Wall clock time and date at job start Tue Mar 31 2020 10:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38309 * 119.92221 * 2 1 4 4 C 1.38079 * 120.07534 * 179.76820 * 3 2 1 5 5 C 1.38933 * 119.92450 * 0.48812 * 4 3 2 6 6 N 1.39676 * 120.07934 * 179.78705 * 5 4 3 7 7 C 1.46950 * 111.00090 * 235.90225 * 6 5 4 8 8 C 1.53051 * 109.36217 * 183.16622 * 7 6 5 9 9 N 1.46959 * 109.38318 * 301.63313 * 8 7 6 10 10 C 1.46898 * 110.99917 * 183.18040 * 9 8 7 11 11 H 1.09001 * 109.47115 * 179.81563 * 10 9 8 12 12 C 1.53006 * 109.46948 * 299.81041 * 10 9 8 13 13 C 1.52999 * 109.47478 * 59.81142 * 10 9 8 14 14 C 1.50697 * 109.47311 * 62.54276 * 13 10 9 15 15 H 1.08004 * 119.99433 * 0.06901 * 14 13 10 16 16 C 1.37876 * 120.00255 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99788 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00005 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47228 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47110 * 120.00028 * 18 16 14 21 21 H 1.48501 * 109.47238 * 239.99816 * 18 16 14 22 22 C 1.46956 * 110.87958 * 59.31021 * 9 8 7 23 23 H 1.08991 * 109.48780 * 60.66626 * 22 9 8 24 24 C 1.52993 * 109.48810 * 180.71347 * 22 9 8 25 25 C 1.46959 * 110.99794 * 359.72610 * 6 5 4 26 26 C 1.38892 * 119.84824 * 359.51651 * 5 4 3 27 27 C 1.38127 * 119.92790 * 0.24862 * 26 5 4 28 28 C 1.50692 * 119.96550 * 180.02562 * 27 26 5 29 29 H 1.09006 * 109.46896 * 269.97379 * 1 2 3 30 30 H 1.09000 * 109.47434 * 29.97263 * 1 2 3 31 31 H 1.09003 * 109.47321 * 149.98228 * 1 2 3 32 32 H 1.08001 * 119.96362 * 0.04909 * 3 2 1 33 33 H 1.08005 * 120.04157 * 180.27549 * 4 3 2 34 34 H 1.09004 * 109.47159 * 63.21447 * 7 6 5 35 35 H 1.08996 * 109.51257 * 303.14307 * 7 6 5 36 36 H 1.09001 * 109.48830 * 181.65298 * 8 7 6 37 37 H 1.09003 * 109.49132 * 61.61211 * 8 7 6 38 38 H 1.09004 * 109.46983 * 302.46308 * 12 10 9 39 39 H 1.08992 * 109.47040 * 62.46922 * 12 10 9 40 40 H 1.08998 * 109.46793 * 182.46710 * 12 10 9 41 41 H 1.09002 * 109.47065 * 182.54045 * 13 10 9 42 42 H 1.08998 * 109.47028 * 302.53986 * 13 10 9 43 43 H 0.97003 * 119.99913 * 180.02562 * 17 16 14 44 44 H 1.09009 * 109.47541 * 53.46606 * 24 22 9 45 45 H 1.08999 * 109.47651 * 173.46713 * 24 22 9 46 46 H 1.09001 * 109.47626 * 293.46867 * 24 22 9 47 47 H 1.09001 * 109.48599 * 56.83794 * 25 6 5 48 48 H 1.09001 * 109.50665 * 296.79035 * 25 6 5 49 49 H 1.08002 * 120.03965 * 180.23058 * 26 5 4 50 50 H 1.09007 * 109.47170 * 90.00208 * 28 27 26 51 51 H 1.08999 * 109.47270 * 210.00300 * 28 27 26 52 52 H 1.09004 * 109.47209 * 330.00467 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2024 0.0048 5 6 4.2740 0.0002 -0.0006 6 7 5.6708 0.0002 -0.0002 7 6 6.1977 -0.7636 -1.1396 8 6 7.7255 -0.8060 -1.0591 9 7 8.2521 0.5660 -1.0592 10 6 9.7211 0.5661 -1.0588 11 1 10.0844 1.5937 -1.0621 12 6 10.2308 -0.1509 0.1931 13 6 10.2315 -0.1594 -2.3054 14 6 9.7817 0.5821 -3.5377 15 1 9.1918 1.4817 -3.4413 16 6 10.1240 0.1128 -4.7881 17 7 10.8435 -0.9818 -4.9053 18 14 9.5658 1.0317 -6.3157 19 1 8.7744 2.2228 -5.9153 20 1 10.7537 1.4649 -7.0945 21 1 8.7250 0.1375 -7.1517 22 6 7.7251 1.3294 0.0806 23 1 8.0270 0.8486 1.0110 24 6 8.2785 2.7551 0.0398 25 6 6.1974 1.3722 -0.0002 26 6 3.5780 -1.2018 -0.0006 27 6 2.1968 -1.1983 -0.0005 28 6 1.4408 -2.5019 0.0000 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6550 2.1330 0.0008 33 1 4.1159 2.1388 0.0093 34 1 5.8958 -0.2828 -2.0702 35 1 5.8038 -1.7795 -1.1103 36 1 8.1201 -1.3470 -1.9192 37 1 8.0275 -1.3114 -0.1418 38 1 9.8315 0.3399 1.0808 39 1 9.9041 -1.1905 0.1748 40 1 11.3198 -0.1126 0.2157 41 1 11.3206 -0.1989 -2.2824 42 1 9.8316 -1.1732 -2.3251 43 1 11.0847 -1.3118 -5.7851 44 1 8.0758 3.1958 -0.9364 45 1 7.7996 3.3533 0.8149 46 1 9.3547 2.7323 0.2115 47 1 5.8027 1.9132 0.8598 48 1 5.8957 1.8778 -0.9176 49 1 4.1162 -2.1381 -0.0010 50 1 1.2585 -2.8158 1.0278 51 1 0.4886 -2.3699 -0.5139 52 1 2.0284 -3.2629 -0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839504602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:40 Heat of formation + Delta-G solvation = 15.672452 kcal Electronic energy + Delta-G solvation = -27569.985455 eV Core-core repulsion = 24147.297100 eV Total energy + Delta-G solvation = -3422.688355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57611 -40.07390 -37.71468 -35.16339 -33.81538 -33.69842 -32.76649 -31.51154 -29.28179 -28.78815 -28.24872 -26.88912 -25.79192 -25.12174 -23.63547 -22.51970 -21.95520 -20.70953 -19.73750 -18.34216 -18.07526 -17.09172 -16.75104 -16.55784 -16.13629 -15.89613 -15.74665 -15.37638 -15.07397 -14.91064 -14.70895 -14.58769 -14.13622 -13.84110 -13.78817 -13.54657 -13.37183 -13.29082 -13.20571 -13.08694 -12.87712 -12.75926 -12.68543 -12.50311 -12.49015 -12.34817 -12.29304 -12.13498 -11.90440 -11.84937 -11.57222 -11.27109 -11.08081 -10.92843 -10.47105 -10.45018 -9.61268 -8.93135 -8.65265 -8.09940 -6.13937 0.44557 0.49267 1.39124 1.40875 1.53158 2.46531 2.60514 2.95063 3.04552 3.26481 3.78309 3.87446 3.98375 4.00434 4.12330 4.14071 4.26946 4.29000 4.32812 4.36681 4.41767 4.45277 4.48111 4.57266 4.59838 4.70508 4.71440 4.75831 4.81156 4.87026 4.88379 4.91355 4.96271 5.00073 5.03469 5.09758 5.13852 5.18653 5.21948 5.23724 5.28186 5.38602 5.44326 5.51234 5.52801 5.73358 5.79713 5.90724 5.92355 6.02963 6.30420 6.39928 6.43566 6.55076 7.00393 7.51938 9.02235 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.003505 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.152158 B = 7985.618783 C = 8717.206732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.126 4.126 3 C -0.097 4.097 4 C -0.184 4.184 5 C 0.097 3.903 6 N -0.493 5.493 7 C 0.075 3.925 8 C 0.064 3.936 9 N -0.523 5.523 10 C 0.095 3.905 11 H 0.074 0.926 12 C -0.174 4.174 13 C 0.034 3.966 14 C -0.493 4.493 15 H 0.057 0.943 16 C -0.003 4.003 17 N -0.939 5.939 18 Si 0.952 3.048 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.285 1.285 22 C 0.079 3.921 23 H 0.047 0.953 24 C -0.138 4.138 25 C 0.068 3.932 26 C -0.153 4.153 27 C -0.072 4.072 28 C -0.115 4.115 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.031 0.969 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.057 0.943 41 H -0.009 1.009 42 H -0.003 1.003 43 H 0.258 0.742 44 H 0.051 0.949 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.099 0.901 48 H 0.042 0.958 49 H 0.122 0.878 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.282 2.688 13.894 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.204 4.204 5 C -0.001 4.001 6 N -0.208 5.208 7 C -0.051 4.051 8 C -0.064 4.064 9 N -0.248 5.248 10 C -0.013 4.013 11 H 0.092 0.908 12 C -0.233 4.233 13 C -0.003 4.003 14 C -0.531 4.531 15 H 0.076 0.924 16 C -0.199 4.199 17 N -0.582 5.582 18 Si 0.778 3.222 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.211 1.211 22 C -0.030 4.030 23 H 0.064 0.936 24 C -0.196 4.196 25 C -0.059 4.059 26 C -0.174 4.174 27 C -0.073 4.073 28 C -0.171 4.171 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.009 0.991 42 H 0.016 0.984 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.076 0.924 47 H 0.117 0.883 48 H 0.060 0.940 49 H 0.140 0.860 50 H 0.098 0.902 51 H 0.103 0.897 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.125 2.588 13.751 23.697 hybrid contribution 0.591 0.025 -1.083 1.234 sum -18.534 2.613 12.668 22.601 Atomic orbital electron populations 1.20831 0.89411 1.03462 1.02874 1.20032 0.97439 0.92268 1.02943 1.21136 0.93321 0.98504 0.98602 1.21444 0.95403 0.97219 1.06377 1.19140 0.87972 0.94461 0.98520 1.59290 1.05073 1.15443 1.40962 1.22155 0.94485 0.98275 0.90172 1.22014 0.93346 0.90783 1.00265 1.62260 1.07706 1.13108 1.41745 1.21632 0.86266 0.99342 0.94036 0.90840 1.22376 1.01577 1.00581 0.98735 1.19092 0.93942 0.94769 0.92480 1.21477 1.30662 1.09741 0.91264 0.92438 1.25798 0.95904 0.96059 1.02163 1.70094 1.40314 1.23919 1.23824 0.85592 0.77916 0.78846 0.79829 1.19117 1.20794 1.21125 1.21739 0.93462 0.95530 0.92252 0.93566 1.21787 1.01124 0.94320 1.02378 1.22346 0.94152 0.87894 1.01514 1.20789 0.94114 0.96661 1.05802 1.19921 0.92798 0.96352 0.98226 1.20900 1.00298 0.92777 1.03130 0.90519 0.91078 0.90470 0.84232 0.85124 0.95042 0.89232 0.91670 0.94323 0.91641 0.93540 0.92360 0.99055 0.98431 0.93345 0.92986 0.89909 0.92385 0.88325 0.94004 0.86050 0.90154 0.89743 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.60 71.24 0.68 -0.75 16 2 C -0.13 -2.51 5.88 -19.84 -0.12 -2.62 16 3 C -0.10 -2.04 9.69 22.25 0.22 -1.82 16 4 C -0.18 -4.50 8.82 22.40 0.20 -4.31 16 5 C 0.10 2.65 5.64 38.21 0.22 2.86 16 6 N -0.49 -14.47 4.75 -694.79 -3.30 -17.78 16 7 C 0.07 2.45 5.38 86.31 0.46 2.92 16 8 C 0.06 2.38 4.83 86.31 0.42 2.80 16 9 N -0.52 -19.62 4.17 -845.42 -3.52 -23.14 16 10 C 0.10 3.84 1.98 44.92 0.09 3.93 16 11 H 0.07 2.97 6.20 -2.39 -0.01 2.96 16 12 C -0.17 -5.91 8.49 71.98 0.61 -5.30 16 13 C 0.03 1.77 4.19 29.85 0.12 1.90 16 14 C -0.49 -27.80 8.78 25.60 0.22 -27.58 16 15 H 0.06 3.24 7.73 -2.91 -0.02 3.21 16 16 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 17 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 18 Si 0.95 45.74 29.54 68.60 2.03 47.76 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 C 0.08 2.35 2.16 44.92 0.10 2.45 16 23 H 0.05 1.38 6.51 -2.39 -0.02 1.37 16 24 C -0.14 -3.65 8.64 71.98 0.62 -3.03 16 25 C 0.07 1.88 3.58 86.31 0.31 2.19 16 26 C -0.15 -3.90 8.84 22.40 0.20 -3.70 16 27 C -0.07 -1.55 5.88 -19.89 -0.12 -1.67 16 28 C -0.11 -1.75 9.60 71.23 0.68 -1.07 16 29 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.08 0.86 5.94 -2.39 -0.01 0.85 16 32 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.13 2.94 5.81 -2.91 -0.02 2.93 16 34 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.09 2.66 6.82 -2.39 -0.02 2.64 16 36 H 0.06 2.86 6.08 -2.39 -0.01 2.85 16 37 H 0.04 1.37 6.54 -2.39 -0.02 1.36 16 38 H 0.06 1.92 6.44 -2.38 -0.02 1.91 16 39 H 0.05 1.62 6.61 -2.39 -0.02 1.60 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.00 -0.14 6.20 -2.39 -0.01 -0.16 16 43 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 1.56 6.66 -2.39 -0.02 1.54 16 47 H 0.10 2.30 7.16 -2.39 -0.02 2.28 16 48 H 0.04 1.26 7.60 -2.39 -0.02 1.24 16 49 H 0.12 3.00 7.18 -2.91 -0.02 2.98 16 50 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 51 H 0.08 1.02 5.94 -2.39 -0.01 1.01 16 52 H 0.07 1.00 8.08 -2.38 -0.02 0.98 16 Total: -1.00 -65.46 385.43 1.76 -63.70 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.89 Total: 19.26 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 5.38 Total: -32.53 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -6.54 Total: -98.19 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -65.46 1.76 -63.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839504602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.374 kcal (2) G-P(sol) polarization free energy of solvation -65.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds