Wall clock time and date at job start Tue Mar 31 2020 11:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99464 * 2 1 3 5 5 H 1.07995 * 120.00107 * 240.00273 * 4 2 1 6 6 C 1.37878 * 119.99714 * 60.00009 * 4 2 1 7 7 N 1.31510 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47051 * 60.00574 * 8 6 4 10 10 H 1.48501 * 109.46677 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47226 * 299.99990 * 8 6 4 12 12 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 13 13 N 1.46901 * 109.46916 * 299.99733 * 12 2 1 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.38129 * 120.04015 * 259.99928 * 15 14 13 17 17 C 1.38265 * 120.07238 * 179.97438 * 16 15 14 18 18 C 1.38298 * 120.15151 * 0.02562 * 17 16 15 19 19 C 1.38079 * 120.08124 * 359.97196 * 18 17 16 20 20 C 1.38892 * 120.03724 * 79.72339 * 15 14 13 21 21 N 1.39674 * 120.07483 * 0.02562 * 20 15 14 22 22 C 1.46849 * 110.99976 * 244.20909 * 21 20 15 23 23 C 1.53039 * 109.52387 * 174.15657 * 22 21 20 24 24 C 1.53124 * 109.27401 * 59.18116 * 23 22 21 25 25 C 1.53118 * 109.16003 * 302.34189 * 24 23 22 26 26 C 1.46848 * 111.00484 * 119.99771 * 21 20 15 27 27 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 28 28 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 29 29 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 32 32 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 33 33 H 0.97007 * 120.00038 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46889 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.47384 * 59.99754 * 12 2 1 36 36 H 1.00901 * 111.00067 * 303.95263 * 13 12 2 37 37 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 38 38 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 39 39 H 1.07999 * 119.95608 * 359.97438 * 16 15 14 40 40 H 1.08002 * 119.91911 * 179.97438 * 17 16 15 41 41 H 1.08008 * 119.96307 * 180.02562 * 18 17 16 42 42 H 1.07992 * 120.04201 * 180.02562 * 19 18 17 43 43 H 1.08996 * 109.46218 * 294.17549 * 22 21 20 44 44 H 1.09000 * 109.45995 * 54.14336 * 22 21 20 45 45 H 1.08998 * 109.50727 * 299.23926 * 23 22 21 46 46 H 1.08992 * 109.53642 * 179.13607 * 23 22 21 47 47 H 1.09008 * 109.51820 * 182.43929 * 24 23 22 48 48 H 1.08997 * 109.58024 * 62.28074 * 24 23 22 49 49 H 1.09003 * 109.50739 * 297.71382 * 25 24 23 50 50 H 1.09000 * 109.53649 * 177.62057 * 25 24 23 51 51 H 1.09007 * 109.45869 * 305.85629 * 26 21 20 52 52 H 1.08994 * 109.46215 * 65.82948 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8280 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2203 11 1 3.8075 -1.1192 -4.0076 12 6 2.0399 -0.7213 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6944 3.6704 15 6 1.5001 0.0422 4.8771 16 6 2.3179 0.9251 5.5552 17 6 1.8399 1.6017 6.6622 18 6 0.5423 1.3969 7.0946 19 6 -0.2806 0.5159 6.4215 20 6 0.1947 -0.1614 5.3054 21 7 -0.6366 -1.0495 4.6190 22 6 -1.7746 -0.3449 4.0148 23 6 -2.5806 -1.3196 3.1532 24 6 -3.0772 -2.4749 4.0270 25 6 -1.8759 -3.1615 4.6826 26 6 -1.0903 -2.1334 5.4997 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 0.7095 1.1616 -3.4845 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2494 36 1 1.8198 0.9437 2.4401 37 1 1.6586 -1.7220 3.6874 38 1 3.1116 -0.6939 3.6870 39 1 3.3318 1.0869 5.2203 40 1 2.4815 2.2911 7.1907 41 1 0.1719 1.9274 7.9594 42 1 -1.2939 0.3568 6.7595 43 1 -2.4124 0.0570 4.8020 44 1 -1.4074 0.4714 3.3928 45 1 -1.9472 -1.7115 2.3574 46 1 -3.4340 -0.8006 2.7169 47 1 -3.6152 -3.1938 3.4090 48 1 -3.7424 -2.0889 4.7994 49 1 -1.2313 -3.5824 3.9109 50 1 -2.2251 -3.9583 5.3393 51 1 -0.2261 -2.6161 5.9563 52 1 -1.7314 -1.7232 6.2799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839164072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:52 Heat of formation + Delta-G solvation = 20.807386 kcal Electronic energy + Delta-G solvation = -27968.536098 eV Core-core repulsion = 24546.070410 eV Total energy + Delta-G solvation = -3422.465687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.23183 -37.89910 -36.71632 -34.09712 -33.55700 -31.57998 -30.72453 -30.03451 -29.00630 -25.54214 -25.46570 -25.08197 -24.29841 -22.97736 -22.90047 -21.85977 -20.62715 -19.46132 -18.34685 -17.16447 -16.02915 -15.64580 -15.51273 -14.93201 -14.88147 -14.53272 -14.26787 -14.16689 -13.87866 -13.49028 -13.34502 -13.29945 -12.98601 -12.60211 -12.43669 -12.18977 -12.10195 -11.90938 -11.81423 -11.26529 -11.12186 -11.07630 -10.97691 -10.87942 -10.63450 -10.58323 -10.49489 -10.37028 -10.23811 -10.08849 -9.98328 -9.28775 -9.03214 -8.77788 -8.55252 -8.45883 -8.22659 -8.22086 -7.48595 -5.84870 -3.94788 1.36864 1.43095 3.36330 3.40917 3.43807 3.76334 3.92434 4.49501 4.83940 4.90779 4.93880 4.95512 5.01793 5.02926 5.28320 5.32866 5.37524 5.40429 5.45764 5.50646 5.56695 5.66645 5.72385 5.77549 5.87479 5.93860 5.98284 6.02299 6.06469 6.25182 6.27593 6.33926 6.41988 6.48594 6.49873 6.53602 6.59116 6.73753 6.82290 6.94974 6.98565 7.16501 7.18671 7.26884 7.49645 7.56966 7.62643 7.83300 7.85787 7.94927 8.13233 8.30569 8.43821 8.64075 9.06755 9.69716 11.15358 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013955 B = 0.003936 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.029402 B = 7112.792621 C = 8348.414646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.071 3.929 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.050 0.950 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.280 1.280 12 C 0.079 3.921 13 N -0.668 5.668 14 C 0.109 3.891 15 C -0.052 4.052 16 C -0.113 4.113 17 C -0.126 4.126 18 C -0.118 4.118 19 C -0.155 4.155 20 C 0.115 3.885 21 N -0.485 5.485 22 C 0.073 3.927 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.116 4.116 26 C 0.061 3.939 27 H 0.020 0.980 28 H 0.070 0.930 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.081 0.919 32 H 0.010 0.990 33 H 0.257 0.743 34 H 0.008 0.992 35 H 0.056 0.944 36 H 0.332 0.668 37 H 0.082 0.918 38 H 0.019 0.981 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.023 0.977 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.070 0.930 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 -1.771 19.025 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 C -0.189 4.189 4 C -0.543 4.543 5 H 0.068 0.932 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.206 1.206 12 C -0.049 4.049 13 N -0.299 5.299 14 C -0.021 4.021 15 C -0.053 4.053 16 C -0.132 4.132 17 C -0.144 4.144 18 C -0.137 4.137 19 C -0.175 4.175 20 C 0.021 3.979 21 N -0.206 5.206 22 C -0.053 4.053 23 C -0.154 4.154 24 C -0.157 4.157 25 C -0.153 4.153 26 C -0.066 4.066 27 H 0.039 0.961 28 H 0.089 0.911 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.100 0.900 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.150 0.850 37 H 0.100 0.900 38 H 0.037 0.963 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.042 0.958 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.088 0.912 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.704 -2.226 18.456 19.176 hybrid contribution 0.860 0.188 -0.138 0.891 sum -3.845 -2.038 18.318 18.828 Atomic orbital electron populations 1.21577 0.97299 0.98403 0.99803 1.18062 0.93251 0.91764 0.89907 1.21822 0.97553 0.99356 1.00154 1.21090 1.30940 1.11750 0.90570 0.93188 1.24866 0.95089 0.94974 0.98570 1.69830 1.36898 1.22804 1.22852 0.86758 0.79080 0.79872 0.82808 1.20442 1.21436 1.20552 1.22114 0.95065 0.97890 0.89842 1.60562 1.63309 1.05699 1.00348 1.20694 0.95004 0.98587 0.87774 1.19914 0.92515 0.96507 0.96407 1.21073 0.99787 0.96499 0.95808 1.21065 0.95876 1.00186 0.97315 1.20924 0.94194 0.98638 0.99903 1.21638 0.99830 0.98683 0.97352 1.18576 0.92838 0.94248 0.92284 1.59382 1.18660 1.10469 1.32129 1.22028 0.89806 0.96613 0.96843 1.21574 0.99256 0.96010 0.98586 1.21575 0.97169 0.98057 0.98939 1.21570 0.97050 0.97027 0.99685 1.22117 0.98333 0.92544 0.93582 0.96088 0.91124 0.96433 0.96417 0.89986 0.97108 0.93256 0.97401 0.92589 0.85007 0.89951 0.96258 0.86107 0.86398 0.86636 0.86802 0.95841 0.89633 0.89993 0.91734 0.91992 0.92872 0.90729 0.91987 0.91150 0.95243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 8.09 37.16 0.30 -2.44 16 2 C 0.07 1.71 0.57 -155.66 -0.09 1.62 16 3 C -0.13 -3.12 7.92 37.16 0.29 -2.83 16 4 C -0.50 -13.65 8.01 -34.44 -0.28 -13.93 16 5 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.62 9.35 55.43 0.52 -24.10 16 8 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.08 1.67 4.59 -3.82 -0.02 1.65 16 13 N -0.67 -12.02 5.70 -115.05 -0.66 -12.68 16 14 C 0.11 1.69 5.44 -4.97 -0.03 1.67 16 15 C -0.05 -0.73 5.41 -104.42 -0.56 -1.30 16 16 C -0.11 -1.41 9.66 -39.61 -0.38 -1.79 16 17 C -0.13 -1.41 10.04 -39.55 -0.40 -1.80 16 18 C -0.12 -1.30 10.04 -39.62 -0.40 -1.69 16 19 C -0.15 -1.87 8.70 -39.38 -0.34 -2.22 16 20 C 0.11 1.57 4.66 -83.78 -0.39 1.18 16 21 N -0.49 -6.53 3.77 -171.15 -0.65 -7.17 16 22 C 0.07 0.99 5.17 -3.83 -0.02 0.97 16 23 C -0.12 -1.49 6.09 -26.65 -0.16 -1.66 16 24 C -0.12 -1.29 6.00 -26.61 -0.16 -1.45 16 25 C -0.12 -1.24 6.09 -26.65 -0.16 -1.40 16 26 C 0.06 0.70 5.11 -3.84 -0.02 0.68 16 27 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 28 H 0.07 1.89 6.07 -51.93 -0.32 1.57 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 32 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.33 6.09 6.76 -39.29 -0.27 5.82 16 37 H 0.08 1.35 7.80 -51.93 -0.41 0.95 16 38 H 0.02 0.29 8.00 -51.93 -0.42 -0.12 16 39 H 0.12 1.37 8.04 -52.49 -0.42 0.94 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.11 1.25 7.13 -52.49 -0.37 0.88 16 43 H 0.02 0.29 7.57 -51.93 -0.39 -0.10 16 44 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.07 0.81 8.11 -51.92 -0.42 0.39 16 52 H 0.03 0.32 7.32 -51.93 -0.38 -0.06 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -27.21 395.18 -12.23 -39.45 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -9.48 Total: 5.35 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -2.91 Total: -23.05 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.78 Total: -43.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -27.21 -12.23 -39.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839164072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.255 kcal (2) G-P(sol) polarization free energy of solvation -27.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds