Wall clock time and date at job start Tue Mar 31 2020 11:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46697 * 2 1 4 4 C 1.52997 * 109.47169 * 119.99763 * 2 1 3 5 5 C 1.52997 * 109.47022 * 175.00362 * 4 2 1 6 6 H 1.09002 * 115.55172 * 29.33290 * 5 4 2 7 7 C 1.53076 * 117.51247 * 243.60768 * 5 4 2 8 8 C 1.52997 * 59.98601 * 252.52039 * 7 5 4 9 9 H 1.09003 * 117.49697 * 107.49880 * 8 7 5 10 10 N 1.46896 * 117.50412 * 252.49910 * 8 7 5 11 11 C 1.46897 * 111.00133 * 223.74717 * 10 8 7 12 12 C 1.50704 * 109.47069 * 179.97438 * 11 10 8 13 13 C 1.38284 * 119.92208 * 90.00273 * 12 11 10 14 14 C 1.38105 * 120.07205 * 180.02562 * 13 12 11 15 15 C 1.38915 * 119.92799 * 359.97438 * 14 13 12 16 16 N 1.39666 * 120.07686 * 179.72641 * 15 14 13 17 17 C 1.46504 * 120.00221 * 0.02562 * 16 15 14 18 18 C 1.46503 * 120.00126 * 180.02562 * 16 15 14 19 19 C 1.50698 * 109.47293 * 89.99810 * 18 16 15 20 20 H 1.07999 * 119.99913 * 0.02562 * 19 18 16 21 21 C 1.37877 * 120.00031 * 180.02562 * 19 18 16 22 22 N 1.31516 * 120.00110 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99980 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46830 * 90.00304 * 23 21 19 25 25 H 1.48499 * 109.47166 * 209.99797 * 23 21 19 26 26 H 1.48500 * 109.47178 * 330.00198 * 23 21 19 27 27 C 1.38912 * 119.84585 * 0.02562 * 15 14 13 28 28 C 1.38103 * 119.93079 * 359.97438 * 27 15 14 29 29 H 1.09007 * 109.47536 * 299.99629 * 1 2 3 30 30 H 1.08995 * 109.47122 * 60.00272 * 1 2 3 31 31 H 1.09006 * 109.47134 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47273 * 240.00231 * 2 1 3 33 33 H 1.09002 * 109.46885 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47113 * 299.99734 * 3 2 1 35 35 H 1.08994 * 109.47070 * 60.00107 * 3 2 1 36 36 H 1.09000 * 109.47351 * 55.00063 * 4 2 1 37 37 H 1.09002 * 109.47395 * 295.00107 * 4 2 1 38 38 H 1.09002 * 117.51579 * 145.04997 * 7 5 4 39 39 H 1.08997 * 117.49276 * 0.02562 * 7 5 4 40 40 H 1.00897 * 110.99494 * 347.69545 * 10 8 7 41 41 H 1.09001 * 109.47378 * 59.99956 * 11 10 8 42 42 H 1.08999 * 109.47687 * 299.99455 * 11 10 8 43 43 H 1.07992 * 119.96794 * 0.03996 * 13 12 11 44 44 H 1.07996 * 120.04076 * 179.97438 * 14 13 12 45 45 H 1.08998 * 109.46980 * 89.99921 * 17 16 15 46 46 H 1.09001 * 109.47057 * 210.00449 * 17 16 15 47 47 H 1.09000 * 109.46706 * 329.99881 * 17 16 15 48 48 H 1.09000 * 109.47300 * 210.00119 * 18 16 15 49 49 H 1.08997 * 109.46715 * 330.00107 * 18 16 15 50 50 H 0.96995 * 120.00086 * 180.02562 * 22 21 19 51 51 H 1.08007 * 120.03675 * 179.97438 * 27 15 14 52 52 H 1.07993 * 119.96648 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 1 4.0719 -0.0351 0.6424 7 6 4.1704 -2.2349 1.1157 8 6 4.2803 -1.4195 2.4056 9 1 3.6646 -1.7285 3.2504 10 7 5.5979 -0.8688 2.7499 11 6 5.8920 -1.0600 4.1764 12 6 7.2488 -0.4844 4.4911 13 6 7.3637 0.8372 4.8814 14 6 8.6056 1.3680 5.1700 15 6 9.7399 0.5726 5.0684 16 7 10.9980 1.1078 5.3540 17 6 11.1224 2.5094 5.7619 18 6 12.1932 0.2676 5.2458 19 6 12.7491 0.3623 3.8483 20 1 12.2611 0.9863 3.1142 21 6 13.8806 -0.3476 3.5068 22 7 14.3660 -0.2646 2.2873 23 14 14.7251 -1.4265 4.7767 24 1 14.1517 -2.7953 4.7232 25 1 16.1799 -1.4875 4.4855 26 1 14.5149 -0.8542 6.1308 27 6 9.6208 -0.7546 4.6761 28 6 8.3759 -1.2791 4.3889 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6054 -1.7197 1.2952 37 1 1.7516 -0.1582 2.1370 38 1 5.0759 -2.3628 0.5226 39 1 3.4822 -3.0801 1.1114 40 1 6.3207 -1.2740 2.1742 41 1 5.8867 -2.1249 4.4089 42 1 5.1346 -0.5537 4.7747 43 1 6.4815 1.4549 4.9608 44 1 8.6949 2.4004 5.4744 45 1 11.0477 2.5800 6.8470 46 1 12.0881 2.8976 5.4381 47 1 10.3240 3.0932 5.3039 48 1 12.9433 0.6092 5.9591 49 1 11.9304 -0.7677 5.4628 50 1 15.1618 -0.7643 2.0469 51 1 10.5007 -1.3757 4.5956 52 1 8.2825 -2.3110 4.0842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839162915.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:55 Heat of formation + Delta-G solvation = 40.651954 kcal Electronic energy + Delta-G solvation = -25445.679192 eV Core-core repulsion = 22024.074030 eV Total energy + Delta-G solvation = -3421.605162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.21222 -38.62320 -36.46133 -35.59831 -33.35816 -32.51712 -30.54905 -29.57179 -28.31632 -27.51049 -27.25922 -25.64563 -23.81961 -22.10691 -21.95147 -21.36409 -20.84246 -19.99360 -19.54453 -16.95310 -16.76070 -16.09925 -15.73020 -15.29814 -14.99966 -14.53057 -14.40847 -14.24090 -14.06221 -13.73989 -13.41317 -13.23710 -13.05008 -12.94981 -12.75496 -12.63010 -12.42272 -12.36446 -11.91878 -11.84889 -11.84030 -11.62296 -11.45831 -11.28779 -11.06095 -11.00039 -10.89336 -10.75917 -10.61737 -10.47290 -10.27159 -10.06448 -9.97920 -9.59472 -8.92182 -8.67010 -8.32748 -8.15606 -6.42595 -6.15480 -4.15519 2.05827 2.15732 3.20322 3.28303 3.28999 3.66439 3.99934 4.06976 4.31039 4.49974 4.62493 4.66405 4.70290 4.85018 4.95153 5.07174 5.14778 5.23662 5.25010 5.34654 5.37153 5.47449 5.50380 5.55359 5.56432 5.60106 5.64524 5.66555 5.72388 5.77976 5.79268 5.83927 5.94257 5.94886 6.00696 6.03762 6.16056 6.22575 6.28033 6.30909 6.36716 6.54314 6.73138 6.74037 6.97164 7.04364 7.12497 7.21170 7.40686 7.51054 7.53180 8.03524 8.32924 8.50369 8.92406 9.44258 10.97518 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.002180 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.229732 B =12841.839771 C =13243.037184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.082 4.082 5 C -0.142 4.142 6 H 0.110 0.890 7 C -0.206 4.206 8 C 0.029 3.971 9 H 0.105 0.895 10 N -0.654 5.654 11 C 0.118 3.882 12 C -0.172 4.172 13 C -0.050 4.050 14 C -0.219 4.219 15 C 0.241 3.759 16 N -0.611 5.611 17 C 0.098 3.902 18 C 0.220 3.780 19 C -0.534 4.534 20 H 0.077 0.923 21 C 0.072 3.928 22 N -0.894 5.894 23 Si 0.872 3.128 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.266 1.266 27 C -0.188 4.188 28 C -0.066 4.066 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.345 0.655 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.036 0.964 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.028 0.972 49 H 0.027 0.973 50 H 0.265 0.735 51 H 0.128 0.872 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.679 -0.949 1.206 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.120 4.120 5 C -0.162 4.162 6 H 0.128 0.872 7 C -0.245 4.245 8 C -0.082 4.082 9 H 0.122 0.878 10 N -0.284 5.284 11 C -0.010 4.010 12 C -0.175 4.175 13 C -0.069 4.069 14 C -0.242 4.242 15 C 0.135 3.865 16 N -0.317 5.317 17 C -0.046 4.046 18 C 0.099 3.901 19 C -0.573 4.573 20 H 0.095 0.905 21 C -0.131 4.131 22 N -0.532 5.532 23 Si 0.699 3.301 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.190 1.190 27 C -0.210 4.210 28 C -0.086 4.086 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.165 0.835 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.055 0.945 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.046 0.954 49 H 0.045 0.955 50 H 0.075 0.925 51 H 0.146 0.854 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.503 -0.275 1.251 23.538 hybrid contribution 0.934 -1.507 0.347 1.807 sum -22.569 -1.782 1.598 22.695 Atomic orbital electron populations 1.21851 0.95506 1.01484 1.01672 1.21072 0.95228 0.96555 0.98419 1.21892 1.01642 0.95684 1.01416 1.21216 0.92729 1.00141 0.97867 1.22684 0.94673 0.96466 1.02353 0.87208 1.23624 1.03576 0.94902 1.02378 1.22520 0.93493 1.00646 0.91567 0.87752 1.60299 1.02042 1.60846 1.05259 1.20682 0.94612 0.97635 0.88092 1.19192 0.93711 0.95057 1.09539 1.20513 0.96108 0.94002 0.96302 1.20576 0.91795 0.99640 1.12151 1.17928 0.85286 0.92216 0.91073 1.46713 1.04138 1.10297 1.70514 1.21499 1.02358 0.82819 0.97883 1.19659 0.82496 0.90294 0.97647 1.21478 1.10986 1.29065 0.95740 0.90539 1.24908 0.96688 0.96317 0.95165 1.69901 1.22987 1.42009 1.18339 0.86913 0.79310 0.81530 0.82349 1.19930 1.20949 1.19028 1.20782 0.97921 0.94865 1.07460 1.20659 0.91822 0.98453 0.97632 0.92762 0.92813 0.92902 0.91249 0.92072 0.93081 0.92764 0.92171 0.91659 0.88794 0.89078 0.83470 0.95086 0.91016 0.87139 0.86743 0.94533 0.91259 0.92338 0.95442 0.95520 0.92507 0.85443 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 2 C -0.09 -0.70 2.92 -90.62 -0.26 -0.97 16 3 C -0.15 -1.16 9.01 37.16 0.33 -0.83 16 4 C -0.08 -0.65 4.96 -26.73 -0.13 -0.78 16 5 C -0.14 -1.33 5.45 -90.58 -0.49 -1.83 16 6 H 0.11 1.16 6.38 -51.93 -0.33 0.83 16 7 C -0.21 -1.89 9.88 -26.69 -0.26 -2.15 16 8 C 0.03 0.29 6.03 -67.71 -0.41 -0.12 16 9 H 0.10 0.99 7.90 -51.93 -0.41 0.58 16 10 N -0.65 -7.97 6.77 -107.99 -0.73 -8.71 16 11 C 0.12 1.46 5.66 -4.98 -0.03 1.43 16 12 C -0.17 -2.62 5.39 -104.58 -0.56 -3.18 16 13 C -0.05 -0.78 9.69 -39.61 -0.38 -1.16 16 14 C -0.22 -3.77 9.21 -39.38 -0.36 -4.13 16 15 C 0.24 4.80 6.55 -83.79 -0.55 4.25 16 16 N -0.61 -12.75 2.99 -181.00 -0.54 -13.29 16 17 C 0.10 1.68 10.19 59.85 0.61 2.29 16 18 C 0.22 5.17 3.98 -5.19 -0.02 5.15 16 19 C -0.53 -14.81 9.94 -34.44 -0.34 -15.15 16 20 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 21 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 22 N -0.89 -26.93 13.96 55.43 0.77 -26.15 16 23 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 27 C -0.19 -3.70 9.21 -39.38 -0.36 -4.06 16 28 C -0.07 -1.10 9.69 -39.61 -0.38 -1.49 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.53 6.40 -51.93 -0.33 0.19 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.44 7.88 -51.93 -0.41 0.03 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.09 0.74 8.03 -51.93 -0.42 0.33 16 40 H 0.35 4.37 8.51 -39.29 -0.33 4.03 16 41 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 42 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 43 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.11 1.78 6.15 -52.49 -0.32 1.46 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 47 H 0.06 0.90 6.20 -51.93 -0.32 0.58 16 48 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 49 H 0.03 0.62 5.63 -51.93 -0.29 0.33 16 50 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.13 2.70 6.15 -52.48 -0.32 2.38 16 52 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 410.66 15.07 6.19 6.19 Total: -1.00 -29.58 410.66 -11.71 -41.29 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -9.36 Total: 6.09 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -3.37 Total: -21.41 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.50 Total: -48.15 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.58 -11.71 -41.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839162915.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.938 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds