Wall clock time and date at job start Tue Mar 31 2020 10:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38285 * 119.92179 * 2 1 4 4 C 1.38104 * 120.07107 * 180.02562 * 3 2 1 5 5 C 1.38909 * 119.92769 * 0.02562 * 4 3 2 6 6 N 1.39674 * 120.07918 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00231 * 173.73874 * 6 5 4 8 8 C 1.46506 * 119.99695 * 353.74347 * 6 5 4 9 9 H 1.09000 * 109.53349 * 354.58276 * 8 6 5 10 10 C 1.53119 * 109.50092 * 234.48484 * 8 6 5 11 11 C 1.53119 * 109.16063 * 182.40266 * 10 8 6 12 12 C 1.53036 * 109.27578 * 57.65495 * 11 10 8 13 13 N 1.46846 * 109.51780 * 300.81479 * 12 11 10 14 14 C 1.46903 * 110.99270 * 185.84960 * 13 12 11 15 15 H 1.09002 * 109.47207 * 184.22914 * 14 13 12 16 16 C 1.53001 * 109.46995 * 304.22776 * 14 13 12 17 17 C 1.52998 * 109.47144 * 64.22670 * 14 13 12 18 18 C 1.50701 * 109.46747 * 62.83952 * 17 14 13 19 19 H 1.08002 * 120.00553 * 359.97438 * 18 17 14 20 20 C 1.37885 * 119.99678 * 180.02562 * 18 17 14 21 21 N 1.31515 * 119.99763 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47175 * 59.99879 * 22 20 18 24 24 H 1.48502 * 109.47290 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47227 * 299.99501 * 22 20 18 26 26 C 1.46850 * 111.19652 * 61.75799 * 13 12 11 27 27 C 1.38913 * 119.84794 * 0.24546 * 5 4 3 28 28 C 1.38109 * 119.92527 * 359.50026 * 27 5 4 29 29 H 1.08999 * 109.46956 * 89.99882 * 1 2 3 30 30 H 1.09002 * 109.46887 * 210.00000 * 1 2 3 31 31 H 1.09003 * 109.46745 * 330.00163 * 1 2 3 32 32 H 1.08001 * 119.96717 * 0.04192 * 3 2 1 33 33 H 1.07997 * 120.03637 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.47047 * 270.00225 * 7 6 5 35 35 H 1.08994 * 109.46955 * 30.00047 * 7 6 5 36 36 H 1.09000 * 109.47282 * 150.00152 * 7 6 5 37 37 H 1.08995 * 109.52157 * 302.31315 * 10 8 6 38 38 H 1.09004 * 109.51770 * 62.49684 * 10 8 6 39 39 H 1.09001 * 109.50393 * 177.59942 * 11 10 8 40 40 H 1.09004 * 109.50335 * 297.67915 * 11 10 8 41 41 H 1.09005 * 109.46036 * 60.83893 * 12 11 10 42 42 H 1.09006 * 109.45913 * 180.80420 * 12 11 10 43 43 H 1.09002 * 109.47030 * 60.00030 * 16 14 13 44 44 H 1.09001 * 109.46704 * 179.97438 * 16 14 13 45 45 H 1.09004 * 109.47174 * 299.99657 * 16 14 13 46 46 H 1.08997 * 109.47050 * 182.83932 * 17 14 13 47 47 H 1.09002 * 109.47123 * 302.84625 * 17 14 13 48 48 H 0.97008 * 119.99839 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.46092 * 178.22798 * 26 13 12 50 50 H 1.09008 * 109.46195 * 58.25127 * 26 13 12 51 51 H 1.08007 * 120.03737 * 179.72513 * 27 5 4 52 52 H 1.07995 * 119.95972 * 180.24927 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 -0.0005 5 6 4.2741 0.0001 -0.0016 6 7 5.6708 0.0000 -0.0027 7 6 6.4034 -1.2612 0.1345 8 6 6.4032 1.2613 -0.1410 9 1 5.6996 2.0729 -0.3266 10 6 7.3840 1.1571 -1.3122 11 6 8.1873 2.4568 -1.4122 12 6 8.9137 2.7049 -0.0883 13 7 7.9322 2.7976 1.0000 14 6 8.5811 3.1729 2.2634 15 1 7.8451 3.1613 3.0674 16 6 9.6972 2.1753 2.5794 17 6 9.1738 4.5775 2.1348 18 6 8.0658 5.5699 1.8927 19 1 7.0414 5.2326 1.8358 20 6 8.3601 6.9086 1.7427 21 7 9.6076 7.3194 1.8115 22 14 6.9867 8.1389 1.4433 23 1 6.0356 8.1062 2.5833 24 1 7.5620 9.5023 1.3183 25 1 6.2708 7.7866 0.1910 26 6 7.1813 1.5440 1.1461 27 6 3.5779 -1.2020 -0.0073 28 6 2.1969 -1.1985 -0.0014 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6550 2.1328 0.0007 33 1 4.1160 2.1385 -0.0001 34 1 6.5858 -1.4624 1.1902 35 1 5.8140 -2.0721 -0.2933 36 1 7.3554 -1.1874 -0.3911 37 1 8.0631 0.3210 -1.1453 38 1 6.8304 0.9988 -2.2378 39 1 8.9170 2.3726 -2.2175 40 1 7.5118 3.2871 -1.6184 41 1 9.5992 1.8808 0.1098 42 1 9.4752 3.6371 -0.1513 43 1 10.4332 2.1869 1.7755 44 1 10.1790 2.4540 3.5166 45 1 9.2750 1.1746 2.6711 46 1 9.6986 4.8360 3.0544 47 1 9.8725 4.6018 1.2985 48 1 9.8146 8.2613 1.7063 49 1 6.4847 1.6330 1.9796 50 1 7.8751 0.7255 1.3383 51 1 4.1161 -2.1384 -0.0126 52 1 1.6551 -2.1327 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839552204.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:41 Heat of formation + Delta-G solvation = 30.851048 kcal Electronic energy + Delta-G solvation = -27445.761621 eV Core-core repulsion = 24023.731460 eV Total energy + Delta-G solvation = -3422.030162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.03979 -38.81907 -36.57400 -34.18095 -32.43166 -31.69259 -31.14338 -30.04930 -29.07270 -27.48217 -27.27564 -25.07974 -24.06994 -22.82224 -22.57414 -22.17351 -20.67355 -19.31632 -18.71726 -17.32741 -16.20008 -16.03930 -15.32768 -15.04010 -14.82882 -14.43253 -14.40481 -14.15834 -14.05626 -13.79357 -13.67913 -13.55153 -13.35803 -13.05528 -12.44774 -12.31940 -12.20927 -12.12865 -12.03891 -11.94938 -11.76123 -11.46796 -11.39876 -11.18183 -11.07830 -10.71882 -10.59925 -10.53348 -10.33858 -10.28413 -10.17113 -9.90437 -9.49569 -9.15184 -8.98150 -8.86716 -8.24835 -7.49508 -7.13141 -5.88295 -3.85953 1.50240 1.63197 3.09494 3.41539 3.45254 3.48949 3.90382 4.52984 4.57843 4.81194 4.83217 4.97582 4.99939 5.09312 5.14607 5.27152 5.30326 5.38117 5.44914 5.48403 5.50269 5.53707 5.56736 5.65745 5.68591 5.75137 5.81544 5.83108 5.85419 5.90926 5.92484 6.00368 6.05997 6.06411 6.14118 6.18550 6.28154 6.38742 6.44255 6.50171 6.58695 6.63193 6.74226 6.76007 6.94403 6.97548 7.32239 7.53118 7.58778 7.69247 7.92148 8.00700 8.13096 8.58618 9.20032 9.75794 11.23680 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.003714 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.572386 B = 7536.984208 C = 8982.872227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.155 4.155 3 C -0.070 4.070 4 C -0.192 4.192 5 C 0.219 3.781 6 N -0.625 5.625 7 C 0.091 3.909 8 C 0.152 3.848 9 H 0.100 0.900 10 C -0.126 4.126 11 C -0.114 4.114 12 C 0.054 3.946 13 N -0.507 5.507 14 C 0.089 3.911 15 H 0.068 0.932 16 C -0.183 4.183 17 C 0.030 3.970 18 C -0.489 4.489 19 H 0.061 0.939 20 C 0.051 3.949 21 N -0.905 5.905 22 Si 0.889 3.111 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.047 3.953 27 C -0.200 4.200 28 C -0.075 4.075 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.022 0.978 42 H 0.091 0.909 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.038 0.962 46 H 0.018 0.982 47 H 0.019 0.981 48 H 0.258 0.742 49 H 0.069 0.931 50 H 0.026 0.974 51 H 0.119 0.881 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 -18.520 -5.510 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.157 4.157 3 C -0.089 4.089 4 C -0.214 4.214 5 C 0.117 3.883 6 N -0.335 5.335 7 C -0.052 4.052 8 C 0.049 3.951 9 H 0.118 0.882 10 C -0.164 4.164 11 C -0.152 4.152 12 C -0.074 4.074 13 N -0.231 5.231 14 C -0.019 4.019 15 H 0.086 0.914 16 C -0.242 4.242 17 C -0.007 4.007 18 C -0.528 4.528 19 H 0.079 0.921 20 C -0.148 4.148 21 N -0.546 5.546 22 Si 0.718 3.282 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.082 4.082 27 C -0.223 4.223 28 C -0.093 4.093 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.036 0.964 47 H 0.037 0.963 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.044 0.956 51 H 0.137 0.863 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.799 -17.994 -5.636 21.250 hybrid contribution 0.031 0.044 0.111 0.124 sum -9.768 -17.951 -5.525 21.170 Atomic orbital electron populations 1.20636 0.91808 1.02054 1.01508 1.19628 0.95656 0.93150 1.07258 1.20792 0.93413 0.97331 0.97354 1.20856 0.94353 0.96909 1.09248 1.17844 0.83055 0.93822 0.93571 1.46543 1.01848 1.06384 1.78703 1.21592 0.96847 0.86009 1.00760 1.21105 0.93924 0.85473 0.94642 0.88219 1.21944 0.97982 0.98571 0.97953 1.21554 0.99245 0.97012 0.97388 1.22121 0.93567 1.01247 0.90429 1.61984 1.26814 1.28449 1.05806 1.21899 0.93572 0.96898 0.89523 0.91357 1.22517 1.00703 0.99207 1.01803 1.19204 0.96088 0.88311 0.97066 1.21128 0.93817 0.91099 1.46757 0.92122 1.24999 0.95154 0.98547 0.96133 1.69955 1.17475 1.15357 1.51778 0.86707 0.82476 0.80318 0.78737 1.20507 1.21694 1.20357 1.22388 0.96909 0.91767 0.97159 1.20626 0.94244 0.96267 1.11155 1.20690 0.93317 0.97130 0.98199 0.92098 0.92288 0.92106 0.86339 0.85427 0.93680 0.91665 0.91467 0.92341 0.92043 0.91799 0.90681 0.95961 0.89044 0.92860 0.92551 0.94318 0.96376 0.96277 0.93284 0.91264 0.95637 0.86334 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.15 -1.75 5.88 -104.59 -0.62 -2.37 16 3 C -0.07 -0.86 9.69 -39.61 -0.38 -1.25 16 4 C -0.19 -2.60 9.26 -39.38 -0.36 -2.96 16 5 C 0.22 2.86 6.53 -83.79 -0.55 2.32 16 6 N -0.62 -7.79 2.90 -171.90 -0.50 -8.29 16 7 C 0.09 0.92 9.58 59.85 0.57 1.49 16 8 C 0.15 2.10 2.59 -67.85 -0.18 1.93 16 9 H 0.10 1.52 5.42 -51.93 -0.28 1.24 16 10 C -0.13 -1.61 5.20 -26.61 -0.14 -1.74 16 11 C -0.11 -1.64 6.09 -26.65 -0.16 -1.80 16 12 C 0.05 0.92 4.58 -3.83 -0.02 0.90 16 13 N -0.51 -9.31 4.27 -226.68 -0.97 -10.27 16 14 C 0.09 1.78 2.29 -67.71 -0.15 1.63 16 15 H 0.07 1.42 8.02 -51.93 -0.42 1.00 16 16 C -0.18 -3.13 8.47 37.16 0.31 -2.81 16 17 C 0.03 0.76 4.31 -27.88 -0.12 0.64 16 18 C -0.49 -13.52 8.78 -34.44 -0.30 -13.82 16 19 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 20 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 21 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 22 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.05 0.74 4.47 -3.83 -0.02 0.72 16 27 C -0.20 -2.34 9.26 -39.38 -0.36 -2.70 16 28 C -0.07 -0.82 9.69 -39.61 -0.38 -1.20 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.13 1.80 5.85 -52.49 -0.31 1.49 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.56 5.97 -51.93 -0.31 0.25 16 36 H 0.07 0.64 6.11 -51.93 -0.32 0.32 16 37 H 0.06 0.70 6.41 -51.93 -0.33 0.37 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.36 6.59 -51.93 -0.34 0.02 16 42 H 0.09 1.82 6.09 -51.93 -0.32 1.50 16 43 H 0.05 0.90 6.47 -51.93 -0.34 0.56 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.04 0.59 6.76 -51.93 -0.35 0.24 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.50 6.25 -51.93 -0.32 0.18 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.07 1.15 8.03 -51.93 -0.42 0.74 16 50 H 0.03 0.38 6.47 -51.92 -0.34 0.05 16 51 H 0.12 1.18 6.02 -52.48 -0.32 0.86 16 52 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 389.25 15.07 5.87 5.87 Total: -1.00 -29.65 389.25 -11.37 -41.02 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.89 Total: 1.27 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -2.60 Total: -20.21 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.73 Total: -44.88 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.65 -11.37 -41.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552204.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.870 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds