 -24.07077 -23.95394 -23.00836 -21.64440 -20.83994 -20.41239 -18.37013 -18.07114 -17.22640 -16.70858 -16.15509 -16.03485 -15.83309 -15.66422 -15.44639 -15.14391 -14.88364 -14.55488 -14.34314 -14.29474 -14.03460 -13.94616 -13.82905 -13.59134 -13.18254 -13.12433 -12.98828 -12.89890 -12.72240 -12.55419 -12.38968 -12.23874 -12.13006 -12.09584 -12.06423 -11.89713 -11.60770 -11.57246 -11.34335 -11.22605 -10.90074 -10.52339 -9.64899 -9.43601 -9.32456 -8.92491 -8.11542 -6.23433 0.34286 0.49021 1.41877 1.43675 1.51257 2.41558 2.71495 2.85397 3.16562 3.53438 3.84560 3.91630 3.98620 3.99571 4.01047 4.04725 4.32573 4.35145 4.43841 4.45281 4.50815 4.54390 4.59691 4.66366 4.68814 4.73584 4.78740 4.82870 4.92150 4.92608 4.93322 4.96975 5.02470 5.03317 5.05833 5.09738 5.14629 5.23514 5.25319 5.28588 5.38654 5.46812 5.48914 5.50966 5.65182 5.71666 5.76136 5.79875 5.96071 6.06302 6.25166 6.37815 6.50803 6.71053 6.90490 7.45460 8.94160 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.002624 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.755618 B =10667.781220 C =10946.393141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.068 4.068 3 C -0.106 4.106 4 C -0.071 4.071 5 C 0.089 3.911 6 N -0.536 5.536 7 C 0.043 3.957 8 C 0.217 3.783 9 H -0.038 1.038 10 C -0.121 4.121 11 C -0.520 4.520 12 H 0.058 0.942 13 C 0.011 3.989 14 N -0.920 5.920 15 Si 0.960 3.040 16 H -0.283 1.283 17 H -0.272 1.272 18 H -0.272 1.272 19 C -0.117 4.117 20 C -0.144 4.144 21 C 0.076 3.924 22 N -0.497 5.497 23 C 0.058 3.942 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.112 4.112 27 C 0.059 3.941 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.026 0.974 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.006 0.994 37 H 0.061 0.939 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.262 0.738 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.033 0.967 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.080 0.920 51 H 0.069 0.931 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.808 -23.459 -6.695 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.069 4.069 3 C -0.125 4.125 4 C -0.072 4.072 5 C -0.039 4.039 6 N -0.260 5.260 7 C -0.105 4.105 8 C 0.110 3.890 9 H -0.020 1.020 10 C -0.180 4.180 11 C -0.558 4.558 12 H 0.076 0.924 13 C -0.187 4.187 14 N -0.560 5.560 15 Si 0.785 3.215 16 H -0.209 1.209 17 H -0.197 1.197 18 H -0.198 1.198 19 C -0.137 4.137 20 C -0.164 4.164 21 C -0.018 4.018 22 N -0.219 5.219 23 C -0.068 4.068 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.149 4.149 27 C -0.067 4.067 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.098 0.902 51 H 0.087 0.913 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.694 -23.192 -6.492 26.772 hybrid contribution 2.353 0.787 0.435 2.519 sum -9.342 -22.405 -6.056 25.018 Atomic orbital electron populations 1.20590 0.89377 1.02736 1.02541 1.19978 0.97384 0.90990 0.98562 1.20960 0.93278 0.97972 1.00275 1.19794 0.94167 0.94118 0.99119 1.21088 0.97732 0.94402 0.90630 1.62100 1.47084 1.03117 1.13709 1.22187 0.93017 0.95994 0.99297 1.19066 0.90592 0.84106 0.95248 1.02036 1.21674 0.98211 1.01575 0.96491 1.21384 1.42623 0.99184 0.92624 0.92399 1.25711 0.95297 0.96440 1.01277 1.70012 1.45684 1.07188 1.33082 0.85586 0.78561 0.77139 0.80192 1.20865 1.19704 1.19756 1.20947 0.99740 0.91843 1.01131 1.21602 0.94792 0.97941 1.02084 1.18638 0.90060 0.91108 1.01953 1.59546 1.56442 1.02482 1.03401 1.22169 0.98170 0.95326 0.91139 1.21574 0.99991 0.94503 0.98886 1.21583 1.01763 0.98192 0.94174 1.21576 1.00190 0.94679 0.98483 1.22178 0.97802 0.94808 0.91938 0.90793 0.90456 0.92001 0.85942 0.90247 0.95610 0.92427 0.91194 0.97566 0.92050 0.94963 0.94917 0.92899 0.86326 0.85490 0.94895 0.91730 0.91178 0.90393 0.90446 0.92279 0.91188 0.90172 0.91296 0.94801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 9.77 71.24 0.70 -1.35 16 2 C -0.07 -1.79 5.90 -19.74 -0.12 -1.91 16 3 C -0.11 -3.19 9.35 22.25 0.21 -2.98 16 4 C -0.07 -2.31 4.88 -19.84 -0.10 -2.40 16 5 C 0.09 3.35 4.93 85.56 0.42 3.77 16 6 N -0.54 -23.76 4.61 -906.04 -4.18 -27.94 16 7 C 0.04 1.78 8.91 127.69 1.14 2.92 16 8 C 0.22 11.30 2.06 44.17 0.09 11.39 16 9 H -0.04 -2.20 8.14 -2.39 -0.02 -2.22 16 10 C -0.12 -6.05 8.76 71.98 0.63 -5.42 16 11 C -0.52 -29.13 7.93 25.60 0.20 -28.93 16 12 H 0.06 3.23 6.39 -2.91 -0.02 3.21 16 13 C 0.01 0.64 5.30 84.66 0.45 1.09 16 14 N -0.92 -53.50 11.32 21.45 0.24 -53.25 16 15 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 C -0.12 -3.38 7.90 22.25 0.18 -3.20 16 20 C -0.14 -3.63 8.70 22.40 0.19 -3.44 16 21 C 0.08 1.88 4.66 38.21 0.18 2.06 16 22 N -0.50 -9.95 3.57 -695.41 -2.48 -12.44 16 23 C 0.06 1.06 5.17 86.33 0.45 1.51 16 24 C -0.11 -1.50 6.09 30.65 0.19 -1.31 16 25 C -0.12 -1.36 6.00 30.67 0.18 -1.18 16 26 C -0.11 -1.39 6.09 30.64 0.19 -1.21 16 27 C 0.06 1.00 5.11 86.32 0.44 1.44 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.60 7.46 -2.39 -0.02 1.58 16 30 H 0.06 1.29 8.09 -2.38 -0.02 1.27 16 31 H 0.12 3.67 8.06 -2.91 -0.02 3.64 16 32 H 0.08 2.99 5.77 -2.38 -0.01 2.98 16 33 H 0.03 0.97 8.06 -2.39 -0.02 0.96 16 34 H 0.06 2.53 6.23 -2.39 -0.01 2.52 16 35 H 0.07 2.51 5.91 -2.39 -0.01 2.50 16 36 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 37 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 38 H 0.03 1.40 6.20 -2.38 -0.01 1.39 16 39 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.12 3.28 8.00 -2.91 -0.02 3.26 16 42 H 0.13 2.76 7.13 -2.91 -0.02 2.74 16 43 H 0.03 0.61 7.55 -2.39 -0.02 0.59 16 44 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 45 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 50 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.07 1.25 8.11 -2.38 -0.02 1.23 16 52 H 0.03 0.58 7.33 -2.39 -0.02 0.56 16 Total: -1.00 -61.10 392.08 2.09 -59.01 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.87 Total: 17.54 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 5.62 Total: -29.15 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -6.42 Total: -93.63 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -61.10 2.09 -59.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828041913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.955 kcal (2) G-P(sol) polarization free energy of solvation -61.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds