Wall clock time and date at job start Tue Mar 31 2020 10:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38308 * 119.92992 * 2 1 4 4 C 1.38082 * 120.07785 * 179.76255 * 3 2 1 5 5 C 1.38933 * 119.92243 * 0.49834 * 4 3 2 6 6 N 1.39677 * 120.07696 * 179.78990 * 5 4 3 7 7 C 1.46959 * 110.99574 * 235.92221 * 6 5 4 8 8 C 1.53053 * 109.36179 * 183.18412 * 7 6 5 9 9 N 1.46956 * 109.36530 * 301.59940 * 8 7 6 10 10 C 1.46898 * 110.99841 * 183.19018 * 9 8 7 11 11 H 1.09004 * 109.47015 * 203.56450 * 10 9 8 12 12 C 1.53000 * 109.47410 * 83.56952 * 10 9 8 13 13 C 1.52993 * 109.47406 * 323.56509 * 10 9 8 14 14 C 1.50706 * 109.47148 * 289.97573 * 13 10 9 15 15 H 1.07999 * 119.99749 * 324.22446 * 14 13 10 16 16 C 1.37875 * 120.00030 * 144.22891 * 14 13 10 17 17 N 1.31509 * 120.00145 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99719 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47641 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47185 * 120.00073 * 18 16 14 21 21 H 1.48503 * 109.47146 * 239.99567 * 18 16 14 22 22 C 1.46956 * 110.88173 * 59.31668 * 9 8 7 23 23 H 1.08994 * 109.49003 * 60.65352 * 22 9 8 24 24 C 1.53003 * 109.48762 * 180.71717 * 22 9 8 25 25 C 1.46962 * 110.99618 * 359.71304 * 6 5 4 26 26 C 1.38891 * 119.85120 * 359.50142 * 5 4 3 27 27 C 1.38126 * 119.92639 * 0.26167 * 26 5 4 28 28 C 1.50699 * 119.96614 * 179.97438 * 27 26 5 29 29 H 1.08998 * 109.46943 * 269.98177 * 1 2 3 30 30 H 1.09003 * 109.46731 * 29.97090 * 1 2 3 31 31 H 1.08995 * 109.47489 * 149.97098 * 1 2 3 32 32 H 1.07999 * 119.95788 * 0.05254 * 3 2 1 33 33 H 1.07996 * 120.04027 * 180.27524 * 4 3 2 34 34 H 1.09000 * 109.48522 * 303.14713 * 7 6 5 35 35 H 1.08993 * 109.49255 * 63.22081 * 7 6 5 36 36 H 1.09002 * 109.48949 * 61.55821 * 8 7 6 37 37 H 1.08995 * 109.49105 * 181.60866 * 8 7 6 38 38 H 1.09006 * 109.47217 * 55.04092 * 12 10 9 39 39 H 1.09002 * 109.47080 * 175.03803 * 12 10 9 40 40 H 1.08996 * 109.46775 * 295.04388 * 12 10 9 41 41 H 1.09005 * 109.47168 * 49.97036 * 13 10 9 42 42 H 1.09001 * 109.47692 * 169.97437 * 13 10 9 43 43 H 0.96999 * 120.00140 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.47233 * 162.90093 * 24 22 9 45 45 H 1.09009 * 109.46638 * 282.89427 * 24 22 9 46 46 H 1.08999 * 109.47451 * 42.89112 * 24 22 9 47 47 H 1.09005 * 109.48730 * 56.84952 * 25 6 5 48 48 H 1.08993 * 109.50629 * 296.79600 * 25 6 5 49 49 H 1.07998 * 120.03963 * 180.23180 * 26 5 4 50 50 H 1.09008 * 109.46696 * 90.00206 * 28 27 26 51 51 H 1.08994 * 109.47238 * 209.99743 * 28 27 26 52 52 H 1.08995 * 109.47323 * 330.00636 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5779 1.2022 0.0050 5 6 4.2740 -0.0001 -0.0005 6 7 5.6708 -0.0002 0.0000 7 6 6.1977 -0.7636 -1.1399 8 6 7.7255 -0.8066 -1.0590 9 7 8.2523 0.5654 -1.0590 10 6 9.7212 0.5652 -1.0585 11 1 10.0845 1.5072 -0.6476 12 6 10.2317 0.4035 -2.4917 13 6 10.2309 -0.5952 -0.2016 14 6 9.9403 -0.3132 1.2500 15 1 10.0009 0.6972 1.6264 16 6 9.5973 -1.3452 2.0975 17 7 9.5232 -2.5756 1.6391 18 14 9.2379 -0.9957 3.8970 19 1 9.3899 0.4581 4.1589 20 1 7.8488 -1.4138 4.2146 21 1 10.1897 -1.7538 4.7482 22 6 7.7252 1.3287 0.0808 23 1 8.0268 0.8478 1.0112 24 6 8.2788 2.7545 0.0399 25 6 6.1975 1.3717 -0.0001 26 6 3.5780 -1.2020 -0.0005 27 6 2.1967 -1.1984 -0.0005 28 6 1.4406 -2.5020 -0.0010 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6552 2.1329 0.0009 33 1 4.1161 2.1385 0.0094 34 1 5.8033 -1.7793 -1.1107 35 1 5.8963 -0.2826 -2.0703 36 1 8.0271 -1.3118 -0.1415 37 1 8.1201 -1.3479 -1.9188 38 1 9.7980 1.1801 -3.1218 39 1 11.3181 0.4916 -2.5026 40 1 9.9427 -0.5763 -2.8719 41 1 9.7289 -1.5155 -0.5005 42 1 11.3062 -0.7058 -0.3421 43 1 9.2815 -3.3016 2.2353 44 1 7.6747 3.3973 0.6803 45 1 9.3097 2.7543 0.3943 46 1 8.2466 3.1277 -0.9837 47 1 5.8029 1.9128 0.8600 48 1 5.8959 1.8773 -0.9173 49 1 4.1161 -2.1384 -0.0010 50 1 1.2583 -2.8166 1.0266 51 1 0.4884 -2.3695 -0.5147 52 1 2.0281 -3.2626 -0.5151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839504604.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:43 Heat of formation + Delta-G solvation = 33.515895 kcal Electronic energy + Delta-G solvation = -28234.832918 eV Core-core repulsion = 24812.918313 eV Total energy + Delta-G solvation = -3421.914605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.25028 -38.68869 -36.32107 -33.18264 -32.57708 -32.16484 -31.59297 -30.13194 -27.73572 -27.38323 -26.85396 -25.77402 -24.47001 -23.06316 -22.33254 -21.19791 -20.38927 -19.39603 -18.16709 -16.77704 -16.40561 -15.77105 -15.18892 -14.96670 -14.79301 -14.42634 -14.21274 -14.14668 -13.67565 -13.63002 -13.43707 -13.02762 -12.82137 -12.75626 -12.47936 -12.15323 -11.95685 -11.92665 -11.70336 -11.62150 -11.57139 -11.56138 -11.24512 -11.03591 -10.94592 -10.84972 -10.58830 -10.55094 -10.45783 -10.05276 -9.89346 -9.81518 -9.23379 -9.13408 -8.95910 -8.55763 -8.48602 -7.40269 -7.17216 -6.04207 -4.02262 1.53169 1.57880 3.29922 3.39290 3.40470 3.79927 4.17434 4.43889 4.75756 4.87960 4.91904 5.13398 5.16209 5.28607 5.31448 5.38865 5.47792 5.52381 5.55855 5.64815 5.66794 5.79349 5.81154 5.84179 5.86847 5.90782 5.93150 6.06692 6.07563 6.14124 6.17912 6.21904 6.26833 6.29259 6.35681 6.48907 6.54398 6.56810 6.64848 6.79420 6.81512 6.83123 6.96550 7.04238 7.08430 7.32046 7.40852 7.51629 7.67147 7.69965 7.90635 8.08182 8.14203 8.39994 9.02515 9.58330 11.05467 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.004360 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.490428 B = 6420.121011 C = 7168.203729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 C -0.091 4.091 4 C -0.178 4.178 5 C 0.127 3.873 6 N -0.483 5.483 7 C 0.069 3.931 8 C 0.041 3.959 9 N -0.520 5.520 10 C 0.074 3.926 11 H 0.066 0.934 12 C -0.134 4.134 13 C -0.022 4.022 14 C -0.512 4.512 15 H 0.052 0.948 16 C 0.069 3.931 17 N -0.890 5.890 18 Si 0.880 3.120 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.286 1.286 22 C 0.069 3.931 23 H 0.091 0.909 24 C -0.139 4.139 25 C 0.065 3.935 26 C -0.142 4.142 27 C -0.063 4.063 28 C -0.116 4.116 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.000 1.000 43 H 0.260 0.740 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.124 0.876 50 H 0.069 0.931 51 H 0.067 0.933 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.112 5.096 -5.778 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.130 4.130 3 C -0.109 4.109 4 C -0.199 4.199 5 C 0.028 3.972 6 N -0.196 5.196 7 C -0.056 4.056 8 C -0.087 4.087 9 N -0.245 5.245 10 C -0.035 4.035 11 H 0.084 0.916 12 C -0.192 4.192 13 C -0.060 4.060 14 C -0.550 4.550 15 H 0.070 0.930 16 C -0.133 4.133 17 N -0.529 5.529 18 Si 0.708 3.292 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.212 1.212 22 C -0.040 4.040 23 H 0.109 0.891 24 C -0.197 4.197 25 C -0.062 4.062 26 C -0.162 4.162 27 C -0.064 4.064 28 C -0.172 4.172 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.019 0.981 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.062 0.938 49 H 0.142 0.858 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.035 4.903 -5.744 15.938 hybrid contribution -0.071 0.094 1.296 1.301 sum -14.106 4.998 -4.448 15.612 Atomic orbital electron populations 1.20745 0.91832 1.02196 1.01742 1.19556 0.95535 0.92660 1.05225 1.20778 0.93676 0.97079 0.99417 1.21273 0.94499 0.97443 1.06716 1.19093 0.88746 0.93426 0.95966 1.59063 1.03573 1.15464 1.41540 1.22307 0.96823 0.97145 0.89310 1.22352 0.90861 0.91535 1.03958 1.62611 1.08126 1.12991 1.40739 1.21860 0.86551 1.00808 0.94239 0.91553 1.21773 0.99230 1.00689 0.97509 1.19998 0.95874 0.95571 0.94538 1.21109 1.46374 0.93497 0.94061 0.92993 1.24874 0.95073 0.95184 0.98132 1.69891 1.48598 0.99223 1.35206 0.86718 0.78070 0.78439 0.85949 1.19799 1.20812 1.21180 1.21830 0.91125 0.94319 0.96716 0.89128 1.21798 1.01052 0.95680 1.01165 1.22396 0.96120 0.87440 1.00267 1.20668 0.93135 0.97125 1.05283 1.19543 0.93147 0.94688 0.99007 1.20842 0.99839 0.94288 1.02235 0.91828 0.92201 0.91618 0.86579 0.85739 0.90682 0.94347 0.88327 0.91507 0.93676 0.93505 0.93620 0.92177 0.98130 0.93017 0.93250 0.92141 0.92654 0.90806 0.93850 0.85821 0.91271 0.91380 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.60 36.01 0.35 -0.67 16 2 C -0.13 -1.61 5.88 -104.58 -0.62 -2.23 16 3 C -0.09 -1.18 9.69 -39.61 -0.38 -1.56 16 4 C -0.18 -2.62 8.82 -39.38 -0.35 -2.96 16 5 C 0.13 2.09 5.64 -83.78 -0.47 1.61 16 6 N -0.48 -8.76 4.76 -170.95 -0.81 -9.57 16 7 C 0.07 1.23 5.38 -3.76 -0.02 1.21 16 8 C 0.04 0.83 4.22 -3.77 -0.02 0.81 16 9 N -0.52 -10.06 4.36 -218.57 -0.95 -11.01 16 10 C 0.07 1.49 2.32 -67.72 -0.16 1.33 16 11 H 0.07 1.35 5.58 -51.93 -0.29 1.06 16 12 C -0.13 -2.35 9.34 37.16 0.35 -2.01 16 13 C -0.02 -0.53 4.39 -27.88 -0.12 -0.65 16 14 C -0.51 -13.45 5.91 -34.44 -0.20 -13.66 16 15 H 0.05 1.37 7.48 -52.49 -0.39 0.98 16 16 C 0.07 1.88 5.08 -17.82 -0.09 1.79 16 17 N -0.89 -25.13 12.42 55.43 0.69 -24.45 16 18 Si 0.88 21.46 29.54 -169.99 -5.02 16.43 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.07 1.31 2.24 -67.66 -0.15 1.15 16 23 H 0.09 2.09 5.47 -51.93 -0.28 1.80 16 24 C -0.14 -2.27 8.51 37.16 0.32 -1.95 16 25 C 0.06 1.11 3.51 -3.77 -0.01 1.09 16 26 C -0.14 -2.19 8.84 -39.38 -0.35 -2.54 16 27 C -0.06 -0.84 5.88 -104.65 -0.62 -1.46 16 28 C -0.12 -1.19 9.60 36.01 0.35 -0.85 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.07 0.54 5.94 -51.93 -0.31 0.23 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.70 5.81 -52.49 -0.31 1.40 16 34 H 0.07 1.27 6.82 -51.93 -0.35 0.92 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 2.40 5.14 -51.93 -0.27 2.13 16 37 H 0.07 1.31 7.27 -51.93 -0.38 0.93 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.80 7.45 -51.93 -0.39 0.42 16 41 H 0.06 1.56 4.91 -51.93 -0.25 1.31 16 42 H 0.00 0.01 8.11 -51.93 -0.42 -0.41 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.05 0.70 8.03 -51.93 -0.42 0.29 16 45 H 0.06 1.04 6.80 -51.92 -0.35 0.69 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.19 7.16 -51.93 -0.37 0.82 16 48 H 0.04 0.71 7.59 -51.93 -0.39 0.31 16 49 H 0.12 1.91 7.18 -52.49 -0.38 1.53 16 50 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 51 H 0.07 0.59 5.94 -51.93 -0.31 0.28 16 52 H 0.06 0.64 8.08 -51.93 -0.42 0.23 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -28.07 381.29 -11.35 -39.42 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.80 Total: 4.95 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -2.20 Total: -21.52 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -1.08 Total: -45.03 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.07 -11.35 -39.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839504604.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.936 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds