Wall clock time and date at job start Tue Mar 31 2020 10:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38285 * 119.92179 * 2 1 4 4 C 1.38104 * 120.07107 * 180.02562 * 3 2 1 5 5 C 1.38909 * 119.92769 * 0.02562 * 4 3 2 6 6 N 1.39674 * 120.07918 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00231 * 173.73874 * 6 5 4 8 8 C 1.46506 * 119.99695 * 353.74347 * 6 5 4 9 9 H 1.09000 * 109.53349 * 354.58276 * 8 6 5 10 10 C 1.53119 * 109.50092 * 234.48484 * 8 6 5 11 11 C 1.53119 * 109.16063 * 182.40266 * 10 8 6 12 12 C 1.53036 * 109.27578 * 57.65495 * 11 10 8 13 13 N 1.46846 * 109.51780 * 300.81479 * 12 11 10 14 14 C 1.46903 * 110.99270 * 185.84960 * 13 12 11 15 15 H 1.09002 * 109.47207 * 184.22914 * 14 13 12 16 16 C 1.53001 * 109.46995 * 304.22776 * 14 13 12 17 17 C 1.52998 * 109.47144 * 64.22670 * 14 13 12 18 18 C 1.50701 * 109.46747 * 62.83952 * 17 14 13 19 19 H 1.08002 * 120.00553 * 359.97438 * 18 17 14 20 20 C 1.37885 * 119.99678 * 180.02562 * 18 17 14 21 21 N 1.31515 * 119.99763 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47175 * 59.99879 * 22 20 18 24 24 H 1.48502 * 109.47290 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47227 * 299.99501 * 22 20 18 26 26 C 1.46850 * 111.19652 * 61.75799 * 13 12 11 27 27 C 1.38913 * 119.84794 * 0.24546 * 5 4 3 28 28 C 1.38109 * 119.92527 * 359.50026 * 27 5 4 29 29 H 1.08999 * 109.46956 * 89.99882 * 1 2 3 30 30 H 1.09002 * 109.46887 * 210.00000 * 1 2 3 31 31 H 1.09003 * 109.46745 * 330.00163 * 1 2 3 32 32 H 1.08001 * 119.96717 * 0.04192 * 3 2 1 33 33 H 1.07997 * 120.03637 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.47047 * 270.00225 * 7 6 5 35 35 H 1.08994 * 109.46955 * 30.00047 * 7 6 5 36 36 H 1.09000 * 109.47282 * 150.00152 * 7 6 5 37 37 H 1.08995 * 109.52157 * 302.31315 * 10 8 6 38 38 H 1.09004 * 109.51770 * 62.49684 * 10 8 6 39 39 H 1.09001 * 109.50393 * 177.59942 * 11 10 8 40 40 H 1.09004 * 109.50335 * 297.67915 * 11 10 8 41 41 H 1.09005 * 109.46036 * 60.83893 * 12 11 10 42 42 H 1.09006 * 109.45913 * 180.80420 * 12 11 10 43 43 H 1.09002 * 109.47030 * 60.00030 * 16 14 13 44 44 H 1.09001 * 109.46704 * 179.97438 * 16 14 13 45 45 H 1.09004 * 109.47174 * 299.99657 * 16 14 13 46 46 H 1.08997 * 109.47050 * 182.83932 * 17 14 13 47 47 H 1.09002 * 109.47123 * 302.84625 * 17 14 13 48 48 H 0.97008 * 119.99839 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.46092 * 178.22798 * 26 13 12 50 50 H 1.09008 * 109.46195 * 58.25127 * 26 13 12 51 51 H 1.08007 * 120.03737 * 179.72513 * 27 5 4 52 52 H 1.07995 * 119.95972 * 180.24927 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 -0.0005 5 6 4.2741 0.0001 -0.0016 6 7 5.6708 0.0000 -0.0027 7 6 6.4034 -1.2612 0.1345 8 6 6.4032 1.2613 -0.1410 9 1 5.6996 2.0729 -0.3266 10 6 7.3840 1.1571 -1.3122 11 6 8.1873 2.4568 -1.4122 12 6 8.9137 2.7049 -0.0883 13 7 7.9322 2.7976 1.0000 14 6 8.5811 3.1729 2.2634 15 1 7.8451 3.1613 3.0674 16 6 9.6972 2.1753 2.5794 17 6 9.1738 4.5775 2.1348 18 6 8.0658 5.5699 1.8927 19 1 7.0414 5.2326 1.8358 20 6 8.3601 6.9086 1.7427 21 7 9.6076 7.3194 1.8115 22 14 6.9867 8.1389 1.4433 23 1 6.0356 8.1062 2.5833 24 1 7.5620 9.5023 1.3183 25 1 6.2708 7.7866 0.1910 26 6 7.1813 1.5440 1.1461 27 6 3.5779 -1.2020 -0.0073 28 6 2.1969 -1.1985 -0.0014 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6550 2.1328 0.0007 33 1 4.1160 2.1385 -0.0001 34 1 6.5858 -1.4624 1.1902 35 1 5.8140 -2.0721 -0.2933 36 1 7.3554 -1.1874 -0.3911 37 1 8.0631 0.3210 -1.1453 38 1 6.8304 0.9988 -2.2378 39 1 8.9170 2.3726 -2.2175 40 1 7.5118 3.2871 -1.6184 41 1 9.5992 1.8808 0.1098 42 1 9.4752 3.6371 -0.1513 43 1 10.4332 2.1869 1.7755 44 1 10.1790 2.4540 3.5166 45 1 9.2750 1.1746 2.6711 46 1 9.6986 4.8360 3.0544 47 1 9.8725 4.6018 1.2985 48 1 9.8146 8.2613 1.7063 49 1 6.4847 1.6330 1.9796 50 1 7.8751 0.7255 1.3383 51 1 4.1161 -2.1384 -0.0126 52 1 1.6551 -2.1327 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839552204.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:40 Heat of formation + Delta-G solvation = 16.321378 kcal Electronic energy + Delta-G solvation = -27446.391675 eV Core-core repulsion = 24023.731460 eV Total energy + Delta-G solvation = -3422.660215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.10303 -39.98277 -37.71303 -35.59901 -34.36485 -32.61033 -32.08198 -31.49717 -30.24910 -29.15354 -28.25385 -26.04039 -25.63408 -24.44567 -23.75800 -23.19771 -21.75411 -20.50987 -20.08842 -18.37779 -18.27066 -17.29612 -16.57545 -16.42152 -16.02983 -15.84929 -15.47071 -15.36891 -15.21460 -14.81145 -14.73594 -14.59473 -14.43077 -14.21987 -13.97547 -13.73939 -13.45600 -13.36539 -13.10612 -13.01404 -12.89573 -12.82270 -12.73405 -12.58263 -12.45195 -12.40145 -12.15149 -11.88186 -11.67362 -11.55136 -11.40378 -11.38501 -11.09753 -10.97918 -10.46772 -10.41318 -9.77906 -8.92228 -8.09799 -8.05729 -6.13965 0.58932 0.72892 1.41276 1.43369 1.50965 2.12914 2.47225 2.99416 3.15765 3.28442 3.76331 3.86740 3.93590 4.08556 4.13845 4.15520 4.20491 4.30608 4.34267 4.36776 4.45149 4.51077 4.54148 4.60585 4.62439 4.65985 4.69576 4.76640 4.82216 4.89601 4.92730 4.93992 4.94575 4.97539 5.08511 5.10291 5.18860 5.19882 5.22494 5.26276 5.29673 5.44401 5.46023 5.51749 5.61190 5.70169 5.88198 5.90090 6.07349 6.31295 6.34654 6.49203 6.54355 6.66583 6.99358 7.51648 9.02064 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.003714 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.572386 B = 7536.984208 C = 8982.872227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.160 4.160 3 C -0.084 4.084 4 C -0.215 4.215 5 C 0.203 3.797 6 N -0.627 5.627 7 C 0.087 3.913 8 C 0.159 3.841 9 H 0.079 0.921 10 C -0.114 4.114 11 C -0.108 4.108 12 C 0.059 3.941 13 N -0.527 5.527 14 C 0.097 3.903 15 H 0.057 0.943 16 C -0.172 4.172 17 C 0.038 3.962 18 C -0.498 4.498 19 H 0.055 0.945 20 C -0.002 4.002 21 N -0.939 5.939 22 Si 0.952 3.048 23 H -0.272 1.272 24 H -0.287 1.287 25 H -0.272 1.272 26 C 0.058 3.942 27 C -0.201 4.201 28 C -0.077 4.077 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.039 0.961 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.062 0.938 46 H -0.009 1.009 47 H 0.000 1.000 48 H 0.259 0.741 49 H 0.053 0.947 50 H 0.039 0.961 51 H 0.139 0.861 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.235 -21.135 -6.338 24.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.162 4.162 3 C -0.103 4.103 4 C -0.237 4.237 5 C 0.101 3.899 6 N -0.337 5.337 7 C -0.055 4.055 8 C 0.055 3.945 9 H 0.097 0.903 10 C -0.152 4.152 11 C -0.147 4.147 12 C -0.069 4.069 13 N -0.252 5.252 14 C -0.011 4.011 15 H 0.075 0.925 16 C -0.231 4.231 17 C 0.000 4.000 18 C -0.536 4.536 19 H 0.073 0.927 20 C -0.198 4.198 21 N -0.582 5.582 22 Si 0.778 3.222 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.072 4.072 27 C -0.223 4.223 28 C -0.096 4.096 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.142 0.858 33 H 0.128 0.872 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.009 0.991 47 H 0.019 0.981 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.057 0.943 51 H 0.156 0.844 52 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.282 -20.634 -6.464 24.389 hybrid contribution 0.449 0.842 0.389 1.030 sum -10.833 -19.792 -6.075 23.366 Atomic orbital electron populations 1.20673 0.89938 1.02910 1.02342 1.19981 0.97152 0.92859 1.06239 1.20981 0.93169 0.98389 0.97774 1.20879 0.95082 0.96770 1.10959 1.18017 0.83404 0.94167 0.94276 1.46519 1.01741 1.06485 1.78959 1.21759 0.97311 0.85264 1.01138 1.20872 0.93611 0.86000 0.94066 0.90274 1.21843 0.97696 0.97901 0.97805 1.21509 0.99355 0.97393 0.96414 1.22043 0.93612 0.99905 0.91349 1.61848 1.27387 1.30709 1.05226 1.21576 0.94188 0.95048 0.90336 0.92477 1.22365 0.99534 0.99366 1.01807 1.19046 0.95030 0.91162 0.94726 1.21424 0.94183 0.91953 1.46053 0.92658 1.25798 0.97398 1.00553 0.96067 1.70079 1.19391 1.15723 1.52957 0.85694 0.79659 0.77940 0.78864 1.19743 1.21220 1.19736 1.22313 0.96482 0.90585 0.97776 1.20893 0.94721 0.96380 1.10337 1.21060 0.93323 0.98086 0.97103 0.91189 0.90847 0.91893 0.85794 0.87185 0.93618 0.89911 0.90548 0.90572 0.91026 0.89663 0.92730 0.94336 0.92757 0.92698 0.92507 0.91899 0.99113 0.98136 0.93273 0.92848 0.94289 0.84365 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 10.01 71.24 0.71 -0.83 16 2 C -0.16 -3.36 5.88 -19.84 -0.12 -3.47 16 3 C -0.08 -2.06 9.69 22.25 0.22 -1.85 16 4 C -0.21 -5.90 9.26 22.40 0.21 -5.69 16 5 C 0.20 5.09 6.53 38.21 0.25 5.34 16 6 N -0.63 -14.65 2.90 -697.78 -2.02 -16.68 16 7 C 0.09 1.50 9.58 127.77 1.22 2.73 16 8 C 0.16 4.28 2.59 45.04 0.12 4.40 16 9 H 0.08 2.48 5.42 -2.39 -0.01 2.47 16 10 C -0.11 -2.69 5.20 30.67 0.16 -2.53 16 11 C -0.11 -3.04 6.09 30.65 0.19 -2.85 16 12 C 0.06 2.00 4.58 86.33 0.40 2.39 16 13 N -0.53 -19.64 4.27 -871.09 -3.72 -23.36 16 14 C 0.10 3.98 2.29 44.91 0.10 4.08 16 15 H 0.06 2.44 8.02 -2.39 -0.02 2.42 16 16 C -0.17 -5.75 8.47 71.98 0.61 -5.14 16 17 C 0.04 1.96 4.31 29.85 0.13 2.08 16 18 C -0.50 -28.44 8.78 25.60 0.22 -28.21 16 19 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 20 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 21 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16 22 Si 0.95 45.93 29.54 68.60 2.03 47.96 16 23 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 26 C 0.06 1.76 4.47 86.32 0.39 2.15 16 27 C -0.20 -4.21 9.26 22.40 0.21 -4.00 16 28 C -0.08 -1.50 9.69 22.25 0.22 -1.28 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 31 H 0.06 0.92 8.08 -2.39 -0.02 0.90 16 32 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.11 3.32 5.85 -2.91 -0.02 3.30 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.08 1.13 5.97 -2.39 -0.01 1.12 16 36 H 0.08 1.17 6.11 -2.39 -0.01 1.16 16 37 H 0.08 1.56 6.41 -2.39 -0.02 1.55 16 38 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.04 1.18 6.59 -2.38 -0.02 1.17 16 42 H 0.05 2.25 6.09 -2.38 -0.01 2.24 16 43 H 0.05 1.81 6.47 -2.39 -0.02 1.79 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.06 1.80 6.76 -2.38 -0.02 1.78 16 46 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 47 H 0.00 0.02 6.25 -2.39 -0.01 0.01 16 48 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 49 H 0.05 1.79 8.03 -2.39 -0.02 1.77 16 50 H 0.04 1.09 6.47 -2.38 -0.02 1.07 16 51 H 0.14 2.26 6.02 -2.91 -0.02 2.24 16 52 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -65.72 389.25 3.14 -62.58 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.88 Total: 19.35 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 5.69 Total: -32.34 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -5.46 Total: -97.54 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -65.72 3.14 -62.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552204.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.899 kcal (2) G-P(sol) polarization free energy of solvation -65.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds