Wall clock time and date at job start Tue Mar 31 2020 11:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 C 1.50698 * 109.46907 * 240.00068 * 2 1 3 5 5 H 1.08009 * 119.99873 * 239.99967 * 4 2 1 6 6 C 1.37879 * 120.00054 * 60.00013 * 4 2 1 7 7 N 1.31504 * 120.00303 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99645 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47069 * 60.00160 * 8 6 4 10 10 H 1.48500 * 109.46785 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47146 * 299.99864 * 8 6 4 12 12 C 1.52997 * 109.47312 * 120.00120 * 2 1 3 13 13 N 1.46904 * 109.46950 * 300.00123 * 12 2 1 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 12 16 16 C 1.38286 * 119.92142 * 269.72559 * 15 14 13 17 17 C 1.38108 * 120.06868 * 179.72432 * 16 15 14 18 18 C 1.38904 * 119.92733 * 0.54850 * 17 16 15 19 19 N 1.39681 * 120.07777 * 179.70234 * 18 17 16 20 20 C 1.46844 * 111.00055 * 124.23116 * 19 18 17 21 21 C 1.53028 * 109.52387 * 174.16215 * 20 19 18 22 22 C 1.53122 * 109.27975 * 59.18060 * 21 20 19 23 23 C 1.53120 * 109.16016 * 302.34589 * 22 21 20 24 24 C 1.46849 * 110.99406 * 0.02562 * 19 18 17 25 25 C 1.38913 * 119.85166 * 359.72744 * 18 17 16 26 26 C 1.38106 * 119.92415 * 359.97438 * 25 18 17 27 27 H 1.09002 * 109.47029 * 300.00286 * 1 2 3 28 28 H 1.09000 * 109.47152 * 60.00059 * 1 2 3 29 29 H 1.08993 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46874 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47103 * 299.99971 * 3 2 1 32 32 H 1.09002 * 109.47446 * 59.99970 * 3 2 1 33 33 H 0.96998 * 120.00316 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47319 * 180.02562 * 12 2 1 35 35 H 1.09003 * 109.47435 * 59.99376 * 12 2 1 36 36 H 1.00902 * 111.00190 * 56.03777 * 13 12 2 37 37 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 38 38 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 39 39 H 1.07999 * 119.96544 * 359.97438 * 16 15 14 40 40 H 1.08005 * 120.03586 * 180.27157 * 17 16 15 41 41 H 1.09001 * 109.46105 * 294.18149 * 20 19 18 42 42 H 1.08999 * 109.46239 * 54.14578 * 20 19 18 43 43 H 1.08995 * 109.50756 * 299.24102 * 21 20 19 44 44 H 1.09001 * 109.50816 * 179.11692 * 21 20 19 45 45 H 1.08999 * 109.52896 * 182.44190 * 22 21 20 46 46 H 1.09000 * 109.52188 * 62.24834 * 22 21 20 47 47 H 1.09006 * 109.49983 * 297.71405 * 23 22 21 48 48 H 1.08999 * 109.50685 * 177.59084 * 23 22 21 49 49 H 1.08996 * 109.46286 * 305.84955 * 24 19 18 50 50 H 1.08994 * 109.46629 * 65.82422 * 24 19 18 51 51 H 1.08000 * 120.03949 * 180.02562 * 25 18 17 52 52 H 1.07999 * 119.96140 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.8256 -2.5202 -4.0077 10 1 1.8269 -0.4200 -5.2205 11 1 3.8063 -1.1211 -4.0082 12 6 2.0400 -0.7213 1.2492 13 7 1.5503 -0.0288 2.4487 14 6 2.0219 -0.6945 3.6703 15 6 1.5012 0.0428 4.8771 16 6 2.2442 1.0685 5.4323 17 6 1.7673 1.7500 6.5348 18 6 0.5454 1.3966 7.0929 19 7 0.0630 2.0797 8.2118 20 6 -1.2727 2.6331 7.9550 21 6 -1.8285 3.2458 9.2424 22 6 -0.8831 4.3487 9.7266 23 6 0.5126 3.7563 9.9401 24 6 1.0006 3.1287 8.6323 25 6 -0.1957 0.3620 6.5361 26 6 0.2841 -0.3113 5.4298 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7081 1.1608 -3.4844 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7489 1.2493 36 1 0.5438 0.0414 2.4401 37 1 1.6588 -1.7221 3.6873 38 1 3.1118 -0.6939 3.6869 39 1 3.1964 1.3396 5.0009 40 1 2.3460 2.5540 6.9654 41 1 -1.2053 3.4027 7.1861 42 1 -1.9362 1.8378 7.6154 43 1 -1.9091 2.4739 10.0077 44 1 -2.8134 3.6704 9.0478 45 1 -1.2525 4.7585 10.6667 46 1 -0.8325 5.1396 8.9783 47 1 0.4688 2.9922 10.7163 48 1 1.2004 4.5455 10.2438 49 1 1.9881 2.6934 8.7848 50 1 1.0573 3.8960 7.8603 51 1 -1.1463 0.0849 6.9673 52 1 -0.2913 -1.1161 4.9967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839163353.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:49 Heat of formation + Delta-G solvation = 4.826175 kcal Electronic energy + Delta-G solvation = -26297.006501 eV Core-core repulsion = 22873.847817 eV Total energy + Delta-G solvation = -3423.158685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30936 -39.30292 -38.34896 -35.88428 -34.45599 -32.84184 -32.54773 -31.29399 -30.30102 -27.50624 -27.25344 -26.87038 -25.27486 -24.83604 -23.97661 -22.61945 -21.71287 -20.55812 -20.31786 -18.51195 -17.89463 -17.12669 -16.68475 -16.25874 -16.10278 -15.89654 -15.57439 -15.32133 -15.00301 -14.91128 -14.85173 -14.42241 -14.29195 -14.17566 -14.04419 -13.81496 -13.34622 -13.30749 -13.03213 -12.98125 -12.77150 -12.61501 -12.49145 -12.24255 -12.12184 -12.10338 -12.02598 -11.91536 -11.69557 -11.38285 -11.31317 -11.27443 -10.94674 -10.60744 -10.50639 -10.33557 -9.82751 -9.16788 -8.67731 -7.95704 -6.12774 0.42243 0.52531 1.44070 1.44626 1.51596 2.46852 2.63056 2.94447 3.26081 3.64246 3.78541 3.84209 3.97796 4.01940 4.04622 4.09618 4.21139 4.36586 4.41672 4.50722 4.52605 4.56399 4.60809 4.62572 4.68186 4.77259 4.79014 4.86016 4.88102 4.91292 4.94995 5.03703 5.10728 5.16972 5.18091 5.21596 5.24572 5.29050 5.38023 5.42487 5.43642 5.45874 5.54086 5.70419 5.76921 5.79786 5.85821 6.09581 6.17385 6.25374 6.34161 6.38490 6.49813 6.64097 6.96551 7.54585 9.02286 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028505 B = 0.002183 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.057511 B =12822.121926 C =13049.993062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.059 3.941 3 C -0.105 4.105 4 C -0.526 4.526 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.904 5.904 8 Si 0.945 3.055 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.089 3.911 13 N -0.683 5.683 14 C 0.102 3.898 15 C -0.111 4.111 16 C -0.081 4.081 17 C -0.177 4.177 18 C 0.102 3.898 19 N -0.492 5.492 20 C 0.055 3.945 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.114 4.114 24 C 0.047 3.953 25 C -0.146 4.146 26 C -0.095 4.095 27 H 0.031 0.969 28 H 0.056 0.944 29 H 0.017 0.983 30 H 0.010 0.990 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.257 0.743 34 H 0.050 0.950 35 H 0.011 0.989 36 H 0.338 0.662 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.034 0.966 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.041 0.959 51 H 0.135 0.865 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.639 4.873 26.260 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.059 3.941 3 C -0.163 4.163 4 C -0.565 4.565 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C -0.040 4.040 13 N -0.315 5.315 14 C -0.027 4.027 15 C -0.112 4.112 16 C -0.101 4.101 17 C -0.198 4.198 18 C 0.004 3.996 19 N -0.208 5.208 20 C -0.071 4.071 21 C -0.153 4.153 22 C -0.161 4.161 23 C -0.152 4.152 24 C -0.080 4.080 25 C -0.166 4.166 26 C -0.114 4.114 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.157 0.843 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.100 0.900 50 H 0.060 0.940 51 H 0.153 0.847 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.292 5.162 26.561 27.258 hybrid contribution -0.009 -0.857 -1.878 2.064 sum -3.301 4.305 24.683 25.272 Atomic orbital electron populations 1.21663 0.98229 0.98082 0.99895 1.18144 0.92387 0.92838 0.90764 1.21467 0.97074 0.98488 0.99256 1.21403 1.31259 1.11908 0.91882 0.93615 1.25557 0.95378 0.95668 1.01227 1.69958 1.37386 1.23631 1.23328 0.85819 0.78642 0.78797 0.79540 1.20052 1.21142 1.20133 1.21849 0.98401 0.93968 0.89796 1.60583 1.16354 1.53718 1.00804 1.20831 1.00100 0.94403 0.87323 1.19760 0.95879 0.98521 0.97074 1.21013 0.99781 0.94356 0.94900 1.21431 0.98116 1.02350 0.97882 1.19089 0.94850 0.95672 0.90015 1.59126 1.04471 1.27086 1.30075 1.22302 0.88198 0.98511 0.98038 1.21620 0.99082 0.98366 0.96185 1.21623 0.94989 0.97552 1.01938 1.21616 0.97257 1.00273 0.96070 1.22352 0.95902 0.92092 0.97662 1.20858 1.01239 0.96830 0.97667 1.21064 0.95079 0.99592 0.95647 0.95001 0.92550 0.96334 0.97044 0.93310 0.94965 0.93333 0.93153 0.97122 0.84340 0.94629 0.90774 0.85780 0.84463 0.94769 0.90017 0.91048 0.89938 0.90272 0.92252 0.91247 0.89803 0.89986 0.94027 0.84735 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 7.92 71.98 0.57 -5.19 16 2 C 0.06 2.90 0.57 -52.93 -0.03 2.87 16 3 C -0.10 -5.22 8.09 71.98 0.58 -4.64 16 4 C -0.53 -28.61 8.01 25.60 0.21 -28.40 16 5 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 6 C 0.02 1.13 5.15 84.66 0.44 1.57 16 7 N -0.90 -50.94 9.35 21.45 0.20 -50.74 16 8 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 C 0.09 3.71 4.59 86.30 0.40 4.10 16 13 N -0.68 -24.33 5.70 -517.92 -2.95 -27.28 16 14 C 0.10 3.01 5.81 85.56 0.50 3.51 16 15 C -0.11 -3.00 5.40 -19.84 -0.11 -3.11 16 16 C -0.08 -2.10 9.69 22.25 0.22 -1.88 16 17 C -0.18 -4.10 8.82 22.40 0.20 -3.90 16 18 C 0.10 2.29 5.64 38.21 0.22 2.51 16 19 N -0.49 -9.28 4.70 -695.41 -3.27 -12.55 16 20 C 0.05 0.90 5.26 86.32 0.45 1.35 16 21 C -0.11 -1.38 6.09 30.64 0.19 -1.19 16 22 C -0.12 -1.33 6.00 30.67 0.18 -1.15 16 23 C -0.11 -1.34 6.09 30.65 0.19 -1.15 16 24 C 0.05 0.73 4.15 86.33 0.36 1.09 16 25 C -0.15 -3.31 9.16 22.40 0.21 -3.10 16 26 C -0.09 -2.33 9.69 22.25 0.22 -2.11 16 27 H 0.03 1.34 6.57 -2.39 -0.02 1.32 16 28 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.05 2.66 6.07 -2.39 -0.01 2.65 16 32 H 0.03 1.47 7.60 -2.39 -0.02 1.46 16 33 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 34 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 35 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.34 12.01 6.76 -89.69 -0.61 11.40 16 37 H 0.04 1.01 8.08 -2.39 -0.02 0.99 16 38 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 39 H 0.12 3.08 8.06 -2.91 -0.02 3.05 16 40 H 0.14 2.67 5.81 -2.91 -0.02 2.65 16 41 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.08 1.31 6.70 -2.39 -0.02 1.30 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 48 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.08 1.27 6.98 -2.39 -0.02 1.25 16 50 H 0.04 0.69 7.74 -2.39 -0.02 0.67 16 51 H 0.13 2.59 7.15 -2.91 -0.02 2.57 16 52 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -58.92 392.09 1.24 -57.68 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.27 Total: 26.10 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 4.97 Total: -38.84 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -6.02 Total: -90.57 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -58.92 1.24 -57.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839163353.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.504 kcal (2) G-P(sol) polarization free energy of solvation -58.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds