Wall clock time and date at job start Tue Mar 31 2020 10:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38278 * 119.93050 * 2 1 4 4 C 1.38105 * 120.08156 * 180.02562 * 3 2 1 5 5 C 1.38912 * 119.91956 * 359.97438 * 4 3 2 6 6 N 1.39675 * 120.07374 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00036 * 186.22707 * 6 5 4 8 8 C 1.46502 * 119.99857 * 6.22565 * 6 5 4 9 9 H 1.08997 * 109.50510 * 6.22559 * 8 6 5 10 10 C 1.53119 * 109.50257 * 126.30495 * 8 6 5 11 11 C 1.53120 * 109.15678 * 177.55437 * 10 8 6 12 12 C 1.53042 * 109.31266 * 302.40325 * 11 10 8 13 13 N 1.46847 * 109.52287 * 59.15882 * 12 11 10 14 14 C 1.46899 * 111.00207 * 174.16134 * 13 12 11 15 15 H 1.08994 * 109.47241 * 173.54291 * 14 13 12 16 16 C 1.53000 * 109.46916 * 53.54773 * 14 13 12 17 17 C 1.52998 * 109.46954 * 293.54689 * 14 13 12 18 18 C 1.50699 * 109.47203 * 297.59507 * 17 14 13 19 19 H 1.07997 * 119.99743 * 359.97438 * 18 17 14 20 20 C 1.37873 * 120.00112 * 180.02562 * 18 17 14 21 21 N 1.31517 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00173 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47091 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47090 * 119.99712 * 22 20 18 25 25 H 1.48497 * 109.47316 * 239.99899 * 22 20 18 26 26 C 1.46848 * 111.19641 * 298.26281 * 13 12 11 27 27 C 1.38912 * 119.85560 * 0.25353 * 5 4 3 28 28 C 1.38111 * 119.91745 * 359.49128 * 27 5 4 29 29 H 1.08996 * 109.46988 * 89.99714 * 1 2 3 30 30 H 1.09005 * 109.47009 * 210.00109 * 1 2 3 31 31 H 1.09000 * 109.46659 * 329.99664 * 1 2 3 32 32 H 1.07998 * 119.96094 * 0.04677 * 3 2 1 33 33 H 1.07993 * 120.04464 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.46746 * 269.99749 * 7 6 5 35 35 H 1.08998 * 109.46914 * 29.99915 * 7 6 5 36 36 H 1.08999 * 109.46958 * 149.99792 * 7 6 5 37 37 H 1.08995 * 109.52254 * 297.50075 * 10 8 6 38 38 H 1.09003 * 109.52111 * 57.69032 * 10 8 6 39 39 H 1.09007 * 109.50390 * 182.44309 * 11 10 8 40 40 H 1.09002 * 109.50341 * 62.36560 * 11 10 8 41 41 H 1.09000 * 109.46128 * 299.14038 * 12 11 10 42 42 H 1.09003 * 109.45216 * 179.16940 * 12 11 10 43 43 H 1.08993 * 109.47133 * 180.02562 * 16 14 13 44 44 H 1.09008 * 109.46874 * 299.99950 * 16 14 13 45 45 H 1.09000 * 109.47703 * 59.99867 * 16 14 13 46 46 H 1.09001 * 109.47403 * 57.59258 * 17 14 13 47 47 H 1.09000 * 109.46937 * 177.59378 * 17 14 13 48 48 H 0.96997 * 120.00635 * 180.02562 * 21 20 18 49 49 H 1.09004 * 109.45787 * 301.72276 * 26 13 12 50 50 H 1.08997 * 109.45322 * 181.75593 * 26 13 12 51 51 H 1.07996 * 120.03917 * 179.72417 * 27 5 4 52 52 H 1.08005 * 119.95679 * 180.24701 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2020 -0.0005 5 6 4.2740 -0.0001 -0.0005 6 7 5.6708 -0.0002 -0.0016 7 6 6.4031 -1.2616 -0.1392 8 6 6.4034 1.2611 0.1348 9 1 5.7010 2.0701 0.3353 10 6 7.4000 1.1507 1.2921 11 6 8.2036 2.4505 1.3888 12 6 8.9112 2.7084 0.0565 13 7 7.9145 2.8069 -1.0175 14 6 8.5451 3.1912 -2.2873 15 1 7.8070 3.1455 -3.0880 16 6 9.6941 2.2297 -2.5977 17 6 9.0890 4.6169 -2.1757 18 6 7.9494 5.5714 -1.9286 19 1 6.9383 5.1986 -1.8587 20 6 8.1975 6.9208 -1.7929 21 7 9.4287 7.3751 -1.8796 22 14 6.7848 8.1042 -1.4874 23 1 5.5083 7.3474 -1.4327 24 1 6.9984 8.8074 -0.1970 25 1 6.7248 9.0983 -2.5889 26 6 7.1631 1.5534 -1.1611 27 6 3.5779 -1.2023 -0.0053 28 6 2.1968 -1.1985 0.0006 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6552 2.1326 0.0008 33 1 4.1162 2.1383 -0.0010 34 1 6.5855 -1.6854 0.8483 35 1 5.8135 -1.9612 -0.7316 36 1 7.3551 -1.0765 -0.6367 37 1 6.8592 0.9859 2.2240 38 1 8.0778 0.3166 1.1108 39 1 8.9447 2.3619 2.1832 40 1 7.5305 3.2789 1.6097 41 1 9.5948 1.8867 -0.1567 42 1 9.4722 3.6410 0.1180 43 1 10.1623 2.5151 -3.5396 44 1 10.4323 2.2753 -1.7969 45 1 9.3066 1.2140 -2.6772 46 1 9.7955 4.6724 -1.3475 47 1 9.5944 4.8866 -3.1031 48 1 9.6033 8.3244 -1.7838 49 1 7.8550 0.7371 -1.3686 50 1 6.4547 1.6471 -1.9841 51 1 4.1160 -2.1386 -0.0098 52 1 1.6550 -2.1328 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839552202.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:38 Heat of formation + Delta-G solvation = 14.099147 kcal Electronic energy + Delta-G solvation = -27456.189417 eV Core-core repulsion = 24033.432838 eV Total energy + Delta-G solvation = -3422.756579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09790 -39.97855 -37.70377 -35.60332 -34.36139 -32.61619 -32.06828 -31.49657 -30.25851 -29.14922 -28.24755 -26.02766 -25.63454 -24.46106 -23.74115 -23.20065 -21.74562 -20.51217 -20.09320 -18.37564 -18.26726 -17.29030 -16.57315 -16.40255 -16.01579 -15.91539 -15.46218 -15.35874 -15.15974 -14.80737 -14.74530 -14.52915 -14.40552 -14.26114 -13.97456 -13.75004 -13.47808 -13.35811 -13.11508 -12.97502 -12.89197 -12.84883 -12.76300 -12.60406 -12.46697 -12.36771 -12.14100 -11.87864 -11.73097 -11.54734 -11.43217 -11.37027 -11.07858 -10.98901 -10.47821 -10.41527 -9.77785 -8.91453 -8.09964 -8.05944 -6.13856 0.58877 0.72882 1.39756 1.41281 1.54058 2.13095 2.47122 2.99362 3.15650 3.28373 3.76207 3.87404 3.95466 4.09882 4.13542 4.15596 4.19853 4.28039 4.35312 4.39130 4.43015 4.51415 4.55100 4.61371 4.62168 4.69137 4.70358 4.74364 4.83909 4.88550 4.90791 4.92919 4.94135 4.98652 5.08081 5.09305 5.18824 5.20085 5.22111 5.26430 5.29961 5.44209 5.46167 5.51852 5.60925 5.70242 5.88133 5.90324 6.07505 6.31431 6.34786 6.49701 6.54287 6.66477 7.00002 7.51864 9.02336 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012187 B = 0.003773 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.967245 B = 7419.774331 C = 8917.677384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.160 4.160 3 C -0.085 4.085 4 C -0.214 4.214 5 C 0.203 3.797 6 N -0.627 5.627 7 C 0.091 3.909 8 C 0.159 3.841 9 H 0.079 0.921 10 C -0.112 4.112 11 C -0.109 4.109 12 C 0.059 3.941 13 N -0.528 5.528 14 C 0.097 3.903 15 H 0.057 0.943 16 C -0.172 4.172 17 C 0.037 3.963 18 C -0.494 4.494 19 H 0.055 0.945 20 C -0.003 4.003 21 N -0.940 5.940 22 Si 0.952 3.048 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.057 3.943 27 C -0.200 4.200 28 C -0.077 4.077 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.040 0.960 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.062 0.938 46 H -0.001 1.001 47 H -0.009 1.009 48 H 0.258 0.742 49 H 0.040 0.960 50 H 0.053 0.947 51 H 0.138 0.862 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 -21.312 6.202 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.162 4.162 3 C -0.104 4.104 4 C -0.237 4.237 5 C 0.101 3.899 6 N -0.337 5.337 7 C -0.051 4.051 8 C 0.055 3.945 9 H 0.097 0.903 10 C -0.150 4.150 11 C -0.147 4.147 12 C -0.069 4.069 13 N -0.252 5.252 14 C -0.011 4.011 15 H 0.075 0.925 16 C -0.231 4.231 17 C 0.000 4.000 18 C -0.533 4.533 19 H 0.073 0.927 20 C -0.199 4.199 21 N -0.582 5.582 22 Si 0.778 3.222 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.072 4.072 27 C -0.222 4.222 28 C -0.096 4.096 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.142 0.858 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.018 0.982 47 H 0.009 0.991 48 H 0.067 0.933 49 H 0.058 0.942 50 H 0.072 0.928 51 H 0.155 0.845 52 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.761 -20.817 6.334 24.275 hybrid contribution 0.428 0.857 -0.373 1.028 sum -10.333 -19.960 5.961 23.253 Atomic orbital electron populations 1.20672 0.89938 1.02980 1.02276 1.19977 0.97150 0.92848 1.06229 1.20976 0.93178 0.98386 0.97813 1.20878 0.95084 0.96771 1.10942 1.18018 0.83405 0.94137 0.94327 1.46541 1.01734 1.06491 1.78961 1.21706 0.96817 0.84978 1.01591 1.20865 0.93625 0.85951 0.94097 0.90345 1.21814 0.97472 0.97860 0.97888 1.21517 0.99449 0.97381 0.96376 1.22040 0.93468 0.99875 0.91475 1.61835 1.27223 1.30507 1.05632 1.21574 0.94208 0.95143 0.90198 0.92462 1.22365 0.99398 0.99455 1.01845 1.19043 0.95168 0.91083 0.94685 1.21473 0.94384 0.91729 1.45671 0.92652 1.25795 0.97629 1.00330 0.96146 1.70089 1.20755 1.14192 1.53178 0.85585 0.80137 0.78932 0.77503 1.19195 1.20833 1.20840 1.22320 0.96577 0.90583 0.97737 1.20870 0.94711 0.96311 1.10300 1.21065 0.93331 0.98077 0.97116 0.91398 0.90734 0.91793 0.85846 0.87233 0.92391 0.90546 0.91398 0.91135 0.90762 0.89658 0.92716 0.94237 0.92809 0.92499 0.92654 0.91891 0.98245 0.99082 0.93302 0.94205 0.92819 0.84451 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 10.01 71.24 0.71 -0.84 16 2 C -0.16 -3.38 5.88 -19.84 -0.12 -3.49 16 3 C -0.08 -2.10 9.69 22.25 0.22 -1.88 16 4 C -0.21 -5.95 9.26 22.40 0.21 -5.74 16 5 C 0.20 5.11 6.53 38.21 0.25 5.36 16 6 N -0.63 -14.67 2.90 -697.77 -2.02 -16.70 16 7 C 0.09 1.56 8.86 127.77 1.13 2.69 16 8 C 0.16 4.30 2.57 45.04 0.12 4.41 16 9 H 0.08 2.48 5.43 -2.39 -0.01 2.46 16 10 C -0.11 -2.65 5.23 30.67 0.16 -2.49 16 11 C -0.11 -3.04 6.09 30.65 0.19 -2.86 16 12 C 0.06 2.00 4.53 86.33 0.39 2.39 16 13 N -0.53 -19.59 4.23 -871.11 -3.69 -23.28 16 14 C 0.10 3.97 2.28 44.92 0.10 4.07 16 15 H 0.06 2.43 7.97 -2.39 -0.02 2.42 16 16 C -0.17 -5.70 8.44 71.98 0.61 -5.10 16 17 C 0.04 1.95 4.35 29.85 0.13 2.08 16 18 C -0.49 -28.22 8.78 25.60 0.22 -28.00 16 19 H 0.06 3.17 7.73 -2.91 -0.02 3.15 16 20 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 21 N -0.94 -57.82 13.29 21.45 0.28 -57.53 16 22 Si 0.95 46.02 29.54 68.60 2.03 48.04 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 26 C 0.06 1.73 4.52 86.33 0.39 2.12 16 27 C -0.20 -4.20 9.16 22.40 0.21 -3.99 16 28 C -0.08 -1.51 9.69 22.25 0.22 -1.29 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.90 8.08 -2.38 -0.02 0.88 16 31 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 32 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.11 3.34 5.86 -2.91 -0.02 3.32 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.12 6.47 -2.39 -0.02 1.11 16 36 H 0.07 1.13 6.70 -2.39 -0.02 1.12 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.54 7.41 -2.39 -0.02 1.53 16 39 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.04 1.20 6.57 -2.39 -0.02 1.18 16 42 H 0.05 2.20 6.20 -2.39 -0.01 2.19 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 1.81 6.46 -2.38 -0.02 1.80 16 45 H 0.06 1.78 6.84 -2.39 -0.02 1.76 16 46 H 0.00 -0.04 6.35 -2.39 -0.02 -0.05 16 47 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 48 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 49 H 0.04 1.10 5.65 -2.38 -0.01 1.08 16 50 H 0.05 1.79 8.01 -2.39 -0.02 1.78 16 51 H 0.14 2.27 6.32 -2.91 -0.02 2.25 16 52 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -65.78 390.13 3.07 -62.71 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.88 Total: 19.02 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 5.59 Total: -32.27 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -5.43 Total: -97.51 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -65.78 3.07 -62.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552202.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.813 kcal (2) G-P(sol) polarization free energy of solvation -65.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds