Wall clock time and date at job start Tue Mar 31 2020 10:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38304 * 119.92532 * 2 1 4 4 C 1.38088 * 120.07187 * 179.97438 * 3 2 1 5 5 C 1.38927 * 119.92585 * 0.28063 * 4 3 2 6 6 N 1.39669 * 120.07768 * 179.74380 * 5 4 3 7 7 C 1.46958 * 111.00264 * 236.04960 * 6 5 4 8 8 C 1.53047 * 109.36749 * 176.81110 * 7 6 5 9 9 N 1.46955 * 109.36748 * 58.39765 * 8 7 6 10 10 C 1.46897 * 111.00041 * 176.81728 * 9 8 7 11 11 H 1.09008 * 109.47011 * 178.95384 * 10 9 8 12 12 C 1.52994 * 109.47685 * 58.95247 * 10 9 8 13 13 C 1.53001 * 109.46845 * 298.94858 * 10 9 8 14 14 C 1.50698 * 109.47551 * 295.00148 * 13 10 9 15 15 H 1.08007 * 119.99360 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00233 * 179.97438 * 14 13 10 17 17 N 1.31514 * 119.99985 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99852 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47464 * 89.99833 * 18 16 14 20 20 H 1.48511 * 109.46906 * 209.99647 * 18 16 14 21 21 H 1.48493 * 109.47070 * 329.99383 * 18 16 14 22 22 C 1.46960 * 110.87934 * 300.68113 * 9 8 7 23 23 H 1.09001 * 109.49186 * 299.35627 * 22 9 8 24 24 C 1.52995 * 109.49143 * 179.30906 * 22 9 8 25 25 C 1.46955 * 111.00337 * 112.24598 * 6 5 4 26 26 C 1.38893 * 119.85082 * 359.46821 * 5 4 3 27 27 C 1.38126 * 119.92270 * 0.50933 * 26 5 4 28 28 C 1.50699 * 119.96358 * 179.74613 * 27 26 5 29 29 H 1.09002 * 109.46805 * 89.99804 * 1 2 3 30 30 H 1.09003 * 109.47770 * 210.00013 * 1 2 3 31 31 H 1.08994 * 109.47217 * 330.00364 * 1 2 3 32 32 H 1.07999 * 119.96413 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.03354 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.48549 * 296.77610 * 7 6 5 35 35 H 1.08996 * 109.49518 * 56.83711 * 7 6 5 36 36 H 1.08999 * 109.49386 * 178.36919 * 8 7 6 37 37 H 1.09007 * 109.48912 * 298.41048 * 8 7 6 38 38 H 1.09000 * 109.47551 * 59.99719 * 12 10 9 39 39 H 1.08997 * 109.47801 * 179.97438 * 12 10 9 40 40 H 1.08999 * 109.47087 * 300.00387 * 12 10 9 41 41 H 1.08995 * 109.46966 * 55.00432 * 13 10 9 42 42 H 1.09006 * 109.46622 * 175.00101 * 13 10 9 43 43 H 0.97004 * 119.99985 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.47207 * 59.99978 * 24 22 9 45 45 H 1.08996 * 109.47521 * 179.97438 * 24 22 9 46 46 H 1.08999 * 109.47094 * 300.00089 * 24 22 9 47 47 H 1.09002 * 109.48733 * 303.15810 * 25 6 5 48 48 H 1.08993 * 109.48632 * 63.22150 * 25 6 5 49 49 H 1.07997 * 120.04001 * 180.27386 * 26 5 4 50 50 H 1.09001 * 109.47616 * 270.01912 * 28 27 26 51 51 H 1.09006 * 109.47276 * 30.02275 * 28 27 26 52 52 H 1.09004 * 109.47217 * 150.01576 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2740 -0.0001 -0.0048 6 7 5.6707 -0.0002 -0.0097 7 6 6.1934 -0.7636 -1.1515 8 6 7.7211 -0.6732 -1.1659 9 7 8.2522 -1.1957 0.1008 10 6 9.7211 -1.1957 0.0957 11 1 10.0879 -1.5697 1.0517 12 6 10.2305 0.2303 -0.1233 13 6 10.2272 -2.0969 -1.0325 14 6 9.8295 -3.5233 -0.7528 15 1 9.2712 -3.7630 0.1402 16 6 10.1774 -4.5220 -1.6373 17 7 9.8299 -5.7668 -1.3934 18 14 11.1423 -4.1072 -3.1820 19 1 12.5967 -4.1956 -2.8959 20 1 10.7903 -5.0679 -4.2584 21 1 10.8068 -2.7285 -3.6199 22 6 7.7296 -0.4321 1.2426 23 1 8.0311 0.6113 1.1509 24 6 8.2880 -1.0125 2.5434 25 6 6.2018 -0.5227 1.2570 26 6 3.5780 -1.2020 0.0005 27 6 2.1967 -1.1983 0.0004 28 6 1.4406 -2.5019 0.0004 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3635 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6552 2.1329 0.0004 33 1 4.1160 2.1386 0.0001 34 1 5.8917 -1.8071 -1.0598 35 1 5.7958 -0.3500 -2.0782 36 1 8.1125 -1.2625 -1.9950 37 1 8.0226 0.3675 -1.2852 38 1 9.8700 0.8724 0.6804 39 1 11.3204 0.2304 -0.1267 40 1 9.8638 0.6043 -1.0792 41 1 9.7892 -1.7763 -1.9777 42 1 11.3133 -2.0277 -1.0932 43 1 10.0749 -6.4695 -2.0155 44 1 9.3762 -0.9493 2.5318 45 1 7.9006 -0.4457 3.3900 46 1 7.9856 -2.0557 2.6351 47 1 5.8104 0.0668 2.0861 48 1 5.9003 -1.5633 1.3760 49 1 4.1161 -2.1384 0.0008 50 1 1.2586 -2.8165 -1.0273 51 1 2.0279 -3.2627 0.5146 52 1 0.4883 -2.3696 0.5139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839504600.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:38 Heat of formation + Delta-G solvation = 35.339737 kcal Electronic energy + Delta-G solvation = -27617.620916 eV Core-core repulsion = 24195.785399 eV Total energy + Delta-G solvation = -3421.835517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.35583 -38.95687 -36.42451 -33.47334 -32.66132 -32.08624 -31.81840 -30.31023 -27.92135 -27.37195 -26.99157 -26.45377 -24.50384 -22.84858 -22.51283 -21.64933 -20.27813 -19.81744 -18.29388 -16.77707 -16.55903 -15.87459 -15.64566 -15.21828 -15.07930 -14.66576 -14.33917 -14.08159 -13.88899 -13.62886 -13.51215 -13.09358 -12.93129 -12.92593 -12.72853 -12.52419 -12.16036 -12.09512 -12.01108 -11.94304 -11.69805 -11.58587 -11.43501 -11.26611 -11.19476 -11.05020 -10.99348 -10.61817 -10.53841 -10.35524 -9.91738 -9.56396 -9.46592 -9.00894 -8.76596 -8.46556 -8.42418 -8.26133 -7.47739 -5.91432 -3.85426 1.26592 1.37638 3.34751 3.42948 3.45065 3.65491 3.94149 4.43522 4.53702 4.73102 4.77066 4.94755 4.98782 5.12995 5.28809 5.32615 5.35948 5.39949 5.42369 5.46150 5.54363 5.59726 5.61654 5.67698 5.70993 5.71562 5.76361 5.77578 5.84135 5.89826 5.92308 5.95506 6.01309 6.10176 6.17307 6.21032 6.31336 6.35632 6.42741 6.49387 6.55641 6.57715 6.61266 6.63459 6.84877 6.88126 7.08995 7.12809 7.37028 7.54690 7.82168 7.85388 7.98196 8.72053 9.21572 9.71847 11.22522 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.003524 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.085249 B = 7942.977504 C = 8815.524743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.098 4.098 3 C -0.115 4.115 4 C -0.101 4.101 5 C 0.096 3.904 6 N -0.507 5.507 7 C 0.063 3.937 8 C 0.058 3.942 9 N -0.505 5.505 10 C 0.093 3.907 11 H 0.081 0.919 12 C -0.187 4.187 13 C -0.009 4.009 14 C -0.489 4.489 15 H 0.079 0.921 16 C 0.062 3.938 17 N -0.908 5.908 18 Si 0.871 3.129 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.268 1.268 22 C 0.081 3.919 23 H 0.043 0.957 24 C -0.145 4.145 25 C 0.072 3.928 26 C -0.142 4.142 27 C -0.078 4.078 28 C -0.118 4.118 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.017 0.983 42 H 0.013 0.987 43 H 0.259 0.741 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.047 0.953 49 H 0.123 0.877 50 H 0.070 0.930 51 H 0.066 0.934 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.362 14.036 4.249 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.133 4.133 4 C -0.120 4.120 5 C 0.002 3.998 6 N -0.228 5.228 7 C -0.064 4.064 8 C -0.070 4.070 9 N -0.229 5.229 10 C -0.014 4.014 11 H 0.099 0.901 12 C -0.246 4.246 13 C -0.046 4.046 14 C -0.528 4.528 15 H 0.097 0.903 16 C -0.138 4.138 17 N -0.548 5.548 18 Si 0.699 3.301 19 H -0.206 1.206 20 H -0.217 1.217 21 H -0.193 1.193 22 C -0.028 4.028 23 H 0.061 0.939 24 C -0.203 4.203 25 C -0.055 4.055 26 C -0.162 4.162 27 C -0.079 4.079 28 C -0.175 4.175 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.035 0.965 42 H 0.031 0.969 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.065 0.935 49 H 0.141 0.859 50 H 0.088 0.912 51 H 0.085 0.915 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.324 13.842 4.175 21.067 hybrid contribution 0.660 0.111 -0.996 1.200 sum -14.663 13.953 3.179 20.489 Atomic orbital electron populations 1.20828 0.91556 1.02593 1.02136 1.19730 0.95788 0.92678 1.01603 1.20904 0.93871 0.97257 1.01282 1.20981 0.93352 0.97454 1.00219 1.18860 0.89009 0.92513 0.99397 1.59873 1.03768 1.55135 1.04070 1.22256 0.95536 0.96430 0.92172 1.22157 0.92633 0.98034 0.94187 1.62269 1.08105 1.51720 1.00809 1.21733 0.85562 0.92549 1.01603 0.90076 1.22548 1.01394 0.99737 1.00960 1.19726 0.95182 0.96214 0.93517 1.21046 1.34012 0.89006 1.08689 0.90317 1.25006 0.96017 0.95074 0.97665 1.69912 1.47812 0.99919 1.37168 0.86923 0.80718 0.78348 0.84071 1.20606 1.21661 1.19319 1.21616 0.92984 0.95843 0.92361 0.93928 1.21841 1.01359 1.01838 0.95226 1.22228 0.94644 0.98551 0.90059 1.21661 0.94113 0.98785 1.01677 1.19632 0.93354 0.94855 1.00055 1.20873 0.99948 0.94253 1.02385 0.91389 0.91303 0.91845 0.86126 0.85687 0.93125 0.90914 0.88949 0.94806 0.93583 0.92657 0.92941 0.96496 0.96895 0.93104 0.91916 0.93031 0.91517 0.91048 0.93458 0.85914 0.91162 0.91525 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.60 36.01 0.35 -0.55 16 2 C -0.10 -1.05 5.88 -104.59 -0.62 -1.66 16 3 C -0.11 -1.23 9.69 -39.61 -0.38 -1.61 16 4 C -0.10 -1.23 9.97 -39.38 -0.39 -1.63 16 5 C 0.10 1.33 4.72 -83.79 -0.40 0.93 16 6 N -0.51 -7.51 4.68 -170.96 -0.80 -8.31 16 7 C 0.06 1.01 5.26 -3.77 -0.02 0.99 16 8 C 0.06 1.02 4.82 -3.77 -0.02 1.00 16 9 N -0.50 -9.35 4.23 -218.57 -0.92 -10.27 16 10 C 0.09 1.81 1.97 -67.72 -0.13 1.67 16 11 H 0.08 1.62 5.98 -51.92 -0.31 1.31 16 12 C -0.19 -3.06 8.49 37.15 0.32 -2.74 16 13 C -0.01 -0.21 3.33 -27.88 -0.09 -0.30 16 14 C -0.49 -13.64 9.39 -34.44 -0.32 -13.97 16 15 H 0.08 2.41 7.99 -52.48 -0.42 1.99 16 16 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 17 N -0.91 -28.11 13.96 55.43 0.77 -27.34 16 18 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 21 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 22 C 0.08 1.27 2.19 -67.65 -0.15 1.12 16 23 H 0.04 0.67 6.59 -51.93 -0.34 0.33 16 24 C -0.14 -2.11 8.87 37.16 0.33 -1.78 16 25 C 0.07 1.06 4.68 -3.77 -0.02 1.05 16 26 C -0.14 -1.93 8.33 -39.38 -0.33 -2.26 16 27 C -0.08 -0.93 5.88 -104.65 -0.62 -1.54 16 28 C -0.12 -1.14 9.60 36.01 0.35 -0.79 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.48 5.94 -51.93 -0.31 0.18 16 31 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.05 0.89 7.06 -51.93 -0.37 0.52 16 35 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 36 H 0.09 1.82 6.07 -51.93 -0.32 1.50 16 37 H 0.03 0.57 6.47 -51.93 -0.34 0.24 16 38 H 0.05 0.68 6.59 -51.93 -0.34 0.34 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.85 6.46 -51.93 -0.34 0.52 16 41 H 0.02 0.40 5.17 -51.93 -0.27 0.13 16 42 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.06 0.93 6.25 -51.93 -0.32 0.60 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 48 H 0.05 0.77 7.66 -51.93 -0.40 0.37 16 49 H 0.12 1.77 7.06 -52.49 -0.37 1.40 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 52 H 0.07 0.55 5.94 -51.93 -0.31 0.24 16 LS Contribution 385.59 15.07 5.81 5.81 Total: -1.00 -30.40 385.59 -11.00 -41.41 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -8.95 Total: 1.96 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -2.24 Total: -20.36 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.95 Total: -45.92 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.40 -11.00 -41.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839504600.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.746 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds