Wall clock time and date at job start Tue Mar 31 2020 10:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38309 * 119.92221 * 2 1 4 4 C 1.38079 * 120.07534 * 179.76820 * 3 2 1 5 5 C 1.38933 * 119.92450 * 0.48812 * 4 3 2 6 6 N 1.39676 * 120.07934 * 179.78705 * 5 4 3 7 7 C 1.46950 * 111.00090 * 235.90225 * 6 5 4 8 8 C 1.53051 * 109.36217 * 183.16622 * 7 6 5 9 9 N 1.46959 * 109.38318 * 301.63313 * 8 7 6 10 10 C 1.46898 * 110.99917 * 183.18040 * 9 8 7 11 11 H 1.09001 * 109.47115 * 179.81563 * 10 9 8 12 12 C 1.53006 * 109.46948 * 299.81041 * 10 9 8 13 13 C 1.52999 * 109.47478 * 59.81142 * 10 9 8 14 14 C 1.50697 * 109.47311 * 62.54276 * 13 10 9 15 15 H 1.08004 * 119.99433 * 0.06901 * 14 13 10 16 16 C 1.37876 * 120.00255 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99788 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00005 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47228 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47110 * 120.00028 * 18 16 14 21 21 H 1.48501 * 109.47238 * 239.99816 * 18 16 14 22 22 C 1.46956 * 110.87958 * 59.31021 * 9 8 7 23 23 H 1.08991 * 109.48780 * 60.66626 * 22 9 8 24 24 C 1.52993 * 109.48810 * 180.71347 * 22 9 8 25 25 C 1.46959 * 110.99794 * 359.72610 * 6 5 4 26 26 C 1.38892 * 119.84824 * 359.51651 * 5 4 3 27 27 C 1.38127 * 119.92790 * 0.24862 * 26 5 4 28 28 C 1.50692 * 119.96550 * 180.02562 * 27 26 5 29 29 H 1.09006 * 109.46896 * 269.97379 * 1 2 3 30 30 H 1.09000 * 109.47434 * 29.97263 * 1 2 3 31 31 H 1.09003 * 109.47321 * 149.98228 * 1 2 3 32 32 H 1.08001 * 119.96362 * 0.04909 * 3 2 1 33 33 H 1.08005 * 120.04157 * 180.27549 * 4 3 2 34 34 H 1.09004 * 109.47159 * 63.21447 * 7 6 5 35 35 H 1.08996 * 109.51257 * 303.14307 * 7 6 5 36 36 H 1.09001 * 109.48830 * 181.65298 * 8 7 6 37 37 H 1.09003 * 109.49132 * 61.61211 * 8 7 6 38 38 H 1.09004 * 109.46983 * 302.46308 * 12 10 9 39 39 H 1.08992 * 109.47040 * 62.46922 * 12 10 9 40 40 H 1.08998 * 109.46793 * 182.46710 * 12 10 9 41 41 H 1.09002 * 109.47065 * 182.54045 * 13 10 9 42 42 H 1.08998 * 109.47028 * 302.53986 * 13 10 9 43 43 H 0.97003 * 119.99913 * 180.02562 * 17 16 14 44 44 H 1.09009 * 109.47541 * 53.46606 * 24 22 9 45 45 H 1.08999 * 109.47651 * 173.46713 * 24 22 9 46 46 H 1.09001 * 109.47626 * 293.46867 * 24 22 9 47 47 H 1.09001 * 109.48599 * 56.83794 * 25 6 5 48 48 H 1.09001 * 109.50665 * 296.79035 * 25 6 5 49 49 H 1.08002 * 120.03965 * 180.23058 * 26 5 4 50 50 H 1.09007 * 109.47170 * 90.00208 * 28 27 26 51 51 H 1.08999 * 109.47270 * 210.00300 * 28 27 26 52 52 H 1.09004 * 109.47209 * 330.00467 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2024 0.0048 5 6 4.2740 0.0002 -0.0006 6 7 5.6708 0.0002 -0.0002 7 6 6.1977 -0.7636 -1.1396 8 6 7.7255 -0.8060 -1.0591 9 7 8.2521 0.5660 -1.0592 10 6 9.7211 0.5661 -1.0588 11 1 10.0844 1.5937 -1.0621 12 6 10.2308 -0.1509 0.1931 13 6 10.2315 -0.1594 -2.3054 14 6 9.7817 0.5821 -3.5377 15 1 9.1918 1.4817 -3.4413 16 6 10.1240 0.1128 -4.7881 17 7 10.8435 -0.9818 -4.9053 18 14 9.5658 1.0317 -6.3157 19 1 8.7744 2.2228 -5.9153 20 1 10.7537 1.4649 -7.0945 21 1 8.7250 0.1375 -7.1517 22 6 7.7251 1.3294 0.0806 23 1 8.0270 0.8486 1.0110 24 6 8.2785 2.7551 0.0398 25 6 6.1974 1.3722 -0.0002 26 6 3.5780 -1.2018 -0.0006 27 6 2.1968 -1.1983 -0.0005 28 6 1.4408 -2.5019 0.0000 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6550 2.1330 0.0008 33 1 4.1159 2.1388 0.0093 34 1 5.8958 -0.2828 -2.0702 35 1 5.8038 -1.7795 -1.1103 36 1 8.1201 -1.3470 -1.9192 37 1 8.0275 -1.3114 -0.1418 38 1 9.8315 0.3399 1.0808 39 1 9.9041 -1.1905 0.1748 40 1 11.3198 -0.1126 0.2157 41 1 11.3206 -0.1989 -2.2824 42 1 9.8316 -1.1732 -2.3251 43 1 11.0847 -1.3118 -5.7851 44 1 8.0758 3.1958 -0.9364 45 1 7.7996 3.3533 0.8149 46 1 9.3547 2.7323 0.2115 47 1 5.8027 1.9132 0.8598 48 1 5.8957 1.8778 -0.9176 49 1 4.1162 -2.1381 -0.0010 50 1 1.2585 -2.8158 1.0278 51 1 0.4886 -2.3699 -0.5139 52 1 2.0284 -3.2629 -0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839504602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:40 Heat of formation + Delta-G solvation = 31.665532 kcal Electronic energy + Delta-G solvation = -27569.291943 eV Core-core repulsion = 24147.297100 eV Total energy + Delta-G solvation = -3421.994843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.46051 -38.90519 -36.48074 -33.42682 -32.76284 -32.09828 -31.78389 -30.18898 -27.91391 -27.35711 -27.03103 -25.94526 -24.67247 -23.18807 -22.51951 -21.38444 -20.64036 -19.58574 -18.30772 -16.98860 -16.20575 -15.99062 -15.43589 -15.17637 -14.71231 -14.66330 -14.49188 -14.22770 -13.91943 -13.79639 -13.54976 -13.24040 -13.01166 -12.91464 -12.59535 -12.24148 -12.11452 -12.03216 -11.94299 -11.79778 -11.69337 -11.58150 -11.37988 -11.17390 -11.10919 -11.00677 -10.86931 -10.59856 -10.53371 -10.32706 -10.22567 -9.73708 -9.41853 -9.11988 -8.97362 -8.70630 -8.27041 -7.62692 -7.46670 -5.90149 -3.87884 1.37829 1.42296 3.36749 3.44666 3.49932 3.61895 3.97934 4.45403 4.55782 4.73912 4.79234 4.99232 5.00564 5.07543 5.20114 5.28630 5.33713 5.37407 5.44089 5.47494 5.52945 5.54883 5.62947 5.69361 5.70956 5.72342 5.74580 5.77767 5.84601 5.92175 5.94835 6.00415 6.01968 6.06823 6.14920 6.19211 6.32496 6.36996 6.40210 6.44927 6.55752 6.64797 6.66107 6.73048 6.85501 6.99373 7.14890 7.40951 7.54791 7.69487 7.90409 8.00848 8.12056 8.57161 9.19140 9.74273 11.21764 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.003505 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.152158 B = 7985.618783 C = 8717.206732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.124 4.124 3 C -0.090 4.090 4 C -0.175 4.175 5 C 0.122 3.878 6 N -0.492 5.492 7 C 0.064 3.936 8 C 0.056 3.944 9 N -0.506 5.506 10 C 0.085 3.915 11 H 0.075 0.925 12 C -0.184 4.184 13 C 0.028 3.972 14 C -0.488 4.488 15 H 0.062 0.938 16 C 0.051 3.949 17 N -0.903 5.903 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.287 1.287 22 C 0.077 3.923 23 H 0.043 0.957 24 C -0.143 4.143 25 C 0.062 3.938 26 C -0.140 4.140 27 C -0.064 4.064 28 C -0.116 4.116 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.256 0.744 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.054 0.946 49 H 0.123 0.877 50 H 0.069 0.931 51 H 0.069 0.931 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.764 1.515 12.711 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.125 4.125 3 C -0.109 4.109 4 C -0.195 4.195 5 C 0.024 3.976 6 N -0.206 5.206 7 C -0.062 4.062 8 C -0.072 4.072 9 N -0.230 5.230 10 C -0.022 4.022 11 H 0.093 0.907 12 C -0.243 4.243 13 C -0.009 4.009 14 C -0.527 4.527 15 H 0.080 0.920 16 C -0.149 4.149 17 N -0.544 5.544 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.214 1.214 21 H -0.214 1.214 22 C -0.032 4.032 23 H 0.061 0.939 24 C -0.201 4.201 25 C -0.065 4.065 26 C -0.161 4.161 27 C -0.064 4.064 28 C -0.173 4.173 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.072 0.928 49 H 0.141 0.859 50 H 0.087 0.913 51 H 0.087 0.913 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.587 1.402 12.553 20.849 hybrid contribution -0.105 0.402 -0.740 0.849 sum -16.692 1.804 11.812 20.528 Atomic orbital electron populations 1.20768 0.91697 1.02418 1.01809 1.19600 0.95676 0.92646 1.04582 1.20815 0.93690 0.97213 0.99192 1.21286 0.94568 0.97443 1.06244 1.19006 0.88514 0.93493 0.96608 1.59255 1.04122 1.15419 1.41853 1.22353 0.95933 0.97484 0.90382 1.22201 0.92102 0.91165 1.01726 1.62347 1.08633 1.12592 1.39473 1.21941 0.85054 1.00017 0.95233 0.90719 1.22513 1.01387 1.01103 0.99330 1.19240 0.95773 0.95412 0.90507 1.21206 1.31376 1.10004 0.90121 0.92012 1.25003 0.95658 0.95210 0.99000 1.69972 1.38951 1.22381 1.23128 0.86607 0.78256 0.79989 0.83551 1.19819 1.21401 1.21371 1.21648 0.92702 0.95243 0.93626 0.93870 1.21814 1.01072 0.95078 1.02140 1.22367 0.95068 0.87870 1.01186 1.20629 0.93167 0.96930 1.05325 1.19557 0.93157 0.94762 0.98961 1.20849 1.00006 0.94214 1.02194 0.91733 0.92047 0.91508 0.86402 0.85652 0.92753 0.90384 0.88096 0.94855 0.93955 0.92972 0.92676 0.96357 0.96326 0.93390 0.91467 0.93003 0.92089 0.90552 0.92758 0.85903 0.91267 0.91257 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.60 36.01 0.35 -0.56 16 2 C -0.12 -1.38 5.88 -104.59 -0.62 -2.00 16 3 C -0.09 -1.05 9.69 -39.61 -0.38 -1.43 16 4 C -0.17 -2.26 8.82 -39.38 -0.35 -2.60 16 5 C 0.12 1.72 5.64 -83.78 -0.47 1.25 16 6 N -0.49 -7.33 4.75 -170.96 -0.81 -8.15 16 7 C 0.06 1.02 5.38 -3.77 -0.02 1.00 16 8 C 0.06 1.01 4.83 -3.77 -0.02 0.99 16 9 N -0.51 -9.36 4.17 -218.57 -0.91 -10.27 16 10 C 0.09 1.69 1.98 -67.71 -0.13 1.55 16 11 H 0.07 1.50 6.20 -51.93 -0.32 1.18 16 12 C -0.18 -3.17 8.49 37.16 0.32 -2.85 16 13 C 0.03 0.69 4.19 -27.89 -0.12 0.57 16 14 C -0.49 -13.39 8.78 -34.44 -0.30 -13.69 16 15 H 0.06 1.71 7.73 -52.48 -0.41 1.30 16 16 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 17 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 18 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C 0.08 1.19 2.16 -67.66 -0.15 1.05 16 23 H 0.04 0.69 6.51 -51.93 -0.34 0.35 16 24 C -0.14 -2.01 8.64 37.15 0.32 -1.68 16 25 C 0.06 0.89 3.58 -3.77 -0.01 0.88 16 26 C -0.14 -1.83 8.84 -39.38 -0.35 -2.18 16 27 C -0.06 -0.74 5.88 -104.66 -0.62 -1.35 16 28 C -0.12 -1.01 9.60 36.00 0.35 -0.67 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.45 8.08 -51.93 -0.42 0.04 16 31 H 0.07 0.49 5.94 -51.93 -0.31 0.18 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.13 1.51 5.81 -52.48 -0.31 1.20 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.12 6.82 -51.93 -0.35 0.77 16 36 H 0.10 2.07 6.08 -51.93 -0.32 1.76 16 37 H 0.03 0.58 6.54 -51.93 -0.34 0.24 16 38 H 0.04 0.66 6.44 -51.93 -0.33 0.32 16 39 H 0.05 0.91 6.61 -51.93 -0.34 0.56 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.02 0.49 6.20 -51.93 -0.32 0.16 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 44 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.87 6.66 -51.93 -0.35 0.52 16 47 H 0.08 0.97 7.16 -51.93 -0.37 0.60 16 48 H 0.05 0.83 7.60 -51.93 -0.39 0.44 16 49 H 0.12 1.52 7.18 -52.49 -0.38 1.15 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.52 5.94 -51.93 -0.31 0.21 16 52 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -29.77 385.43 -11.34 -41.12 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.84 Total: 1.15 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -2.30 Total: -20.40 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.99 Total: -44.58 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.77 -11.34 -41.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839504602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.781 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds