Wall clock time and date at job start Tue Mar 31 2020 11:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 C 1.50698 * 109.46907 * 240.00068 * 2 1 3 5 5 H 1.08009 * 119.99873 * 239.99967 * 4 2 1 6 6 C 1.37879 * 120.00054 * 60.00013 * 4 2 1 7 7 N 1.31504 * 120.00303 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99645 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47069 * 60.00160 * 8 6 4 10 10 H 1.48500 * 109.46785 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47146 * 299.99864 * 8 6 4 12 12 C 1.52997 * 109.47312 * 120.00120 * 2 1 3 13 13 N 1.46904 * 109.46950 * 300.00123 * 12 2 1 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 12 16 16 C 1.38286 * 119.92142 * 269.72559 * 15 14 13 17 17 C 1.38108 * 120.06868 * 179.72432 * 16 15 14 18 18 C 1.38904 * 119.92733 * 0.54850 * 17 16 15 19 19 N 1.39681 * 120.07777 * 179.70234 * 18 17 16 20 20 C 1.46844 * 111.00055 * 124.23116 * 19 18 17 21 21 C 1.53028 * 109.52387 * 174.16215 * 20 19 18 22 22 C 1.53122 * 109.27975 * 59.18060 * 21 20 19 23 23 C 1.53120 * 109.16016 * 302.34589 * 22 21 20 24 24 C 1.46849 * 110.99406 * 0.02562 * 19 18 17 25 25 C 1.38913 * 119.85166 * 359.72744 * 18 17 16 26 26 C 1.38106 * 119.92415 * 359.97438 * 25 18 17 27 27 H 1.09002 * 109.47029 * 300.00286 * 1 2 3 28 28 H 1.09000 * 109.47152 * 60.00059 * 1 2 3 29 29 H 1.08993 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46874 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47103 * 299.99971 * 3 2 1 32 32 H 1.09002 * 109.47446 * 59.99970 * 3 2 1 33 33 H 0.96998 * 120.00316 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47319 * 180.02562 * 12 2 1 35 35 H 1.09003 * 109.47435 * 59.99376 * 12 2 1 36 36 H 1.00902 * 111.00190 * 56.03777 * 13 12 2 37 37 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 38 38 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 39 39 H 1.07999 * 119.96544 * 359.97438 * 16 15 14 40 40 H 1.08005 * 120.03586 * 180.27157 * 17 16 15 41 41 H 1.09001 * 109.46105 * 294.18149 * 20 19 18 42 42 H 1.08999 * 109.46239 * 54.14578 * 20 19 18 43 43 H 1.08995 * 109.50756 * 299.24102 * 21 20 19 44 44 H 1.09001 * 109.50816 * 179.11692 * 21 20 19 45 45 H 1.08999 * 109.52896 * 182.44190 * 22 21 20 46 46 H 1.09000 * 109.52188 * 62.24834 * 22 21 20 47 47 H 1.09006 * 109.49983 * 297.71405 * 23 22 21 48 48 H 1.08999 * 109.50685 * 177.59084 * 23 22 21 49 49 H 1.08996 * 109.46286 * 305.84955 * 24 19 18 50 50 H 1.08994 * 109.46629 * 65.82422 * 24 19 18 51 51 H 1.08000 * 120.03949 * 180.02562 * 25 18 17 52 52 H 1.07999 * 119.96140 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.8256 -2.5202 -4.0077 10 1 1.8269 -0.4200 -5.2205 11 1 3.8063 -1.1211 -4.0082 12 6 2.0400 -0.7213 1.2492 13 7 1.5503 -0.0288 2.4487 14 6 2.0219 -0.6945 3.6703 15 6 1.5012 0.0428 4.8771 16 6 2.2442 1.0685 5.4323 17 6 1.7673 1.7500 6.5348 18 6 0.5454 1.3966 7.0929 19 7 0.0630 2.0797 8.2118 20 6 -1.2727 2.6331 7.9550 21 6 -1.8285 3.2458 9.2424 22 6 -0.8831 4.3487 9.7266 23 6 0.5126 3.7563 9.9401 24 6 1.0006 3.1287 8.6323 25 6 -0.1957 0.3620 6.5361 26 6 0.2841 -0.3113 5.4298 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7081 1.1608 -3.4844 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7489 1.2493 36 1 0.5438 0.0414 2.4401 37 1 1.6588 -1.7221 3.6873 38 1 3.1118 -0.6939 3.6869 39 1 3.1964 1.3396 5.0009 40 1 2.3460 2.5540 6.9654 41 1 -1.2053 3.4027 7.1861 42 1 -1.9362 1.8378 7.6154 43 1 -1.9091 2.4739 10.0077 44 1 -2.8134 3.6704 9.0478 45 1 -1.2525 4.7585 10.6667 46 1 -0.8325 5.1396 8.9783 47 1 0.4688 2.9922 10.7163 48 1 1.2004 4.5455 10.2438 49 1 1.9881 2.6934 8.7848 50 1 1.0573 3.8960 7.8603 51 1 -1.1463 0.0849 6.9673 52 1 -0.2913 -1.1161 4.9967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839163353.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:50 Heat of formation + Delta-G solvation = 18.212151 kcal Electronic energy + Delta-G solvation = -26296.426042 eV Core-core repulsion = 22873.847817 eV Total energy + Delta-G solvation = -3422.578225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.47975 -38.32251 -36.75889 -34.62855 -33.24354 -31.78499 -31.08919 -30.47928 -29.11809 -25.76551 -25.53258 -25.16528 -24.21995 -23.98918 -22.67907 -21.78288 -20.81879 -19.85586 -18.42437 -17.65715 -16.07744 -15.81306 -15.43228 -15.23222 -15.07613 -14.58730 -14.42937 -14.27804 -14.19048 -13.92440 -13.61933 -13.46833 -13.31272 -12.84415 -12.61517 -12.42227 -12.21259 -12.01370 -11.81023 -11.60532 -11.21384 -11.16968 -11.08297 -11.01304 -10.93594 -10.78856 -10.65302 -10.59647 -10.54163 -10.14693 -10.04071 -9.66237 -9.35564 -9.05404 -8.86335 -8.60629 -8.26778 -7.84145 -7.60894 -5.88866 -3.99316 1.40179 1.49246 3.34002 3.38717 3.41294 3.46110 3.86744 4.41069 4.45994 4.47036 4.57422 4.80433 4.90851 4.96177 4.98061 5.02596 5.14810 5.22529 5.25486 5.31110 5.36330 5.40928 5.47303 5.49726 5.54394 5.58762 5.71641 5.73716 5.78504 5.83247 5.97411 6.01312 6.12124 6.25447 6.34585 6.40553 6.43917 6.74781 6.77250 6.81830 6.90224 6.92005 7.10844 7.19661 7.26824 7.41677 7.50208 7.76085 7.78336 7.85866 8.01272 8.23955 8.37299 8.58356 9.01977 9.65416 11.11588 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028505 B = 0.002183 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.057511 B =12822.121926 C =13049.993062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 C -0.119 4.119 4 C -0.506 4.506 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.074 3.926 13 N -0.681 5.681 14 C 0.097 3.903 15 C -0.094 4.094 16 C -0.072 4.072 17 C -0.172 4.172 18 C 0.102 3.898 19 N -0.488 5.488 20 C 0.057 3.943 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.118 4.118 24 C 0.050 3.950 25 C -0.140 4.140 26 C -0.091 4.091 27 H 0.011 0.989 28 H 0.083 0.917 29 H 0.018 0.982 30 H 0.017 0.983 31 H 0.073 0.927 32 H 0.020 0.980 33 H 0.258 0.742 34 H 0.056 0.944 35 H 0.013 0.987 36 H 0.338 0.662 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.045 0.955 51 H 0.120 0.880 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 4.734 24.602 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.068 3.932 3 C -0.177 4.177 4 C -0.545 4.545 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.054 4.054 13 N -0.313 5.313 14 C -0.032 4.032 15 C -0.096 4.096 16 C -0.091 4.091 17 C -0.192 4.192 18 C 0.005 3.995 19 N -0.204 5.204 20 C -0.069 4.069 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.077 4.077 25 C -0.161 4.161 26 C -0.110 4.110 27 H 0.029 0.971 28 H 0.102 0.898 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.092 0.908 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.157 0.843 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.063 0.937 51 H 0.138 0.862 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.967 5.021 24.882 25.557 hybrid contribution -0.092 -0.853 -1.458 1.692 sum -3.059 4.168 23.424 23.988 Atomic orbital electron populations 1.21834 0.98560 0.98338 1.00282 1.18085 0.92089 0.93059 0.89928 1.21636 0.97746 0.98219 1.00059 1.21075 1.31156 1.11789 0.90489 0.93064 1.24889 0.95087 0.94962 0.98679 1.69821 1.36790 1.22779 1.22983 0.86720 0.79177 0.79745 0.82653 1.20486 1.21385 1.20412 1.22180 0.98955 0.94400 0.89847 1.60658 1.16431 1.53537 1.00667 1.20859 1.00072 0.94108 0.88193 1.19849 0.94997 0.97694 0.97027 1.20898 0.99597 0.94234 0.94352 1.21250 0.97745 1.02093 0.98153 1.18864 0.94985 0.95737 0.89881 1.59081 1.03682 1.26498 1.31159 1.22235 0.88780 0.98714 0.97135 1.21627 0.98437 0.98266 0.97319 1.21608 0.95359 0.97846 1.01321 1.21622 0.96669 1.00033 0.97274 1.22264 0.96035 0.92527 0.96860 1.20667 1.00623 0.96926 0.97856 1.20925 0.95379 0.99297 0.95405 0.97057 0.89838 0.96239 0.96336 0.90785 0.96112 0.93156 0.92541 0.96888 0.84317 0.95288 0.90841 0.85902 0.85932 0.93868 0.90030 0.90999 0.91168 0.91650 0.92067 0.91030 0.91226 0.90002 0.93681 0.86174 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 7.92 37.16 0.29 -2.87 16 2 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 3 C -0.12 -2.95 8.09 37.16 0.30 -2.64 16 4 C -0.51 -13.73 8.01 -34.44 -0.28 -14.01 16 5 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 6 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -24.70 9.35 55.43 0.52 -24.18 16 8 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.07 1.57 4.59 -3.82 -0.02 1.55 16 13 N -0.68 -12.43 5.70 -115.05 -0.66 -13.09 16 14 C 0.10 1.47 5.81 -4.98 -0.03 1.44 16 15 C -0.09 -1.32 5.40 -104.59 -0.56 -1.88 16 16 C -0.07 -0.95 9.69 -39.61 -0.38 -1.34 16 17 C -0.17 -2.08 8.82 -39.38 -0.35 -2.43 16 18 C 0.10 1.22 5.64 -83.79 -0.47 0.75 16 19 N -0.49 -4.97 4.70 -171.15 -0.80 -5.78 16 20 C 0.06 0.51 5.26 -3.84 -0.02 0.49 16 21 C -0.12 -0.83 6.09 -26.65 -0.16 -1.00 16 22 C -0.12 -0.81 6.00 -26.61 -0.16 -0.97 16 23 C -0.12 -0.81 6.09 -26.65 -0.16 -0.98 16 24 C 0.05 0.43 4.15 -3.83 -0.02 0.42 16 25 C -0.14 -1.69 9.16 -39.38 -0.36 -2.05 16 26 C -0.09 -1.17 9.69 -39.61 -0.38 -1.55 16 27 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 28 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 2.00 6.07 -51.93 -0.32 1.69 16 32 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.34 6.20 6.76 -39.29 -0.27 5.94 16 37 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 38 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 39 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.12 1.27 5.81 -52.48 -0.30 0.96 16 41 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.72 6.70 -51.93 -0.35 0.37 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.69 6.98 -51.93 -0.36 0.33 16 50 H 0.04 0.40 7.74 -51.93 -0.40 0.00 16 51 H 0.12 1.26 7.15 -52.49 -0.38 0.88 16 52 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -28.13 392.09 -12.30 -40.42 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -9.30 Total: 4.28 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -2.94 Total: -23.79 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.94 Total: -43.05 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.13 -12.30 -40.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839163353.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.635 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds