Wall clock time and date at job start Tue Mar 31 2020 10:53:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38278 * 119.93050 * 2 1
4 4 C 1.38105 * 120.08156 * 180.02562 * 3 2 1
5 5 C 1.38912 * 119.91956 * 359.97438 * 4 3 2
6 6 N 1.39675 * 120.07374 * 179.97438 * 5 4 3
7 7 C 1.46503 * 120.00036 * 186.22707 * 6 5 4
8 8 C 1.46502 * 119.99857 * 6.22565 * 6 5 4
9 9 H 1.08997 * 109.50510 * 6.22559 * 8 6 5
10 10 C 1.53119 * 109.50257 * 126.30495 * 8 6 5
11 11 C 1.53120 * 109.15678 * 177.55437 * 10 8 6
12 12 C 1.53042 * 109.31266 * 302.40325 * 11 10 8
13 13 N 1.46847 * 109.52287 * 59.15882 * 12 11 10
14 14 C 1.46899 * 111.00207 * 174.16134 * 13 12 11
15 15 H 1.08994 * 109.47241 * 173.54291 * 14 13 12
16 16 C 1.53000 * 109.46916 * 53.54773 * 14 13 12
17 17 C 1.52998 * 109.46954 * 293.54689 * 14 13 12
18 18 C 1.50699 * 109.47203 * 297.59507 * 17 14 13
19 19 H 1.07997 * 119.99743 * 359.97438 * 18 17 14
20 20 C 1.37873 * 120.00112 * 180.02562 * 18 17 14
21 21 N 1.31517 * 120.00192 * 0.02562 * 20 18 17
22 22 Si 1.86795 * 120.00173 * 179.97438 * 20 18 17
23 23 H 1.48502 * 109.47091 * 0.02562 * 22 20 18
24 24 H 1.48505 * 109.47090 * 119.99712 * 22 20 18
25 25 H 1.48497 * 109.47316 * 239.99899 * 22 20 18
26 26 C 1.46848 * 111.19641 * 298.26281 * 13 12 11
27 27 C 1.38912 * 119.85560 * 0.25353 * 5 4 3
28 28 C 1.38111 * 119.91745 * 359.49128 * 27 5 4
29 29 H 1.08996 * 109.46988 * 89.99714 * 1 2 3
30 30 H 1.09005 * 109.47009 * 210.00109 * 1 2 3
31 31 H 1.09000 * 109.46659 * 329.99664 * 1 2 3
32 32 H 1.07998 * 119.96094 * 0.04677 * 3 2 1
33 33 H 1.07993 * 120.04464 * 179.97438 * 4 3 2
34 34 H 1.09002 * 109.46746 * 269.99749 * 7 6 5
35 35 H 1.08998 * 109.46914 * 29.99915 * 7 6 5
36 36 H 1.08999 * 109.46958 * 149.99792 * 7 6 5
37 37 H 1.08995 * 109.52254 * 297.50075 * 10 8 6
38 38 H 1.09003 * 109.52111 * 57.69032 * 10 8 6
39 39 H 1.09007 * 109.50390 * 182.44309 * 11 10 8
40 40 H 1.09002 * 109.50341 * 62.36560 * 11 10 8
41 41 H 1.09000 * 109.46128 * 299.14038 * 12 11 10
42 42 H 1.09003 * 109.45216 * 179.16940 * 12 11 10
43 43 H 1.08993 * 109.47133 * 180.02562 * 16 14 13
44 44 H 1.09008 * 109.46874 * 299.99950 * 16 14 13
45 45 H 1.09000 * 109.47703 * 59.99867 * 16 14 13
46 46 H 1.09001 * 109.47403 * 57.59258 * 17 14 13
47 47 H 1.09000 * 109.46937 * 177.59378 * 17 14 13
48 48 H 0.96997 * 120.00635 * 180.02562 * 21 20 18
49 49 H 1.09004 * 109.45787 * 301.72276 * 26 13 12
50 50 H 1.08997 * 109.45322 * 181.75593 * 26 13 12
51 51 H 1.07996 * 120.03917 * 179.72417 * 27 5 4
52 52 H 1.08005 * 119.95679 * 180.24701 * 28 27 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1969 1.1984 0.0000
4 6 3.5780 1.2020 -0.0005
5 6 4.2740 -0.0001 -0.0005
6 7 5.6708 -0.0002 -0.0016
7 6 6.4031 -1.2616 -0.1392
8 6 6.4034 1.2611 0.1348
9 1 5.7010 2.0701 0.3353
10 6 7.4000 1.1507 1.2921
11 6 8.2036 2.4505 1.3888
12 6 8.9112 2.7084 0.0565
13 7 7.9145 2.8069 -1.0175
14 6 8.5451 3.1912 -2.2873
15 1 7.8070 3.1455 -3.0880
16 6 9.6941 2.2297 -2.5977
17 6 9.0890 4.6169 -2.1757
18 6 7.9494 5.5714 -1.9286
19 1 6.9383 5.1986 -1.8587
20 6 8.1975 6.9208 -1.7929
21 7 9.4287 7.3751 -1.8796
22 14 6.7848 8.1042 -1.4874
23 1 5.5083 7.3474 -1.4327
24 1 6.9984 8.8074 -0.1970
25 1 6.7248 9.0983 -2.5889
26 6 7.1631 1.5534 -1.1611
27 6 3.5779 -1.2023 -0.0053
28 6 2.1968 -1.1985 0.0006
29 1 -0.3633 0.0001 -1.0276
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3633 0.8900 0.5139
32 1 1.6552 2.1326 0.0008
33 1 4.1162 2.1383 -0.0010
34 1 6.5855 -1.6854 0.8483
35 1 5.8135 -1.9612 -0.7316
36 1 7.3551 -1.0765 -0.6367
37 1 6.8592 0.9859 2.2240
38 1 8.0778 0.3166 1.1108
39 1 8.9447 2.3619 2.1832
40 1 7.5305 3.2789 1.6097
41 1 9.5948 1.8867 -0.1567
42 1 9.4722 3.6410 0.1180
43 1 10.1623 2.5151 -3.5396
44 1 10.4323 2.2753 -1.7969
45 1 9.3066 1.2140 -2.6772
46 1 9.7955 4.6724 -1.3475
47 1 9.5944 4.8866 -3.1031
48 1 9.6033 8.3244 -1.7838
49 1 7.8550 0.7371 -1.3686
50 1 6.4547 1.6471 -1.9841
51 1 4.1160 -2.1386 -0.0098
52 1 1.6550 -2.1328 0.0009
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000839552202.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:53:38
Heat of formation + Delta-G solvation = 28.626195 kcal
Electronic energy + Delta-G solvation = -27455.559477 eV
Core-core repulsion = 24033.432838 eV
Total energy + Delta-G solvation = -3422.126638 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.03316 -38.81684 -36.56547 -34.18323 -32.42848 -31.69742 -31.12718 -30.05334
-29.08156 -27.46711 -27.28211 -25.06601 -24.07900 -22.81674 -22.57847 -22.17203
-20.66344 -19.31423 -18.72881 -17.31211 -16.20044 -16.03640 -15.31282 -14.97858
-14.94329 -14.43513 -14.39853 -14.11144 -14.02289 -13.77800 -13.66633 -13.50845
-13.39159 -13.04754 -12.48143 -12.34720 -12.20642 -12.08263 -12.04029 -11.97012
-11.76679 -11.48575 -11.41854 -11.16506 -11.09394 -10.75607 -10.60593 -10.51061
-10.34207 -10.26763 -10.19374 -9.92071 -9.50236 -9.16046 -8.95638 -8.86021
-8.25552 -7.49686 -7.13126 -5.88357 -3.85818 1.50756 1.63632 3.09761
3.38505 3.46255 3.51804 3.90913 4.52404 4.57931 4.81491 4.87714
4.97997 5.00288 5.11221 5.13024 5.27030 5.29017 5.37459 5.47198
5.48480 5.49306 5.53452 5.57751 5.66979 5.69546 5.73715 5.78512
5.82579 5.84823 5.90491 5.92735 5.99116 6.05791 6.06465 6.13895
6.18091 6.27931 6.39269 6.43552 6.50331 6.58155 6.62239 6.72628
6.76462 6.94934 6.97727 7.32496 7.52995 7.59003 7.68797 7.91821
8.00525 8.13124 8.58898 9.20757 9.76061 11.23732
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.012187 B = 0.003773 C = 0.003139
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2296.967245 B = 7419.774331 C = 8917.677384
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C -0.155 4.155
3 C -0.070 4.070
4 C -0.191 4.191
5 C 0.218 3.782
6 N -0.625 5.625
7 C 0.095 3.905
8 C 0.152 3.848
9 H 0.100 0.900
10 C -0.124 4.124
11 C -0.114 4.114
12 C 0.055 3.945
13 N -0.506 5.506
14 C 0.089 3.911
15 H 0.068 0.932
16 C -0.183 4.183
17 C 0.030 3.970
18 C -0.487 4.487
19 H 0.062 0.938
20 C 0.050 3.950
21 N -0.905 5.905
22 Si 0.888 3.112
23 H -0.273 1.273
24 H -0.287 1.287
25 H -0.288 1.288
26 C 0.047 3.953
27 C -0.199 4.199
28 C -0.075 4.075
29 H 0.061 0.939
30 H 0.058 0.942
31 H 0.060 0.940
32 H 0.119 0.881
33 H 0.128 0.872
34 H 0.044 0.956
35 H 0.064 0.936
36 H 0.065 0.935
37 H 0.061 0.939
38 H 0.057 0.943
39 H 0.063 0.937
40 H 0.074 0.926
41 H 0.023 0.977
42 H 0.090 0.910
43 H 0.055 0.945
44 H 0.053 0.947
45 H 0.037 0.963
46 H 0.019 0.981
47 H 0.018 0.982
48 H 0.256 0.744
49 H 0.025 0.975
50 H 0.069 0.931
51 H 0.118 0.882
52 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.319 -18.648 5.412 21.538
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.157 4.157
3 C -0.089 4.089
4 C -0.213 4.213
5 C 0.116 3.884
6 N -0.335 5.335
7 C -0.049 4.049
8 C 0.049 3.951
9 H 0.118 0.882
10 C -0.163 4.163
11 C -0.152 4.152
12 C -0.073 4.073
13 N -0.230 5.230
14 C -0.019 4.019
15 H 0.086 0.914
16 C -0.242 4.242
17 C -0.007 4.007
18 C -0.525 4.525
19 H 0.080 0.920
20 C -0.149 4.149
21 N -0.546 5.546
22 Si 0.716 3.284
23 H -0.198 1.198
24 H -0.213 1.213
25 H -0.214 1.214
26 C -0.083 4.083
27 C -0.222 4.222
28 C -0.094 4.094
29 H 0.080 0.920
30 H 0.077 0.923
31 H 0.079 0.921
32 H 0.137 0.863
33 H 0.146 0.854
34 H 0.063 0.937
35 H 0.082 0.918
36 H 0.084 0.916
37 H 0.079 0.921
38 H 0.075 0.925
39 H 0.082 0.918
40 H 0.093 0.907
41 H 0.041 0.959
42 H 0.108 0.892
43 H 0.075 0.925
44 H 0.072 0.928
45 H 0.056 0.944
46 H 0.037 0.963
47 H 0.036 0.964
48 H 0.066 0.934
49 H 0.043 0.957
50 H 0.088 0.912
51 H 0.136 0.864
52 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -9.363 -18.129 5.543 21.144
hybrid contribution 0.033 0.042 -0.109 0.121
sum -9.330 -18.087 5.434 21.064
Atomic orbital electron populations
1.20634 0.91808 1.01987 1.01578 1.19627 0.95655 0.93148 1.07224
1.20790 0.93419 0.97335 0.97372 1.20860 0.94358 0.96915 1.09177
1.17851 0.83047 0.93818 0.93652 1.46559 1.01852 1.06371 1.78703
1.21541 0.96845 0.85958 1.00525 1.21100 0.93924 0.85447 0.94673
0.88221 1.21919 0.97790 0.98513 0.98034 1.21561 0.99288 0.97054
0.97340 1.22112 0.93470 1.01140 0.90584 1.61978 1.26583 1.28232
1.06212 1.21899 0.93420 0.97202 0.89360 0.91388 1.22517 1.00711
0.99135 1.01845 1.19201 0.96374 0.88051 0.97058 1.21197 0.94010
0.90947 1.46392 0.92016 1.25000 0.95240 0.98486 0.96179 1.69971
1.18824 1.13778 1.52003 0.86598 0.83095 0.81158 0.77512 1.19751
1.21350 1.21440 1.22398 0.97017 0.91706 0.97148 1.20606 0.94241
0.96204 1.11114 1.20695 0.93323 0.97126 0.98239 0.92042 0.92308
0.92136 0.86340 0.85413 0.93731 0.91762 0.91617 0.92070 0.92453
0.91805 0.90678 0.95919 0.89202 0.92543 0.92798 0.94379 0.96315
0.96373 0.93409 0.95691 0.91205 0.86415 0.86686
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.90 10.01 36.00 0.36 -0.54 16
2 C -0.15 -1.76 5.88 -104.59 -0.62 -2.37 16
3 C -0.07 -0.87 9.69 -39.62 -0.38 -1.26 16
4 C -0.19 -2.61 9.26 -39.38 -0.36 -2.97 16
5 C 0.22 2.86 6.53 -83.79 -0.55 2.31 16
6 N -0.62 -7.80 2.90 -171.90 -0.50 -8.30 16
7 C 0.09 0.95 8.86 59.85 0.53 1.48 16
8 C 0.15 2.10 2.57 -67.85 -0.17 1.93 16
9 H 0.10 1.52 5.43 -51.93 -0.28 1.24 16
10 C -0.12 -1.59 5.23 -26.61 -0.14 -1.72 16
11 C -0.11 -1.64 6.09 -26.65 -0.16 -1.80 16
12 C 0.05 0.93 4.53 -3.83 -0.02 0.91 16
13 N -0.51 -9.27 4.23 -226.69 -0.96 -10.23 16
14 C 0.09 1.78 2.28 -67.71 -0.15 1.63 16
15 H 0.07 1.41 7.97 -51.93 -0.41 0.99 16
16 C -0.18 -3.11 8.44 37.16 0.31 -2.79 16
17 C 0.03 0.75 4.35 -27.88 -0.12 0.63 16
18 C -0.49 -13.44 8.78 -34.44 -0.30 -13.74 16
19 H 0.06 1.71 7.73 -52.49 -0.41 1.31 16
20 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16
21 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16
22 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16
23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16
24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16
26 C 0.05 0.73 4.52 -3.83 -0.02 0.71 16
27 C -0.20 -2.33 9.16 -39.38 -0.36 -2.69 16
28 C -0.08 -0.83 9.69 -39.61 -0.38 -1.21 16
29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16
31 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16
32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16
33 H 0.13 1.82 5.86 -52.49 -0.31 1.51 16
34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16
35 H 0.06 0.58 6.47 -51.93 -0.34 0.24 16
36 H 0.07 0.66 6.70 -51.93 -0.35 0.31 16
37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
38 H 0.06 0.69 7.41 -51.93 -0.38 0.31 16
39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16
40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
41 H 0.02 0.36 6.57 -51.93 -0.34 0.02 16
42 H 0.09 1.77 6.20 -51.93 -0.32 1.45 16
43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
44 H 0.05 0.90 6.46 -51.92 -0.34 0.57 16
45 H 0.04 0.58 6.84 -51.93 -0.36 0.22 16
46 H 0.02 0.49 6.35 -51.93 -0.33 0.16 16
47 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16
48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
49 H 0.03 0.37 5.65 -51.93 -0.29 0.08 16
50 H 0.07 1.16 8.01 -51.93 -0.42 0.74 16
51 H 0.12 1.18 6.32 -52.49 -0.33 0.84 16
52 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16
LS Contribution 390.13 15.07 5.88 5.88
Total: -1.00 -29.70 390.13 -11.48 -41.18
By element:
Atomic # 1 Polarization: 10.01 SS G_CDS: -8.98 Total: 1.03 kcal
Atomic # 6 Polarization: -17.53 SS G_CDS: -2.64 Total: -20.17 kcal
Atomic # 7 Polarization: -44.13 SS G_CDS: -0.72 Total: -44.85 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -29.70 -11.48 -41.18 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000839552202.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.804 kcal
(2) G-P(sol) polarization free energy of solvation -29.695 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.108 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.482 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.626 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds