Wall clock time and date at job start Tue Mar 31 2020 10:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38308 * 119.92992 * 2 1 4 4 C 1.38082 * 120.07785 * 179.76255 * 3 2 1 5 5 C 1.38933 * 119.92243 * 0.49834 * 4 3 2 6 6 N 1.39677 * 120.07696 * 179.78990 * 5 4 3 7 7 C 1.46959 * 110.99574 * 235.92221 * 6 5 4 8 8 C 1.53053 * 109.36179 * 183.18412 * 7 6 5 9 9 N 1.46956 * 109.36530 * 301.59940 * 8 7 6 10 10 C 1.46898 * 110.99841 * 183.19018 * 9 8 7 11 11 H 1.09004 * 109.47015 * 203.56450 * 10 9 8 12 12 C 1.53000 * 109.47410 * 83.56952 * 10 9 8 13 13 C 1.52993 * 109.47406 * 323.56509 * 10 9 8 14 14 C 1.50706 * 109.47148 * 289.97573 * 13 10 9 15 15 H 1.07999 * 119.99749 * 324.22446 * 14 13 10 16 16 C 1.37875 * 120.00030 * 144.22891 * 14 13 10 17 17 N 1.31509 * 120.00145 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99719 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47641 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47185 * 120.00073 * 18 16 14 21 21 H 1.48503 * 109.47146 * 239.99567 * 18 16 14 22 22 C 1.46956 * 110.88173 * 59.31668 * 9 8 7 23 23 H 1.08994 * 109.49003 * 60.65352 * 22 9 8 24 24 C 1.53003 * 109.48762 * 180.71717 * 22 9 8 25 25 C 1.46962 * 110.99618 * 359.71304 * 6 5 4 26 26 C 1.38891 * 119.85120 * 359.50142 * 5 4 3 27 27 C 1.38126 * 119.92639 * 0.26167 * 26 5 4 28 28 C 1.50699 * 119.96614 * 179.97438 * 27 26 5 29 29 H 1.08998 * 109.46943 * 269.98177 * 1 2 3 30 30 H 1.09003 * 109.46731 * 29.97090 * 1 2 3 31 31 H 1.08995 * 109.47489 * 149.97098 * 1 2 3 32 32 H 1.07999 * 119.95788 * 0.05254 * 3 2 1 33 33 H 1.07996 * 120.04027 * 180.27524 * 4 3 2 34 34 H 1.09000 * 109.48522 * 303.14713 * 7 6 5 35 35 H 1.08993 * 109.49255 * 63.22081 * 7 6 5 36 36 H 1.09002 * 109.48949 * 61.55821 * 8 7 6 37 37 H 1.08995 * 109.49105 * 181.60866 * 8 7 6 38 38 H 1.09006 * 109.47217 * 55.04092 * 12 10 9 39 39 H 1.09002 * 109.47080 * 175.03803 * 12 10 9 40 40 H 1.08996 * 109.46775 * 295.04388 * 12 10 9 41 41 H 1.09005 * 109.47168 * 49.97036 * 13 10 9 42 42 H 1.09001 * 109.47692 * 169.97437 * 13 10 9 43 43 H 0.96999 * 120.00140 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.47233 * 162.90093 * 24 22 9 45 45 H 1.09009 * 109.46638 * 282.89427 * 24 22 9 46 46 H 1.08999 * 109.47451 * 42.89112 * 24 22 9 47 47 H 1.09005 * 109.48730 * 56.84952 * 25 6 5 48 48 H 1.08993 * 109.50629 * 296.79600 * 25 6 5 49 49 H 1.07998 * 120.03963 * 180.23180 * 26 5 4 50 50 H 1.09008 * 109.46696 * 90.00206 * 28 27 26 51 51 H 1.08994 * 109.47238 * 209.99743 * 28 27 26 52 52 H 1.08995 * 109.47323 * 330.00636 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5779 1.2022 0.0050 5 6 4.2740 -0.0001 -0.0005 6 7 5.6708 -0.0002 0.0000 7 6 6.1977 -0.7636 -1.1399 8 6 7.7255 -0.8066 -1.0590 9 7 8.2523 0.5654 -1.0590 10 6 9.7212 0.5652 -1.0585 11 1 10.0845 1.5072 -0.6476 12 6 10.2317 0.4035 -2.4917 13 6 10.2309 -0.5952 -0.2016 14 6 9.9403 -0.3132 1.2500 15 1 10.0009 0.6972 1.6264 16 6 9.5973 -1.3452 2.0975 17 7 9.5232 -2.5756 1.6391 18 14 9.2379 -0.9957 3.8970 19 1 9.3899 0.4581 4.1589 20 1 7.8488 -1.4138 4.2146 21 1 10.1897 -1.7538 4.7482 22 6 7.7252 1.3287 0.0808 23 1 8.0268 0.8478 1.0112 24 6 8.2788 2.7545 0.0399 25 6 6.1975 1.3717 -0.0001 26 6 3.5780 -1.2020 -0.0005 27 6 2.1967 -1.1984 -0.0005 28 6 1.4406 -2.5020 -0.0010 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6552 2.1329 0.0009 33 1 4.1161 2.1385 0.0094 34 1 5.8033 -1.7793 -1.1107 35 1 5.8963 -0.2826 -2.0703 36 1 8.0271 -1.3118 -0.1415 37 1 8.1201 -1.3479 -1.9188 38 1 9.7980 1.1801 -3.1218 39 1 11.3181 0.4916 -2.5026 40 1 9.9427 -0.5763 -2.8719 41 1 9.7289 -1.5155 -0.5005 42 1 11.3062 -0.7058 -0.3421 43 1 9.2815 -3.3016 2.2353 44 1 7.6747 3.3973 0.6803 45 1 9.3097 2.7543 0.3943 46 1 8.2466 3.1277 -0.9837 47 1 5.8029 1.9128 0.8600 48 1 5.8959 1.8773 -0.9173 49 1 4.1161 -2.1384 -0.0010 50 1 1.2583 -2.8166 1.0266 51 1 0.4884 -2.3695 -0.5147 52 1 2.0281 -3.2626 -0.5151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839504604.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:42 Heat of formation + Delta-G solvation = 18.741879 kcal Electronic energy + Delta-G solvation = -28235.473568 eV Core-core repulsion = 24812.918313 eV Total energy + Delta-G solvation = -3422.555255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51624 -40.01751 -37.68993 -34.92889 -33.86046 -33.70787 -32.72917 -31.49684 -29.31023 -28.77691 -28.18132 -26.86692 -25.71679 -24.99065 -23.59023 -22.46005 -21.78998 -20.66717 -19.76064 -18.43724 -18.01652 -17.01274 -16.71316 -16.55812 -16.11427 -15.80440 -15.69928 -15.26906 -15.03968 -14.86987 -14.61996 -14.51615 -14.15439 -13.77872 -13.67365 -13.55656 -13.38468 -13.31165 -13.02659 -12.94155 -12.85732 -12.82886 -12.67566 -12.57197 -12.43758 -12.26599 -12.14874 -12.01298 -11.82802 -11.72350 -11.47405 -11.35276 -11.01943 -10.86545 -10.58748 -10.37080 -9.61154 -8.88986 -8.57651 -8.15043 -6.16241 0.46834 0.49848 1.31504 1.36314 1.43292 2.39201 2.66740 2.96626 3.12750 3.28533 3.85314 3.92634 4.01108 4.11464 4.15132 4.19380 4.34240 4.37192 4.41781 4.48012 4.52484 4.55891 4.61756 4.69919 4.74165 4.75414 4.78594 4.80248 4.87063 4.88250 4.91256 5.00626 5.01843 5.04848 5.16626 5.18758 5.23240 5.27896 5.32288 5.39206 5.39422 5.47499 5.52160 5.55714 5.63233 5.70427 5.80233 5.86035 5.99023 6.11979 6.29740 6.39756 6.47976 6.54104 6.93806 7.45653 8.94421 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.004360 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.490428 B = 6420.121011 C = 7168.203729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.128 4.128 3 C -0.093 4.093 4 C -0.185 4.185 5 C 0.100 3.900 6 N -0.506 5.506 7 C 0.081 3.919 8 C 0.048 3.952 9 N -0.507 5.507 10 C 0.078 3.922 11 H 0.068 0.932 12 C -0.126 4.126 13 C -0.018 4.018 14 C -0.508 4.508 15 H 0.047 0.953 16 C 0.026 3.974 17 N -0.919 5.919 18 Si 0.931 3.069 19 H -0.266 1.266 20 H -0.289 1.289 21 H -0.282 1.282 22 C 0.066 3.934 23 H 0.047 0.953 24 C -0.131 4.131 25 C 0.074 3.926 26 C -0.161 4.161 27 C -0.070 4.070 28 C -0.114 4.114 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.040 0.960 41 H 0.039 0.961 42 H -0.017 1.017 43 H 0.258 0.742 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.056 0.944 49 H 0.110 0.890 50 H 0.075 0.925 51 H 0.090 0.910 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.601 7.020 -6.321 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.129 4.129 3 C -0.111 4.111 4 C -0.206 4.206 5 C 0.002 3.998 6 N -0.220 5.220 7 C -0.045 4.045 8 C -0.081 4.081 9 N -0.231 5.231 10 C -0.030 4.030 11 H 0.086 0.914 12 C -0.184 4.184 13 C -0.056 4.056 14 C -0.546 4.546 15 H 0.066 0.934 16 C -0.172 4.172 17 N -0.559 5.559 18 Si 0.758 3.242 19 H -0.190 1.190 20 H -0.216 1.216 21 H -0.208 1.208 22 C -0.043 4.043 23 H 0.065 0.935 24 C -0.189 4.189 25 C -0.053 4.053 26 C -0.182 4.182 27 C -0.071 4.071 28 C -0.171 4.171 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.001 0.999 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.074 0.926 49 H 0.128 0.872 50 H 0.093 0.907 51 H 0.108 0.892 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.527 6.844 -6.284 18.960 hybrid contribution 0.637 -0.515 1.464 1.677 sum -15.890 6.329 -4.820 17.770 Atomic orbital electron populations 1.20814 0.89169 1.03622 1.02760 1.20015 0.97501 0.92083 1.03263 1.21143 0.93117 0.98542 0.98308 1.21427 0.95462 0.96958 1.06782 1.19214 0.87900 0.94590 0.98080 1.59072 1.05088 1.15957 1.41902 1.22119 0.94872 0.97504 0.89970 1.22171 0.92728 0.91518 1.01635 1.62732 1.07352 1.12366 1.40649 1.21778 0.87164 0.98799 0.95256 0.91400 1.21687 0.99890 1.01117 0.95669 1.19940 0.94499 0.96561 0.94597 1.21284 1.45227 0.93037 0.95081 0.93432 1.25449 0.95410 0.95125 1.01257 1.69999 1.49971 0.99855 1.36103 0.85907 0.77328 0.78574 0.82354 1.18968 1.21552 1.20817 1.21834 0.92812 0.95322 0.94328 0.93526 1.21727 1.00450 0.94191 1.02506 1.22309 0.94428 0.87408 1.01170 1.20753 0.94351 0.96466 1.06609 1.19896 0.92459 0.96537 0.98181 1.20897 1.00431 0.92812 1.02922 0.90851 0.90693 0.90379 0.83827 0.84978 0.90781 0.93484 0.92717 0.91648 0.91641 0.92556 0.94121 0.94306 0.99860 0.93307 0.91028 0.93442 0.91242 0.89966 0.92603 0.87181 0.90666 0.89184 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.60 71.24 0.68 -0.90 16 2 C -0.13 -2.86 5.88 -19.84 -0.12 -2.97 16 3 C -0.09 -2.15 9.69 22.25 0.22 -1.93 16 4 C -0.19 -5.15 8.82 22.40 0.20 -4.95 16 5 C 0.10 3.28 5.64 38.21 0.22 3.49 16 6 N -0.51 -18.58 4.76 -694.77 -3.30 -21.88 16 7 C 0.08 2.94 5.38 86.31 0.46 3.41 16 8 C 0.05 2.00 4.22 86.31 0.36 2.37 16 9 N -0.51 -19.66 4.36 -845.43 -3.69 -23.35 16 10 C 0.08 3.18 2.32 44.91 0.10 3.29 16 11 H 0.07 2.74 5.58 -2.39 -0.01 2.73 16 12 C -0.13 -4.29 9.34 71.98 0.67 -3.62 16 13 C -0.02 -0.90 4.39 29.85 0.13 -0.77 16 14 C -0.51 -27.52 5.91 25.60 0.15 -27.37 16 15 H 0.05 2.57 7.48 -2.91 -0.02 2.55 16 16 C 0.03 1.47 5.08 84.66 0.43 1.90 16 17 N -0.92 -54.01 12.42 21.45 0.27 -53.74 16 18 Si 0.93 45.20 29.54 68.60 2.03 47.22 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 22 C 0.07 2.50 2.24 44.92 0.10 2.60 16 23 H 0.05 2.20 5.47 -2.39 -0.01 2.19 16 24 C -0.13 -4.08 8.51 71.98 0.61 -3.46 16 25 C 0.07 2.47 3.51 86.31 0.30 2.77 16 26 C -0.16 -5.02 8.84 22.40 0.20 -4.82 16 27 C -0.07 -1.77 5.88 -19.88 -0.12 -1.89 16 28 C -0.11 -2.15 9.60 71.24 0.68 -1.47 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 31 H 0.08 0.97 5.94 -2.39 -0.01 0.96 16 32 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.13 3.35 5.81 -2.91 -0.02 3.33 16 34 H 0.07 2.64 6.82 -2.39 -0.02 2.63 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.05 2.81 5.14 -2.39 -0.01 2.80 16 37 H 0.07 2.67 7.27 -2.39 -0.02 2.65 16 38 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.04 1.41 7.45 -2.39 -0.02 1.39 16 41 H 0.04 2.12 4.91 -2.38 -0.01 2.11 16 42 H -0.02 -0.89 8.11 -2.39 -0.02 -0.91 16 43 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.07 1.89 8.03 -2.39 -0.02 1.87 16 45 H 0.05 1.59 6.80 -2.38 -0.02 1.57 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.08 2.57 7.16 -2.38 -0.02 2.56 16 48 H 0.06 1.72 7.59 -2.39 -0.02 1.70 16 49 H 0.11 3.59 7.18 -2.91 -0.02 3.57 16 50 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 51 H 0.09 1.28 5.94 -2.39 -0.01 1.27 16 52 H 0.06 1.21 8.08 -2.39 -0.02 1.19 16 Total: -1.00 -62.65 381.29 1.49 -61.16 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.89 Total: 24.91 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 5.29 Total: -34.32 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -6.72 Total: -98.97 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -62.65 1.49 -61.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839504604.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.899 kcal (2) G-P(sol) polarization free energy of solvation -62.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds