Wall clock time and date at job start Tue Mar 31 2020 11:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46697 * 2 1 4 4 C 1.52997 * 109.47169 * 119.99763 * 2 1 3 5 5 C 1.52997 * 109.47022 * 175.00362 * 4 2 1 6 6 H 1.09002 * 115.55172 * 29.33290 * 5 4 2 7 7 C 1.53076 * 117.51247 * 243.60768 * 5 4 2 8 8 C 1.52997 * 59.98601 * 252.52039 * 7 5 4 9 9 H 1.09003 * 117.49697 * 107.49880 * 8 7 5 10 10 N 1.46896 * 117.50412 * 252.49910 * 8 7 5 11 11 C 1.46897 * 111.00133 * 223.74717 * 10 8 7 12 12 C 1.50704 * 109.47069 * 179.97438 * 11 10 8 13 13 C 1.38284 * 119.92208 * 90.00273 * 12 11 10 14 14 C 1.38105 * 120.07205 * 180.02562 * 13 12 11 15 15 C 1.38915 * 119.92799 * 359.97438 * 14 13 12 16 16 N 1.39666 * 120.07686 * 179.72641 * 15 14 13 17 17 C 1.46504 * 120.00221 * 0.02562 * 16 15 14 18 18 C 1.46503 * 120.00126 * 180.02562 * 16 15 14 19 19 C 1.50698 * 109.47293 * 89.99810 * 18 16 15 20 20 H 1.07999 * 119.99913 * 0.02562 * 19 18 16 21 21 C 1.37877 * 120.00031 * 180.02562 * 19 18 16 22 22 N 1.31516 * 120.00110 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99980 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46830 * 90.00304 * 23 21 19 25 25 H 1.48499 * 109.47166 * 209.99797 * 23 21 19 26 26 H 1.48500 * 109.47178 * 330.00198 * 23 21 19 27 27 C 1.38912 * 119.84585 * 0.02562 * 15 14 13 28 28 C 1.38103 * 119.93079 * 359.97438 * 27 15 14 29 29 H 1.09007 * 109.47536 * 299.99629 * 1 2 3 30 30 H 1.08995 * 109.47122 * 60.00272 * 1 2 3 31 31 H 1.09006 * 109.47134 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47273 * 240.00231 * 2 1 3 33 33 H 1.09002 * 109.46885 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47113 * 299.99734 * 3 2 1 35 35 H 1.08994 * 109.47070 * 60.00107 * 3 2 1 36 36 H 1.09000 * 109.47351 * 55.00063 * 4 2 1 37 37 H 1.09002 * 109.47395 * 295.00107 * 4 2 1 38 38 H 1.09002 * 117.51579 * 145.04997 * 7 5 4 39 39 H 1.08997 * 117.49276 * 0.02562 * 7 5 4 40 40 H 1.00897 * 110.99494 * 347.69545 * 10 8 7 41 41 H 1.09001 * 109.47378 * 59.99956 * 11 10 8 42 42 H 1.08999 * 109.47687 * 299.99455 * 11 10 8 43 43 H 1.07992 * 119.96794 * 0.03996 * 13 12 11 44 44 H 1.07996 * 120.04076 * 179.97438 * 14 13 12 45 45 H 1.08998 * 109.46980 * 89.99921 * 17 16 15 46 46 H 1.09001 * 109.47057 * 210.00449 * 17 16 15 47 47 H 1.09000 * 109.46706 * 329.99881 * 17 16 15 48 48 H 1.09000 * 109.47300 * 210.00119 * 18 16 15 49 49 H 1.08997 * 109.46715 * 330.00107 * 18 16 15 50 50 H 0.96995 * 120.00086 * 180.02562 * 22 21 19 51 51 H 1.08007 * 120.03675 * 179.97438 * 27 15 14 52 52 H 1.07993 * 119.96648 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 1 4.0719 -0.0351 0.6424 7 6 4.1704 -2.2349 1.1157 8 6 4.2803 -1.4195 2.4056 9 1 3.6646 -1.7285 3.2504 10 7 5.5979 -0.8688 2.7499 11 6 5.8920 -1.0600 4.1764 12 6 7.2488 -0.4844 4.4911 13 6 7.3637 0.8372 4.8814 14 6 8.6056 1.3680 5.1700 15 6 9.7399 0.5726 5.0684 16 7 10.9980 1.1078 5.3540 17 6 11.1224 2.5094 5.7619 18 6 12.1932 0.2676 5.2458 19 6 12.7491 0.3623 3.8483 20 1 12.2611 0.9863 3.1142 21 6 13.8806 -0.3476 3.5068 22 7 14.3660 -0.2646 2.2873 23 14 14.7251 -1.4265 4.7767 24 1 14.1517 -2.7953 4.7232 25 1 16.1799 -1.4875 4.4855 26 1 14.5149 -0.8542 6.1308 27 6 9.6208 -0.7546 4.6761 28 6 8.3759 -1.2791 4.3889 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6054 -1.7197 1.2952 37 1 1.7516 -0.1582 2.1370 38 1 5.0759 -2.3628 0.5226 39 1 3.4822 -3.0801 1.1114 40 1 6.3207 -1.2740 2.1742 41 1 5.8867 -2.1249 4.4089 42 1 5.1346 -0.5537 4.7747 43 1 6.4815 1.4549 4.9608 44 1 8.6949 2.4004 5.4744 45 1 11.0477 2.5800 6.8470 46 1 12.0881 2.8976 5.4381 47 1 10.3240 3.0932 5.3039 48 1 12.9433 0.6092 5.9591 49 1 11.9304 -0.7677 5.4628 50 1 15.1618 -0.7643 2.0469 51 1 10.5007 -1.3757 4.5956 52 1 8.2825 -2.3110 4.0842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839162915.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:54 Heat of formation + Delta-G solvation = 25.646737 kcal Electronic energy + Delta-G solvation = -25446.329867 eV Core-core repulsion = 22024.074030 eV Total energy + Delta-G solvation = -3422.255838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.51593 -39.46431 -37.67664 -36.53280 -34.85788 -34.10981 -31.98872 -30.92331 -29.97845 -28.13966 -27.94405 -26.98733 -25.32636 -23.54170 -22.92587 -22.63604 -21.59998 -20.98692 -20.59768 -19.08759 -18.19783 -17.01306 -16.84157 -16.54618 -16.24499 -15.74256 -15.66526 -15.32716 -15.04363 -14.87943 -14.71018 -14.59111 -14.35770 -14.29800 -13.89183 -13.54335 -13.37283 -13.33297 -13.14632 -13.07674 -12.98922 -12.79558 -12.60621 -12.46886 -12.42212 -12.11826 -12.01700 -11.96126 -11.76120 -11.61444 -11.47195 -11.41303 -11.19900 -10.83351 -10.74594 -10.41310 -9.68406 -9.05472 -8.34118 -7.92304 -6.39508 0.69080 0.80804 1.33499 1.34313 1.45091 2.29617 2.53150 2.85622 2.99511 3.03269 3.39155 3.91870 3.96611 4.02450 4.05154 4.13311 4.19530 4.22959 4.28057 4.33864 4.40986 4.54427 4.58113 4.61397 4.67518 4.70420 4.79432 4.81796 4.82442 4.86565 4.89754 4.89915 4.95591 5.00468 5.03541 5.05397 5.08011 5.14584 5.19550 5.29235 5.33941 5.44556 5.44810 5.56477 5.58709 5.58793 5.63763 5.90424 6.08587 6.17555 6.24980 6.41356 6.59084 6.69144 6.86029 7.25864 8.83298 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.002180 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.229732 B =12841.839771 C =13243.037184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.076 4.076 5 C -0.141 4.141 6 H 0.094 0.906 7 C -0.200 4.200 8 C 0.023 3.977 9 H 0.117 0.883 10 N -0.666 5.666 11 C 0.123 3.877 12 C -0.160 4.160 13 C -0.050 4.050 14 C -0.217 4.217 15 C 0.211 3.789 16 N -0.628 5.628 17 C 0.097 3.903 18 C 0.231 3.769 19 C -0.535 4.535 20 H 0.024 0.976 21 C 0.011 3.989 22 N -0.946 5.946 23 Si 0.947 3.053 24 H -0.265 1.265 25 H -0.280 1.280 26 H -0.243 1.243 27 C -0.216 4.216 28 C -0.068 4.068 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.340 0.660 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.138 0.862 44 H 0.132 0.868 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.073 0.927 48 H 0.036 0.964 49 H 0.030 0.970 50 H 0.268 0.732 51 H 0.101 0.899 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.105 -1.603 2.913 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.114 4.114 5 C -0.160 4.160 6 H 0.112 0.888 7 C -0.239 4.239 8 C -0.088 4.088 9 H 0.134 0.866 10 N -0.296 5.296 11 C -0.005 4.005 12 C -0.163 4.163 13 C -0.069 4.069 14 C -0.240 4.240 15 C 0.107 3.893 16 N -0.336 5.336 17 C -0.046 4.046 18 C 0.109 3.891 19 C -0.574 4.574 20 H 0.042 0.958 21 C -0.187 4.187 22 N -0.586 5.586 23 Si 0.770 3.230 24 H -0.190 1.190 25 H -0.206 1.206 26 H -0.167 1.167 27 C -0.239 4.239 28 C -0.088 4.088 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.159 0.841 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.156 0.844 44 H 0.150 0.850 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.047 0.953 50 H 0.077 0.923 51 H 0.120 0.880 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -25.981 -0.910 2.970 26.166 hybrid contribution 1.527 -1.253 -0.308 1.999 sum -24.454 -2.163 2.663 24.693 Atomic orbital electron populations 1.21827 0.94524 1.01975 1.01953 1.21062 0.96020 0.96051 0.98082 1.21883 1.00831 0.96202 1.01663 1.21186 0.91504 1.00707 0.97989 1.22671 0.95550 0.96152 1.01669 0.88771 1.23641 1.03521 0.95268 1.01478 1.22587 0.92621 1.01294 0.92268 0.86551 1.60284 1.02843 1.61464 1.04960 1.20664 0.93018 0.98276 0.88507 1.19540 0.94644 0.94794 1.07279 1.20884 0.96414 0.94463 0.95140 1.20821 0.91493 1.00209 1.11440 1.18222 0.85728 0.92774 0.92609 1.46693 1.03670 1.11331 1.71923 1.21637 1.02227 0.81213 0.99541 1.19342 0.83806 0.91224 0.94758 1.21655 1.10850 1.27897 0.97014 0.95796 1.25889 0.97470 0.97921 0.97460 1.70068 1.23912 1.43673 1.20923 0.85724 0.77771 0.79434 0.80113 1.19013 1.20564 1.16650 1.20786 0.98323 0.95173 1.09634 1.20863 0.91261 0.99548 0.97096 0.92545 0.92506 0.92311 0.91690 0.93296 0.92635 0.92732 0.91250 0.91624 0.89543 0.87660 0.84131 0.93991 0.89536 0.84375 0.85039 0.91933 0.92573 0.90878 0.94622 0.95251 0.92323 0.88044 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.19 71.98 0.66 -0.93 16 2 C -0.09 -1.25 2.92 -10.79 -0.03 -1.28 16 3 C -0.15 -2.18 9.01 71.98 0.65 -1.53 16 4 C -0.08 -1.05 4.96 30.59 0.15 -0.90 16 5 C -0.14 -2.43 5.45 -10.77 -0.06 -2.49 16 6 H 0.09 1.95 6.38 -2.39 -0.02 1.93 16 7 C -0.20 -3.32 9.88 30.62 0.30 -3.02 16 8 C 0.02 0.41 6.03 44.92 0.27 0.68 16 9 H 0.12 1.84 7.90 -2.39 -0.02 1.83 16 10 N -0.67 -14.97 6.77 -495.58 -3.35 -18.33 16 11 C 0.12 2.71 5.66 85.56 0.48 3.19 16 12 C -0.16 -4.55 5.39 -19.84 -0.11 -4.66 16 13 C -0.05 -1.44 9.69 22.25 0.22 -1.23 16 14 C -0.22 -7.20 9.21 22.40 0.21 -6.99 16 15 C 0.21 8.45 6.55 38.22 0.25 8.70 16 16 N -0.63 -26.51 2.99 -726.55 -2.17 -28.69 16 17 C 0.10 3.27 10.19 127.77 1.30 4.57 16 18 C 0.23 11.02 3.98 85.63 0.34 11.36 16 19 C -0.54 -30.99 9.94 25.60 0.25 -30.73 16 20 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 21 C 0.01 0.61 5.47 84.65 0.46 1.07 16 22 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 23 Si 0.95 43.06 27.47 68.60 1.88 44.95 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 27 C -0.22 -8.72 9.21 22.40 0.21 -8.52 16 28 C -0.07 -2.25 9.69 22.25 0.22 -2.03 16 29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.83 6.40 -2.39 -0.02 0.81 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.84 7.88 -2.39 -0.02 0.82 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 39 H 0.11 1.45 8.03 -2.39 -0.02 1.43 16 40 H 0.34 8.22 8.51 -89.70 -0.76 7.46 16 41 H 0.04 0.85 8.08 -2.39 -0.02 0.83 16 42 H 0.09 1.69 8.08 -2.39 -0.02 1.67 16 43 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 44 H 0.13 3.82 6.15 -2.91 -0.02 3.80 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 47 H 0.07 2.20 6.20 -2.39 -0.01 2.18 16 48 H 0.04 1.63 7.13 -2.39 -0.02 1.62 16 49 H 0.03 1.39 5.63 -2.39 -0.01 1.38 16 50 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 51 H 0.10 4.52 6.15 -2.91 -0.02 4.50 16 52 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -66.68 410.66 2.49 -64.19 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.06 Total: 31.50 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 5.78 Total: -34.73 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -5.23 Total: -105.91 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.95 kcal Total: -66.68 2.49 -64.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839162915.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.832 kcal (2) G-P(sol) polarization free energy of solvation -66.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds