Wall clock time and date at job start Tue Mar 31 2020 10:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38278 * 119.93050 * 2 1 4 4 C 1.38105 * 120.08156 * 180.02562 * 3 2 1 5 5 C 1.38912 * 119.91956 * 359.97438 * 4 3 2 6 6 N 1.39675 * 120.07374 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00036 * 186.22707 * 6 5 4 8 8 C 1.46502 * 119.99857 * 6.22565 * 6 5 4 9 9 H 1.08997 * 109.50510 * 6.22559 * 8 6 5 10 10 C 1.53119 * 109.50257 * 126.30495 * 8 6 5 11 11 C 1.53120 * 109.15678 * 177.55437 * 10 8 6 12 12 C 1.53042 * 109.31266 * 302.40325 * 11 10 8 13 13 N 1.46847 * 109.52287 * 59.15882 * 12 11 10 14 14 C 1.46899 * 111.00207 * 174.16134 * 13 12 11 15 15 H 1.08994 * 109.47241 * 173.54291 * 14 13 12 16 16 C 1.53000 * 109.46916 * 53.54773 * 14 13 12 17 17 C 1.52998 * 109.46954 * 293.54689 * 14 13 12 18 18 C 1.50699 * 109.47203 * 297.59507 * 17 14 13 19 19 H 1.07997 * 119.99743 * 359.97438 * 18 17 14 20 20 C 1.37873 * 120.00112 * 180.02562 * 18 17 14 21 21 N 1.31517 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00173 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47091 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47090 * 119.99712 * 22 20 18 25 25 H 1.48497 * 109.47316 * 239.99899 * 22 20 18 26 26 C 1.46848 * 111.19641 * 298.26281 * 13 12 11 27 27 C 1.38912 * 119.85560 * 0.25353 * 5 4 3 28 28 C 1.38111 * 119.91745 * 359.49128 * 27 5 4 29 29 H 1.08996 * 109.46988 * 89.99714 * 1 2 3 30 30 H 1.09005 * 109.47009 * 210.00109 * 1 2 3 31 31 H 1.09000 * 109.46659 * 329.99664 * 1 2 3 32 32 H 1.07998 * 119.96094 * 0.04677 * 3 2 1 33 33 H 1.07993 * 120.04464 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.46746 * 269.99749 * 7 6 5 35 35 H 1.08998 * 109.46914 * 29.99915 * 7 6 5 36 36 H 1.08999 * 109.46958 * 149.99792 * 7 6 5 37 37 H 1.08995 * 109.52254 * 297.50075 * 10 8 6 38 38 H 1.09003 * 109.52111 * 57.69032 * 10 8 6 39 39 H 1.09007 * 109.50390 * 182.44309 * 11 10 8 40 40 H 1.09002 * 109.50341 * 62.36560 * 11 10 8 41 41 H 1.09000 * 109.46128 * 299.14038 * 12 11 10 42 42 H 1.09003 * 109.45216 * 179.16940 * 12 11 10 43 43 H 1.08993 * 109.47133 * 180.02562 * 16 14 13 44 44 H 1.09008 * 109.46874 * 299.99950 * 16 14 13 45 45 H 1.09000 * 109.47703 * 59.99867 * 16 14 13 46 46 H 1.09001 * 109.47403 * 57.59258 * 17 14 13 47 47 H 1.09000 * 109.46937 * 177.59378 * 17 14 13 48 48 H 0.96997 * 120.00635 * 180.02562 * 21 20 18 49 49 H 1.09004 * 109.45787 * 301.72276 * 26 13 12 50 50 H 1.08997 * 109.45322 * 181.75593 * 26 13 12 51 51 H 1.07996 * 120.03917 * 179.72417 * 27 5 4 52 52 H 1.08005 * 119.95679 * 180.24701 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2020 -0.0005 5 6 4.2740 -0.0001 -0.0005 6 7 5.6708 -0.0002 -0.0016 7 6 6.4031 -1.2616 -0.1392 8 6 6.4034 1.2611 0.1348 9 1 5.7010 2.0701 0.3353 10 6 7.4000 1.1507 1.2921 11 6 8.2036 2.4505 1.3888 12 6 8.9112 2.7084 0.0565 13 7 7.9145 2.8069 -1.0175 14 6 8.5451 3.1912 -2.2873 15 1 7.8070 3.1455 -3.0880 16 6 9.6941 2.2297 -2.5977 17 6 9.0890 4.6169 -2.1757 18 6 7.9494 5.5714 -1.9286 19 1 6.9383 5.1986 -1.8587 20 6 8.1975 6.9208 -1.7929 21 7 9.4287 7.3751 -1.8796 22 14 6.7848 8.1042 -1.4874 23 1 5.5083 7.3474 -1.4327 24 1 6.9984 8.8074 -0.1970 25 1 6.7248 9.0983 -2.5889 26 6 7.1631 1.5534 -1.1611 27 6 3.5779 -1.2023 -0.0053 28 6 2.1968 -1.1985 0.0006 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6552 2.1326 0.0008 33 1 4.1162 2.1383 -0.0010 34 1 6.5855 -1.6854 0.8483 35 1 5.8135 -1.9612 -0.7316 36 1 7.3551 -1.0765 -0.6367 37 1 6.8592 0.9859 2.2240 38 1 8.0778 0.3166 1.1108 39 1 8.9447 2.3619 2.1832 40 1 7.5305 3.2789 1.6097 41 1 9.5948 1.8867 -0.1567 42 1 9.4722 3.6410 0.1180 43 1 10.1623 2.5151 -3.5396 44 1 10.4323 2.2753 -1.7969 45 1 9.3066 1.2140 -2.6772 46 1 9.7955 4.6724 -1.3475 47 1 9.5944 4.8866 -3.1031 48 1 9.6033 8.3244 -1.7838 49 1 7.8550 0.7371 -1.3686 50 1 6.4547 1.6471 -1.9841 51 1 4.1160 -2.1386 -0.0098 52 1 1.6550 -2.1328 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839552202.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:38 Heat of formation + Delta-G solvation = 28.626195 kcal Electronic energy + Delta-G solvation = -27455.559477 eV Core-core repulsion = 24033.432838 eV Total energy + Delta-G solvation = -3422.126638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.03316 -38.81684 -36.56547 -34.18323 -32.42848 -31.69742 -31.12718 -30.05334 -29.08156 -27.46711 -27.28211 -25.06601 -24.07900 -22.81674 -22.57847 -22.17203 -20.66344 -19.31423 -18.72881 -17.31211 -16.20044 -16.03640 -15.31282 -14.97858 -14.94329 -14.43513 -14.39853 -14.11144 -14.02289 -13.77800 -13.66633 -13.50845 -13.39159 -13.04754 -12.48143 -12.34720 -12.20642 -12.08263 -12.04029 -11.97012 -11.76679 -11.48575 -11.41854 -11.16506 -11.09394 -10.75607 -10.60593 -10.51061 -10.34207 -10.26763 -10.19374 -9.92071 -9.50236 -9.16046 -8.95638 -8.86021 -8.25552 -7.49686 -7.13126 -5.88357 -3.85818 1.50756 1.63632 3.09761 3.38505 3.46255 3.51804 3.90913 4.52404 4.57931 4.81491 4.87714 4.97997 5.00288 5.11221 5.13024 5.27030 5.29017 5.37459 5.47198 5.48480 5.49306 5.53452 5.57751 5.66979 5.69546 5.73715 5.78512 5.82579 5.84823 5.90491 5.92735 5.99116 6.05791 6.06465 6.13895 6.18091 6.27931 6.39269 6.43552 6.50331 6.58155 6.62239 6.72628 6.76462 6.94934 6.97727 7.32496 7.52995 7.59003 7.68797 7.91821 8.00525 8.13124 8.58898 9.20757 9.76061 11.23732 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012187 B = 0.003773 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.967245 B = 7419.774331 C = 8917.677384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.155 4.155 3 C -0.070 4.070 4 C -0.191 4.191 5 C 0.218 3.782 6 N -0.625 5.625 7 C 0.095 3.905 8 C 0.152 3.848 9 H 0.100 0.900 10 C -0.124 4.124 11 C -0.114 4.114 12 C 0.055 3.945 13 N -0.506 5.506 14 C 0.089 3.911 15 H 0.068 0.932 16 C -0.183 4.183 17 C 0.030 3.970 18 C -0.487 4.487 19 H 0.062 0.938 20 C 0.050 3.950 21 N -0.905 5.905 22 Si 0.888 3.112 23 H -0.273 1.273 24 H -0.287 1.287 25 H -0.288 1.288 26 C 0.047 3.953 27 C -0.199 4.199 28 C -0.075 4.075 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.023 0.977 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.037 0.963 46 H 0.019 0.981 47 H 0.018 0.982 48 H 0.256 0.744 49 H 0.025 0.975 50 H 0.069 0.931 51 H 0.118 0.882 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 -18.648 5.412 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.157 4.157 3 C -0.089 4.089 4 C -0.213 4.213 5 C 0.116 3.884 6 N -0.335 5.335 7 C -0.049 4.049 8 C 0.049 3.951 9 H 0.118 0.882 10 C -0.163 4.163 11 C -0.152 4.152 12 C -0.073 4.073 13 N -0.230 5.230 14 C -0.019 4.019 15 H 0.086 0.914 16 C -0.242 4.242 17 C -0.007 4.007 18 C -0.525 4.525 19 H 0.080 0.920 20 C -0.149 4.149 21 N -0.546 5.546 22 Si 0.716 3.284 23 H -0.198 1.198 24 H -0.213 1.213 25 H -0.214 1.214 26 C -0.083 4.083 27 C -0.222 4.222 28 C -0.094 4.094 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.041 0.959 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.037 0.963 47 H 0.036 0.964 48 H 0.066 0.934 49 H 0.043 0.957 50 H 0.088 0.912 51 H 0.136 0.864 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.363 -18.129 5.543 21.144 hybrid contribution 0.033 0.042 -0.109 0.121 sum -9.330 -18.087 5.434 21.064 Atomic orbital electron populations 1.20634 0.91808 1.01987 1.01578 1.19627 0.95655 0.93148 1.07224 1.20790 0.93419 0.97335 0.97372 1.20860 0.94358 0.96915 1.09177 1.17851 0.83047 0.93818 0.93652 1.46559 1.01852 1.06371 1.78703 1.21541 0.96845 0.85958 1.00525 1.21100 0.93924 0.85447 0.94673 0.88221 1.21919 0.97790 0.98513 0.98034 1.21561 0.99288 0.97054 0.97340 1.22112 0.93470 1.01140 0.90584 1.61978 1.26583 1.28232 1.06212 1.21899 0.93420 0.97202 0.89360 0.91388 1.22517 1.00711 0.99135 1.01845 1.19201 0.96374 0.88051 0.97058 1.21197 0.94010 0.90947 1.46392 0.92016 1.25000 0.95240 0.98486 0.96179 1.69971 1.18824 1.13778 1.52003 0.86598 0.83095 0.81158 0.77512 1.19751 1.21350 1.21440 1.22398 0.97017 0.91706 0.97148 1.20606 0.94241 0.96204 1.11114 1.20695 0.93323 0.97126 0.98239 0.92042 0.92308 0.92136 0.86340 0.85413 0.93731 0.91762 0.91617 0.92070 0.92453 0.91805 0.90678 0.95919 0.89202 0.92543 0.92798 0.94379 0.96315 0.96373 0.93409 0.95691 0.91205 0.86415 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.01 36.00 0.36 -0.54 16 2 C -0.15 -1.76 5.88 -104.59 -0.62 -2.37 16 3 C -0.07 -0.87 9.69 -39.62 -0.38 -1.26 16 4 C -0.19 -2.61 9.26 -39.38 -0.36 -2.97 16 5 C 0.22 2.86 6.53 -83.79 -0.55 2.31 16 6 N -0.62 -7.80 2.90 -171.90 -0.50 -8.30 16 7 C 0.09 0.95 8.86 59.85 0.53 1.48 16 8 C 0.15 2.10 2.57 -67.85 -0.17 1.93 16 9 H 0.10 1.52 5.43 -51.93 -0.28 1.24 16 10 C -0.12 -1.59 5.23 -26.61 -0.14 -1.72 16 11 C -0.11 -1.64 6.09 -26.65 -0.16 -1.80 16 12 C 0.05 0.93 4.53 -3.83 -0.02 0.91 16 13 N -0.51 -9.27 4.23 -226.69 -0.96 -10.23 16 14 C 0.09 1.78 2.28 -67.71 -0.15 1.63 16 15 H 0.07 1.41 7.97 -51.93 -0.41 0.99 16 16 C -0.18 -3.11 8.44 37.16 0.31 -2.79 16 17 C 0.03 0.75 4.35 -27.88 -0.12 0.63 16 18 C -0.49 -13.44 8.78 -34.44 -0.30 -13.74 16 19 H 0.06 1.71 7.73 -52.49 -0.41 1.31 16 20 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 21 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 22 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 C 0.05 0.73 4.52 -3.83 -0.02 0.71 16 27 C -0.20 -2.33 9.16 -39.38 -0.36 -2.69 16 28 C -0.08 -0.83 9.69 -39.61 -0.38 -1.21 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.13 1.82 5.86 -52.49 -0.31 1.51 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.58 6.47 -51.93 -0.34 0.24 16 36 H 0.07 0.66 6.70 -51.93 -0.35 0.31 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.69 7.41 -51.93 -0.38 0.31 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.36 6.57 -51.93 -0.34 0.02 16 42 H 0.09 1.77 6.20 -51.93 -0.32 1.45 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.90 6.46 -51.92 -0.34 0.57 16 45 H 0.04 0.58 6.84 -51.93 -0.36 0.22 16 46 H 0.02 0.49 6.35 -51.93 -0.33 0.16 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.03 0.37 5.65 -51.93 -0.29 0.08 16 50 H 0.07 1.16 8.01 -51.93 -0.42 0.74 16 51 H 0.12 1.18 6.32 -52.49 -0.33 0.84 16 52 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -29.70 390.13 -11.48 -41.18 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.98 Total: 1.03 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.64 Total: -20.17 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.72 Total: -44.85 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.70 -11.48 -41.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552202.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.804 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds