Wall clock time and date at job start Tue Mar 31 2020 10:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38304 * 119.92532 * 2 1 4 4 C 1.38088 * 120.07187 * 179.97438 * 3 2 1 5 5 C 1.38927 * 119.92585 * 0.28063 * 4 3 2 6 6 N 1.39669 * 120.07768 * 179.74380 * 5 4 3 7 7 C 1.46958 * 111.00264 * 236.04960 * 6 5 4 8 8 C 1.53047 * 109.36749 * 176.81110 * 7 6 5 9 9 N 1.46955 * 109.36748 * 58.39765 * 8 7 6 10 10 C 1.46897 * 111.00041 * 176.81728 * 9 8 7 11 11 H 1.09008 * 109.47011 * 178.95384 * 10 9 8 12 12 C 1.52994 * 109.47685 * 58.95247 * 10 9 8 13 13 C 1.53001 * 109.46845 * 298.94858 * 10 9 8 14 14 C 1.50698 * 109.47551 * 295.00148 * 13 10 9 15 15 H 1.08007 * 119.99360 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00233 * 179.97438 * 14 13 10 17 17 N 1.31514 * 119.99985 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99852 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47464 * 89.99833 * 18 16 14 20 20 H 1.48511 * 109.46906 * 209.99647 * 18 16 14 21 21 H 1.48493 * 109.47070 * 329.99383 * 18 16 14 22 22 C 1.46960 * 110.87934 * 300.68113 * 9 8 7 23 23 H 1.09001 * 109.49186 * 299.35627 * 22 9 8 24 24 C 1.52995 * 109.49143 * 179.30906 * 22 9 8 25 25 C 1.46955 * 111.00337 * 112.24598 * 6 5 4 26 26 C 1.38893 * 119.85082 * 359.46821 * 5 4 3 27 27 C 1.38126 * 119.92270 * 0.50933 * 26 5 4 28 28 C 1.50699 * 119.96358 * 179.74613 * 27 26 5 29 29 H 1.09002 * 109.46805 * 89.99804 * 1 2 3 30 30 H 1.09003 * 109.47770 * 210.00013 * 1 2 3 31 31 H 1.08994 * 109.47217 * 330.00364 * 1 2 3 32 32 H 1.07999 * 119.96413 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.03354 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.48549 * 296.77610 * 7 6 5 35 35 H 1.08996 * 109.49518 * 56.83711 * 7 6 5 36 36 H 1.08999 * 109.49386 * 178.36919 * 8 7 6 37 37 H 1.09007 * 109.48912 * 298.41048 * 8 7 6 38 38 H 1.09000 * 109.47551 * 59.99719 * 12 10 9 39 39 H 1.08997 * 109.47801 * 179.97438 * 12 10 9 40 40 H 1.08999 * 109.47087 * 300.00387 * 12 10 9 41 41 H 1.08995 * 109.46966 * 55.00432 * 13 10 9 42 42 H 1.09006 * 109.46622 * 175.00101 * 13 10 9 43 43 H 0.97004 * 119.99985 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.47207 * 59.99978 * 24 22 9 45 45 H 1.08996 * 109.47521 * 179.97438 * 24 22 9 46 46 H 1.08999 * 109.47094 * 300.00089 * 24 22 9 47 47 H 1.09002 * 109.48733 * 303.15810 * 25 6 5 48 48 H 1.08993 * 109.48632 * 63.22150 * 25 6 5 49 49 H 1.07997 * 120.04001 * 180.27386 * 26 5 4 50 50 H 1.09001 * 109.47616 * 270.01912 * 28 27 26 51 51 H 1.09006 * 109.47276 * 30.02275 * 28 27 26 52 52 H 1.09004 * 109.47217 * 150.01576 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2740 -0.0001 -0.0048 6 7 5.6707 -0.0002 -0.0097 7 6 6.1934 -0.7636 -1.1515 8 6 7.7211 -0.6732 -1.1659 9 7 8.2522 -1.1957 0.1008 10 6 9.7211 -1.1957 0.0957 11 1 10.0879 -1.5697 1.0517 12 6 10.2305 0.2303 -0.1233 13 6 10.2272 -2.0969 -1.0325 14 6 9.8295 -3.5233 -0.7528 15 1 9.2712 -3.7630 0.1402 16 6 10.1774 -4.5220 -1.6373 17 7 9.8299 -5.7668 -1.3934 18 14 11.1423 -4.1072 -3.1820 19 1 12.5967 -4.1956 -2.8959 20 1 10.7903 -5.0679 -4.2584 21 1 10.8068 -2.7285 -3.6199 22 6 7.7296 -0.4321 1.2426 23 1 8.0311 0.6113 1.1509 24 6 8.2880 -1.0125 2.5434 25 6 6.2018 -0.5227 1.2570 26 6 3.5780 -1.2020 0.0005 27 6 2.1967 -1.1983 0.0004 28 6 1.4406 -2.5019 0.0004 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3635 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6552 2.1329 0.0004 33 1 4.1160 2.1386 0.0001 34 1 5.8917 -1.8071 -1.0598 35 1 5.7958 -0.3500 -2.0782 36 1 8.1125 -1.2625 -1.9950 37 1 8.0226 0.3675 -1.2852 38 1 9.8700 0.8724 0.6804 39 1 11.3204 0.2304 -0.1267 40 1 9.8638 0.6043 -1.0792 41 1 9.7892 -1.7763 -1.9777 42 1 11.3133 -2.0277 -1.0932 43 1 10.0749 -6.4695 -2.0155 44 1 9.3762 -0.9493 2.5318 45 1 7.9006 -0.4457 3.3900 46 1 7.9856 -2.0557 2.6351 47 1 5.8104 0.0668 2.0861 48 1 5.9003 -1.5633 1.3760 49 1 4.1161 -2.1384 0.0008 50 1 1.2586 -2.8165 -1.0273 51 1 2.0279 -3.2627 0.5146 52 1 0.4883 -2.3696 0.5139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839504600.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:37 Heat of formation + Delta-G solvation = 17.957799 kcal Electronic energy + Delta-G solvation = -27618.374653 eV Core-core repulsion = 24195.785399 eV Total energy + Delta-G solvation = -3422.589255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48072 -40.12433 -37.66095 -35.12310 -33.92827 -33.58995 -32.87298 -31.62957 -29.69526 -28.31444 -28.22501 -27.45902 -25.63238 -24.72044 -23.59658 -22.80073 -21.66330 -20.92185 -19.70925 -18.76862 -17.89281 -16.94430 -16.80122 -16.60223 -16.24090 -16.09065 -15.76253 -15.27062 -15.10908 -14.76031 -14.67613 -14.56767 -14.27165 -13.99411 -13.88504 -13.61755 -13.50778 -13.37239 -13.33593 -13.11150 -12.89906 -12.77921 -12.63802 -12.55953 -12.45271 -12.33924 -12.08271 -12.04430 -11.91198 -11.81724 -11.65576 -11.31287 -11.21401 -10.95688 -10.66906 -9.70107 -9.60068 -9.26005 -8.88164 -8.17401 -6.15918 0.32713 0.45230 1.35809 1.37633 1.48228 2.41327 2.73229 2.78107 3.02585 3.21351 3.80166 3.91643 3.97486 3.99267 4.09584 4.13527 4.25474 4.28892 4.31036 4.34361 4.41825 4.43800 4.46393 4.58884 4.61582 4.67952 4.72430 4.74216 4.80340 4.84633 4.87139 4.89543 4.92364 4.96941 5.01400 5.07127 5.10344 5.12815 5.15523 5.18871 5.27759 5.31687 5.41110 5.47389 5.60994 5.61729 5.73899 5.75659 5.82952 5.97154 6.35116 6.43413 6.46867 6.57327 6.92397 7.44688 9.00069 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.003524 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.085249 B = 7942.977504 C = 8815.524743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.111 4.111 4 C -0.104 4.104 5 C 0.073 3.927 6 N -0.498 5.498 7 C 0.071 3.929 8 C 0.064 3.936 9 N -0.532 5.532 10 C 0.097 3.903 11 H 0.070 0.930 12 C -0.176 4.176 13 C -0.006 4.006 14 C -0.485 4.485 15 H 0.034 0.966 16 C -0.002 4.002 17 N -0.959 5.959 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.291 1.291 21 H -0.249 1.249 22 C 0.085 3.915 23 H 0.055 0.945 24 C -0.140 4.140 25 C 0.077 3.923 26 C -0.160 4.160 27 C -0.089 4.089 28 C -0.117 4.117 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.151 0.849 33 H 0.136 0.864 34 H 0.022 0.978 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.041 0.959 47 H 0.090 0.910 48 H 0.022 0.978 49 H 0.098 0.902 50 H 0.074 0.926 51 H 0.056 0.944 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.445 17.412 3.907 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.129 4.129 4 C -0.123 4.123 5 C -0.021 4.021 6 N -0.219 5.219 7 C -0.056 4.056 8 C -0.064 4.064 9 N -0.257 5.257 10 C -0.011 4.011 11 H 0.088 0.912 12 C -0.234 4.234 13 C -0.044 4.044 14 C -0.524 4.524 15 H 0.052 0.948 16 C -0.197 4.197 17 N -0.601 5.601 18 Si 0.766 3.234 19 H -0.195 1.195 20 H -0.217 1.217 21 H -0.173 1.173 22 C -0.023 4.023 23 H 0.073 0.927 24 C -0.198 4.198 25 C -0.049 4.049 26 C -0.180 4.180 27 C -0.090 4.090 28 C -0.173 4.173 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.153 0.847 34 H 0.040 0.960 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.060 0.940 47 H 0.108 0.892 48 H 0.041 0.959 49 H 0.116 0.884 50 H 0.093 0.907 51 H 0.075 0.925 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.412 17.244 3.846 24.114 hybrid contribution 0.863 -0.977 -0.796 1.528 sum -15.549 16.267 3.050 22.708 Atomic orbital electron populations 1.20897 0.89106 1.03863 1.03123 1.20133 0.97587 0.92066 0.99900 1.21268 0.93361 0.98530 0.99780 1.21137 0.94187 0.96959 0.99991 1.18971 0.88357 0.93311 1.01429 1.59904 1.04750 1.53960 1.03296 1.22103 0.94785 0.95200 0.93500 1.22043 0.93306 0.98076 0.92999 1.62177 1.07854 1.53514 1.02127 1.21532 0.86292 0.93897 0.99375 0.91168 1.22398 1.01944 0.97323 1.01776 1.19673 0.95451 0.94035 0.95218 1.21259 1.32528 0.91713 1.06867 0.94767 1.25918 0.97487 0.94781 1.01515 1.70087 1.49960 1.01260 1.38823 0.85794 0.79311 0.78889 0.79403 1.19489 1.21743 1.17254 1.21661 0.93264 0.95910 0.91513 0.92743 1.21809 1.01224 1.00761 0.95969 1.22180 0.94268 0.97515 0.90969 1.21579 0.95161 0.97888 1.03411 1.19906 0.92757 0.96477 0.99863 1.20905 1.00507 0.93080 1.02852 0.90383 0.90535 0.90154 0.83136 0.84661 0.95967 0.89829 0.91549 0.93354 0.91705 0.91671 0.92670 0.96299 0.96289 0.93148 0.92159 0.90001 0.93984 0.89161 0.95942 0.88398 0.90705 0.92521 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.60 71.24 0.68 -0.70 16 2 C -0.10 -1.85 5.88 -19.84 -0.12 -1.97 16 3 C -0.11 -2.06 9.69 22.25 0.22 -1.85 16 4 C -0.10 -2.35 9.97 22.40 0.22 -2.12 16 5 C 0.07 2.00 4.72 38.21 0.18 2.18 16 6 N -0.50 -14.73 4.68 -694.81 -3.25 -17.98 16 7 C 0.07 2.36 5.26 86.31 0.45 2.82 16 8 C 0.06 2.27 4.82 86.31 0.42 2.69 16 9 N -0.53 -20.09 4.23 -845.41 -3.58 -23.67 16 10 C 0.10 3.75 1.97 44.91 0.09 3.83 16 11 H 0.07 2.84 5.98 -2.38 -0.01 2.83 16 12 C -0.18 -5.32 8.49 71.98 0.61 -4.71 16 13 C -0.01 -0.30 3.33 29.85 0.10 -0.20 16 14 C -0.49 -28.14 9.39 25.60 0.24 -27.90 16 15 H 0.03 2.23 7.99 -2.91 -0.02 2.21 16 16 C 0.00 -0.14 5.47 84.65 0.46 0.33 16 17 N -0.96 -61.86 13.96 21.44 0.30 -61.56 16 18 Si 0.94 45.43 27.47 68.60 1.88 47.31 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 22 C 0.08 2.63 2.19 44.92 0.10 2.72 16 23 H 0.05 1.59 6.59 -2.39 -0.02 1.57 16 24 C -0.14 -4.05 8.87 71.98 0.64 -3.41 16 25 C 0.08 2.32 4.68 86.31 0.40 2.72 16 26 C -0.16 -4.52 8.33 22.40 0.19 -4.34 16 27 C -0.09 -2.07 5.88 -19.88 -0.12 -2.19 16 28 C -0.12 -2.20 9.60 71.24 0.68 -1.52 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.83 5.94 -2.39 -0.01 0.81 16 31 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 32 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.02 0.85 7.06 -2.39 -0.02 0.83 16 35 H 0.08 2.54 8.13 -2.39 -0.02 2.52 16 36 H 0.07 2.67 6.07 -2.39 -0.01 2.66 16 37 H 0.05 1.57 6.47 -2.38 -0.02 1.55 16 38 H 0.06 1.73 6.59 -2.39 -0.02 1.72 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 1.65 6.46 -2.39 -0.02 1.63 16 41 H 0.02 0.88 5.17 -2.39 -0.01 0.87 16 42 H 0.02 0.86 7.57 -2.38 -0.02 0.85 16 43 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.06 1.76 6.25 -2.39 -0.01 1.75 16 45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.09 2.35 8.13 -2.39 -0.02 2.33 16 48 H 0.02 0.78 7.66 -2.39 -0.02 0.76 16 49 H 0.10 3.16 7.06 -2.91 -0.02 3.14 16 50 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.06 1.16 8.08 -2.38 -0.02 1.14 16 52 H 0.09 1.28 5.94 -2.39 -0.01 1.26 16 Total: -1.00 -68.84 385.59 1.64 -67.20 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.83 Total: 22.31 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 5.45 Total: -33.60 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -6.53 Total: -103.21 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -68.84 1.64 -67.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839504600.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.153 kcal (2) G-P(sol) polarization free energy of solvation -68.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds