Wall clock time and date at job start Tue Mar 31 2020 11:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99464 * 2 1 3 5 5 H 1.07995 * 120.00107 * 240.00273 * 4 2 1 6 6 C 1.37878 * 119.99714 * 60.00009 * 4 2 1 7 7 N 1.31510 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47051 * 60.00574 * 8 6 4 10 10 H 1.48501 * 109.46677 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47226 * 299.99990 * 8 6 4 12 12 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 13 13 N 1.46901 * 109.46916 * 299.99733 * 12 2 1 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.38129 * 120.04015 * 259.99928 * 15 14 13 17 17 C 1.38265 * 120.07238 * 179.97438 * 16 15 14 18 18 C 1.38298 * 120.15151 * 0.02562 * 17 16 15 19 19 C 1.38079 * 120.08124 * 359.97196 * 18 17 16 20 20 C 1.38892 * 120.03724 * 79.72339 * 15 14 13 21 21 N 1.39674 * 120.07483 * 0.02562 * 20 15 14 22 22 C 1.46849 * 110.99976 * 244.20909 * 21 20 15 23 23 C 1.53039 * 109.52387 * 174.15657 * 22 21 20 24 24 C 1.53124 * 109.27401 * 59.18116 * 23 22 21 25 25 C 1.53118 * 109.16003 * 302.34189 * 24 23 22 26 26 C 1.46848 * 111.00484 * 119.99771 * 21 20 15 27 27 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 28 28 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 29 29 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 32 32 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 33 33 H 0.97007 * 120.00038 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46889 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.47384 * 59.99754 * 12 2 1 36 36 H 1.00901 * 111.00067 * 303.95263 * 13 12 2 37 37 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 38 38 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 39 39 H 1.07999 * 119.95608 * 359.97438 * 16 15 14 40 40 H 1.08002 * 119.91911 * 179.97438 * 17 16 15 41 41 H 1.08008 * 119.96307 * 180.02562 * 18 17 16 42 42 H 1.07992 * 120.04201 * 180.02562 * 19 18 17 43 43 H 1.08996 * 109.46218 * 294.17549 * 22 21 20 44 44 H 1.09000 * 109.45995 * 54.14336 * 22 21 20 45 45 H 1.08998 * 109.50727 * 299.23926 * 23 22 21 46 46 H 1.08992 * 109.53642 * 179.13607 * 23 22 21 47 47 H 1.09008 * 109.51820 * 182.43929 * 24 23 22 48 48 H 1.08997 * 109.58024 * 62.28074 * 24 23 22 49 49 H 1.09003 * 109.50739 * 297.71382 * 25 24 23 50 50 H 1.09000 * 109.53649 * 177.62057 * 25 24 23 51 51 H 1.09007 * 109.45869 * 305.85629 * 26 21 20 52 52 H 1.08994 * 109.46215 * 65.82948 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8280 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2203 11 1 3.8075 -1.1192 -4.0076 12 6 2.0399 -0.7213 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6944 3.6704 15 6 1.5001 0.0422 4.8771 16 6 2.3179 0.9251 5.5552 17 6 1.8399 1.6017 6.6622 18 6 0.5423 1.3969 7.0946 19 6 -0.2806 0.5159 6.4215 20 6 0.1947 -0.1614 5.3054 21 7 -0.6366 -1.0495 4.6190 22 6 -1.7746 -0.3449 4.0148 23 6 -2.5806 -1.3196 3.1532 24 6 -3.0772 -2.4749 4.0270 25 6 -1.8759 -3.1615 4.6826 26 6 -1.0903 -2.1334 5.4997 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 0.7095 1.1616 -3.4845 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2494 36 1 1.8198 0.9437 2.4401 37 1 1.6586 -1.7220 3.6874 38 1 3.1116 -0.6939 3.6870 39 1 3.3318 1.0869 5.2203 40 1 2.4815 2.2911 7.1907 41 1 0.1719 1.9274 7.9594 42 1 -1.2939 0.3568 6.7595 43 1 -2.4124 0.0570 4.8020 44 1 -1.4074 0.4714 3.3928 45 1 -1.9472 -1.7115 2.3574 46 1 -3.4340 -0.8006 2.7169 47 1 -3.6152 -3.1938 3.4090 48 1 -3.7424 -2.0889 4.7994 49 1 -1.2313 -3.5824 3.9109 50 1 -2.2251 -3.9583 5.3393 51 1 -0.2261 -2.6161 5.9563 52 1 -1.7314 -1.7232 6.2799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839164072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:51 Heat of formation + Delta-G solvation = 8.538101 kcal Electronic energy + Delta-G solvation = -27969.068134 eV Core-core repulsion = 24546.070410 eV Total energy + Delta-G solvation = -3422.997724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20465 -38.92992 -38.39827 -35.66840 -34.52021 -33.27414 -31.69662 -31.43323 -29.99610 -27.46729 -27.22270 -26.85322 -25.26624 -24.47407 -23.90885 -22.85041 -21.64329 -20.42929 -20.25684 -18.18048 -17.81528 -17.07201 -16.60358 -16.45083 -15.94586 -15.82603 -15.46077 -15.43551 -15.12024 -14.83774 -14.43034 -14.41872 -14.16801 -13.95231 -13.89778 -13.70452 -13.28351 -13.26722 -12.98523 -12.95883 -12.79101 -12.56952 -12.44210 -12.18798 -12.10892 -12.08118 -11.99695 -11.97248 -11.57666 -11.30929 -11.26601 -11.19063 -10.90078 -10.56389 -10.30906 -9.73575 -9.44010 -9.19805 -8.99331 -7.93461 -6.10047 0.44497 0.48290 1.44289 1.44816 1.51749 2.48431 2.81527 2.96772 3.28324 3.69572 3.92699 3.97945 4.01969 4.04894 4.09458 4.24704 4.36110 4.42793 4.48860 4.51874 4.60712 4.62722 4.65294 4.73129 4.75592 4.82011 4.89429 4.91757 4.95487 4.98713 5.05761 5.07604 5.15259 5.20687 5.23513 5.29405 5.33922 5.36982 5.50106 5.52387 5.54518 5.60129 5.63293 5.72343 5.73779 5.81748 6.02470 6.20481 6.23648 6.32628 6.39528 6.54409 6.66016 6.73301 6.99581 7.57033 9.04274 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013955 B = 0.003936 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.029402 B = 7112.792621 C = 8348.414646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.063 3.937 3 C -0.118 4.118 4 C -0.526 4.526 5 H 0.042 0.958 6 C 0.024 3.976 7 N -0.903 5.903 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.097 3.903 13 N -0.665 5.665 14 C 0.117 3.883 15 C -0.074 4.074 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.113 4.113 19 C -0.160 4.160 20 C 0.102 3.898 21 N -0.501 5.501 22 C 0.080 3.920 23 C -0.115 4.115 24 C -0.114 4.114 25 C -0.113 4.113 26 C 0.063 3.937 27 H 0.031 0.969 28 H 0.044 0.956 29 H 0.006 0.994 30 H 0.015 0.985 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.257 0.743 34 H 0.003 0.997 35 H 0.043 0.957 36 H 0.331 0.669 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.125 0.875 43 H 0.037 0.963 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.053 0.947 50 H 0.084 0.916 51 H 0.068 0.932 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 -1.567 21.207 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 C -0.176 4.176 4 C -0.564 4.564 5 H 0.060 0.940 6 C -0.175 4.175 7 N -0.542 5.542 8 Si 0.769 3.231 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C -0.032 4.032 13 N -0.296 5.296 14 C -0.011 4.011 15 C -0.076 4.076 16 C -0.137 4.137 17 C -0.144 4.144 18 C -0.132 4.132 19 C -0.180 4.180 20 C 0.008 3.992 21 N -0.223 5.223 22 C -0.046 4.046 23 C -0.153 4.153 24 C -0.151 4.151 25 C -0.150 4.150 26 C -0.063 4.063 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.025 0.975 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.021 0.979 35 H 0.062 0.938 36 H 0.149 0.851 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.147 0.853 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.143 0.857 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.072 0.928 50 H 0.103 0.897 51 H 0.087 0.913 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.937 -2.026 20.652 21.330 hybrid contribution 0.929 0.151 -0.749 1.203 sum -4.008 -1.875 19.903 20.389 Atomic orbital electron populations 1.21345 0.97500 0.97335 0.98921 1.18102 0.92980 0.92121 0.90534 1.21636 0.97221 0.98957 0.99758 1.21403 1.31138 1.11858 0.92044 0.93974 1.25500 0.95330 0.95645 1.01016 1.69965 1.37401 1.23593 1.23212 0.85873 0.78623 0.78848 0.79773 1.20218 1.21061 1.20155 1.21749 0.94454 0.97012 0.90035 1.60470 1.63345 1.05472 1.00302 1.20573 0.95170 0.97973 0.87419 1.19837 0.93409 0.97903 0.96432 1.21245 1.00067 0.96192 0.96232 1.21385 0.96360 0.99947 0.96675 1.21292 0.93919 0.97780 1.00195 1.21787 1.00604 0.98706 0.96892 1.18713 0.92746 0.94780 0.93004 1.59328 1.18777 1.11009 1.33145 1.21886 0.90033 0.95890 0.96798 1.21529 0.98797 0.96839 0.98090 1.21538 0.97354 0.97246 0.98991 1.21559 0.96610 0.97414 0.99448 1.22138 0.98535 0.92056 0.93603 0.94982 0.93687 0.97506 0.96629 0.92646 0.95093 0.93399 0.97904 0.93837 0.85052 0.91235 0.95783 0.85285 0.83764 0.83884 0.85673 0.94469 0.92560 0.93265 0.91211 0.91373 0.91227 0.92781 0.89702 0.91338 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -4.64 8.09 71.98 0.58 -4.05 16 2 C 0.06 3.11 0.57 -52.93 -0.03 3.08 16 3 C -0.12 -5.67 7.92 71.98 0.57 -5.10 16 4 C -0.53 -28.94 8.01 25.60 0.21 -28.73 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.30 16 6 C 0.02 1.32 5.15 84.66 0.44 1.76 16 7 N -0.90 -51.03 9.35 21.45 0.20 -50.83 16 8 Si 0.94 43.97 29.54 68.60 2.03 46.00 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 C 0.10 4.14 4.59 86.30 0.40 4.54 16 13 N -0.66 -24.17 5.70 -517.92 -2.95 -27.12 16 14 C 0.12 3.68 5.44 85.55 0.47 4.14 16 15 C -0.07 -2.05 5.41 -19.73 -0.11 -2.15 16 16 C -0.12 -2.76 9.66 22.25 0.22 -2.54 16 17 C -0.13 -2.43 10.04 22.29 0.22 -2.20 16 18 C -0.11 -2.13 10.04 22.25 0.22 -1.91 16 19 C -0.16 -3.50 8.70 22.40 0.19 -3.31 16 20 C 0.10 2.67 4.66 38.22 0.18 2.85 16 21 N -0.50 -13.30 3.77 -695.39 -2.62 -15.92 16 22 C 0.08 2.15 5.17 86.33 0.45 2.60 16 23 C -0.11 -2.96 6.09 30.65 0.19 -2.77 16 24 C -0.11 -2.30 6.00 30.68 0.18 -2.12 16 25 C -0.11 -2.29 6.09 30.64 0.19 -2.10 16 26 C 0.06 1.37 5.11 86.32 0.44 1.81 16 27 H 0.03 1.47 7.60 -2.39 -0.02 1.45 16 28 H 0.04 2.46 6.07 -2.39 -0.01 2.45 16 29 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 2.97 6.07 -2.39 -0.01 2.96 16 32 H 0.03 1.32 6.57 -2.39 -0.02 1.30 16 33 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.33 12.09 6.76 -89.69 -0.61 11.49 16 37 H 0.07 2.34 7.80 -2.39 -0.02 2.32 16 38 H 0.02 0.73 8.00 -2.39 -0.02 0.71 16 39 H 0.13 2.70 8.04 -2.91 -0.02 2.68 16 40 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.13 2.41 7.13 -2.91 -0.02 2.39 16 43 H 0.04 0.88 7.57 -2.39 -0.02 0.86 16 44 H 0.06 1.82 8.11 -2.39 -0.02 1.80 16 45 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 48 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 51 H 0.07 1.50 8.11 -2.38 -0.02 1.48 16 52 H 0.04 0.81 7.32 -2.39 -0.02 0.79 16 Total: -1.00 -58.97 395.18 1.91 -57.06 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.26 Total: 27.03 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 5.00 Total: -36.21 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -5.37 Total: -93.87 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -58.97 1.91 -57.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839164072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.593 kcal (2) G-P(sol) polarization free energy of solvation -58.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds