Wall clock time and date at job start Tue Mar 31 2020 10:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38286 * 119.91895 * 2 1 4 4 C 1.38109 * 120.07022 * 179.72598 * 3 2 1 5 5 C 1.38909 * 119.92338 * 0.54555 * 4 3 2 6 6 N 1.39678 * 120.07495 * 179.74893 * 5 4 3 7 7 C 1.46504 * 119.99913 * 353.90425 * 6 5 4 8 8 C 1.46500 * 120.00121 * 173.90094 * 6 5 4 9 9 H 1.09005 * 109.50242 * 2.54693 * 8 6 5 10 10 C 1.53121 * 109.50475 * 242.47073 * 8 6 5 11 11 C 1.53116 * 109.16030 * 182.40373 * 10 8 6 12 12 C 1.53039 * 109.27811 * 57.65465 * 11 10 8 13 13 N 1.46841 * 109.52364 * 300.82047 * 12 11 10 14 14 C 1.46898 * 111.00116 * 185.83855 * 13 12 11 15 15 H 1.09006 * 109.47304 * 49.25621 * 14 13 12 16 16 C 1.52991 * 109.47355 * 289.25350 * 14 13 12 17 17 C 1.53004 * 109.47415 * 169.24989 * 14 13 12 18 18 C 1.50699 * 109.47088 * 297.33679 * 17 14 13 19 19 H 1.08004 * 120.00319 * 4.86982 * 18 17 14 20 20 C 1.37877 * 119.99953 * 184.87141 * 18 17 14 21 21 N 1.31513 * 120.00084 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00102 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46860 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47057 * 120.00048 * 22 20 18 25 25 H 1.48497 * 109.46789 * 239.99965 * 22 20 18 26 26 C 1.46850 * 111.23325 * 61.71996 * 13 12 11 27 27 C 1.38910 * 119.85484 * 359.72850 * 5 4 3 28 28 C 1.38105 * 119.91990 * 359.97438 * 27 5 4 29 29 H 1.08997 * 109.47330 * 269.72419 * 1 2 3 30 30 H 1.09000 * 109.47392 * 149.72804 * 1 2 3 31 31 H 1.09004 * 109.47483 * 29.72914 * 1 2 3 32 32 H 1.07993 * 119.96668 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.04208 * 180.27406 * 4 3 2 34 34 H 1.09002 * 109.46857 * 89.99881 * 7 6 5 35 35 H 1.09003 * 109.46895 * 209.99607 * 7 6 5 36 36 H 1.09001 * 109.47003 * 329.99716 * 7 6 5 37 37 H 1.08996 * 109.52025 * 302.31223 * 10 8 6 38 38 H 1.09008 * 109.52248 * 62.43606 * 10 8 6 39 39 H 1.09001 * 109.50142 * 177.59512 * 11 10 8 40 40 H 1.09000 * 109.50458 * 297.71143 * 11 10 8 41 41 H 1.08993 * 109.46230 * 60.83847 * 12 11 10 42 42 H 1.09000 * 109.46026 * 180.80167 * 12 11 10 43 43 H 1.08998 * 109.47845 * 179.97438 * 16 14 13 44 44 H 1.09008 * 109.46986 * 299.99849 * 16 14 13 45 45 H 1.09000 * 109.47215 * 59.99760 * 16 14 13 46 46 H 1.09002 * 109.46999 * 57.33178 * 17 14 13 47 47 H 1.08994 * 109.47229 * 177.33172 * 17 14 13 48 48 H 0.97002 * 120.00543 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.49469 * 178.28230 * 26 13 12 50 50 H 1.08998 * 109.42836 * 58.31367 * 26 13 12 51 51 H 1.07998 * 120.04155 * 180.02562 * 27 5 4 52 52 H 1.08006 * 119.96228 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1986 0.0000 4 6 3.5778 1.2022 0.0057 5 6 4.2739 0.0002 0.0000 6 7 5.6707 0.0002 0.0005 7 6 6.4032 1.2625 -0.1278 8 6 6.4032 -1.2620 0.1293 9 1 5.6962 -2.0908 0.1676 10 6 7.2362 -1.2409 1.4139 11 6 8.0442 -2.5379 1.5103 12 6 8.9269 -2.6768 0.2678 13 7 8.0833 -2.6927 -0.9341 14 6 8.8839 -2.9635 -2.1356 15 1 9.5166 -3.8340 -1.9621 16 6 9.7612 -1.7496 -2.4482 17 6 7.9525 -3.2377 -3.3180 18 6 7.1346 -4.4719 -3.0376 19 1 7.2083 -4.9621 -2.0780 20 6 6.2922 -4.9755 -4.0060 21 7 6.2020 -4.3784 -5.1742 22 14 5.2778 -6.5050 -3.6581 23 1 5.5583 -6.9821 -2.2800 24 1 3.8342 -6.1813 -3.7861 25 1 5.6350 -7.5678 -4.6317 26 6 7.3327 -1.4383 -1.0736 27 6 3.5779 -1.2020 -0.0057 28 6 2.1969 -1.1984 -0.0052 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3634 -0.8875 -0.5180 31 1 -0.3634 0.8924 -0.5096 32 1 1.6549 2.1327 -0.0004 33 1 4.1160 2.1386 0.0102 34 1 6.5845 1.6796 0.8628 35 1 7.3559 1.0807 -0.6254 36 1 5.8143 1.9661 -0.7162 37 1 7.9157 -0.3889 1.3934 38 1 6.5742 -1.1581 2.2760 39 1 8.6717 -2.5103 2.4012 40 1 7.3636 -3.3871 1.5700 41 1 9.6166 -1.8344 0.2163 42 1 9.4930 -3.6064 0.3266 43 1 10.3556 -1.9506 -3.3394 44 1 9.1284 -0.8791 -2.6217 45 1 10.4248 -1.5543 -1.6058 46 1 7.2874 -2.3861 -3.4618 47 1 8.5454 -3.3918 -4.2195 48 1 5.6091 -4.7324 -5.8555 49 1 6.7409 -1.4684 -1.9885 50 1 8.0299 -0.6018 -1.1196 51 1 4.1161 -2.1383 -0.0098 52 1 1.6551 -2.1327 -0.0092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839552206.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:43 Heat of formation + Delta-G solvation = 29.950836 kcal Electronic energy + Delta-G solvation = -27816.405179 eV Core-core repulsion = 24394.335982 eV Total energy + Delta-G solvation = -3422.069198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93985 -38.75765 -36.40820 -34.27704 -32.40159 -31.66230 -30.98863 -29.59801 -29.36924 -27.32998 -27.29419 -24.95502 -24.16731 -22.93052 -22.54310 -21.84344 -20.38973 -19.47588 -18.71998 -17.20469 -16.17133 -16.11801 -15.18788 -14.86478 -14.73222 -14.41651 -14.35245 -14.15744 -13.92686 -13.71263 -13.51259 -13.44087 -13.24110 -13.05422 -12.52381 -12.36217 -12.12050 -12.01644 -11.92925 -11.88922 -11.76242 -11.45441 -11.27589 -11.15758 -11.03515 -10.77032 -10.61098 -10.46378 -10.39340 -10.21595 -10.16869 -9.88432 -9.40435 -9.14177 -8.94514 -8.70446 -8.24842 -7.50485 -6.98549 -5.87343 -3.85042 1.66345 1.78803 3.23185 3.38954 3.46735 3.51544 4.06136 4.52353 4.58391 4.92491 4.99842 5.05387 5.11841 5.16399 5.21689 5.28689 5.37747 5.46216 5.49777 5.52065 5.57830 5.63247 5.68711 5.72607 5.75641 5.79057 5.83628 5.86585 5.88317 5.94823 5.97902 6.00538 6.07029 6.09404 6.19695 6.26923 6.30830 6.37970 6.51529 6.53399 6.58173 6.66777 6.71221 6.91207 6.96390 7.09929 7.43783 7.56310 7.67233 7.75113 7.90826 8.00749 8.13805 8.59983 9.22085 9.77048 11.24768 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009208 B = 0.005003 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.999234 B = 5594.946989 C = 7510.867452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.155 4.155 3 C -0.076 4.076 4 C -0.199 4.199 5 C 0.220 3.780 6 N -0.623 5.623 7 C 0.094 3.906 8 C 0.151 3.849 9 H 0.101 0.899 10 C -0.125 4.125 11 C -0.113 4.113 12 C 0.051 3.949 13 N -0.508 5.508 14 C 0.089 3.911 15 H 0.071 0.929 16 C -0.183 4.183 17 C 0.030 3.970 18 C -0.489 4.489 19 H 0.063 0.937 20 C 0.051 3.949 21 N -0.903 5.903 22 Si 0.886 3.114 23 H -0.273 1.273 24 H -0.287 1.287 25 H -0.288 1.288 26 C 0.051 3.949 27 C -0.188 4.188 28 C -0.070 4.070 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.039 0.961 46 H 0.014 0.986 47 H 0.021 0.979 48 H 0.256 0.744 49 H 0.090 0.910 50 H 0.026 0.974 51 H 0.128 0.872 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 11.454 13.448 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.157 4.157 3 C -0.095 4.095 4 C -0.222 4.222 5 C 0.118 3.882 6 N -0.333 5.333 7 C -0.050 4.050 8 C 0.047 3.953 9 H 0.119 0.881 10 C -0.164 4.164 11 C -0.151 4.151 12 C -0.077 4.077 13 N -0.232 5.232 14 C -0.019 4.019 15 H 0.089 0.911 16 C -0.242 4.242 17 C -0.007 4.007 18 C -0.528 4.528 19 H 0.081 0.919 20 C -0.148 4.148 21 N -0.544 5.544 22 Si 0.715 3.285 23 H -0.197 1.197 24 H -0.213 1.213 25 H -0.214 1.214 26 C -0.078 4.078 27 C -0.210 4.210 28 C -0.089 4.089 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.032 0.968 47 H 0.039 0.961 48 H 0.066 0.934 49 H 0.108 0.892 50 H 0.044 0.956 51 H 0.146 0.854 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.116 11.059 13.333 17.451 hybrid contribution 0.112 -0.092 -0.123 0.191 sum -2.004 10.967 13.210 17.285 Atomic orbital electron populations 1.20626 0.91890 1.02071 1.01356 1.19606 0.95590 0.93157 1.07323 1.20670 0.93323 0.97066 0.98402 1.20587 0.94225 0.96162 1.11196 1.17831 0.83015 0.93815 0.93555 1.46482 1.01862 1.06173 1.78815 1.21558 0.97041 0.86033 1.00353 1.21110 0.94178 0.85894 0.94097 0.88077 1.21937 0.98621 0.98048 0.97807 1.21536 0.98712 0.97780 0.97094 1.22108 0.94509 1.00146 0.90958 1.61948 1.26665 1.32442 1.02100 1.21916 0.93860 0.94827 0.91313 0.91104 1.22517 1.00223 1.00739 1.00731 1.19194 0.93600 0.97089 0.90777 1.21207 1.22424 1.09873 0.99255 0.91898 1.25005 0.97396 0.97167 0.95254 1.69969 1.38983 1.40515 1.04962 0.86617 0.80184 0.83509 0.78182 1.19739 1.21310 1.21431 1.22371 0.96074 0.90445 0.98876 1.20862 0.94351 0.96957 1.08799 1.20780 0.93435 0.97304 0.97363 0.92213 0.92110 0.92316 0.86755 0.86468 0.93927 0.91516 0.91697 0.92521 0.92101 0.91944 0.90868 0.95856 0.91088 0.92505 0.93031 0.94219 0.96826 0.96065 0.93402 0.89221 0.95627 0.85388 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.01 36.00 0.36 -0.70 16 2 C -0.15 -2.03 5.88 -104.59 -0.62 -2.64 16 3 C -0.08 -0.96 9.69 -39.61 -0.38 -1.35 16 4 C -0.20 -2.67 9.16 -39.38 -0.36 -3.03 16 5 C 0.22 3.29 6.53 -83.79 -0.55 2.75 16 6 N -0.62 -8.84 2.90 -171.90 -0.50 -9.34 16 7 C 0.09 1.08 9.16 59.85 0.55 1.63 16 8 C 0.15 2.28 2.63 -67.85 -0.18 2.10 16 9 H 0.10 1.71 5.32 -51.93 -0.28 1.43 16 10 C -0.13 -1.61 5.35 -26.61 -0.14 -1.75 16 11 C -0.11 -1.45 6.09 -26.65 -0.16 -1.62 16 12 C 0.05 0.76 5.15 -3.84 -0.02 0.74 16 13 N -0.51 -9.25 4.20 -226.70 -0.95 -10.20 16 14 C 0.09 1.76 2.28 -67.72 -0.15 1.61 16 15 H 0.07 1.44 7.97 -51.93 -0.41 1.02 16 16 C -0.18 -3.10 8.44 37.15 0.31 -2.79 16 17 C 0.03 0.76 4.35 -27.88 -0.12 0.64 16 18 C -0.49 -13.55 8.80 -34.44 -0.30 -13.86 16 19 H 0.06 1.74 7.68 -52.48 -0.40 1.34 16 20 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 21 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 22 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 C 0.05 0.88 3.76 -3.84 -0.01 0.87 16 27 C -0.19 -2.94 9.30 -39.38 -0.37 -3.31 16 28 C -0.07 -1.01 9.69 -39.61 -0.38 -1.39 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.11 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.12 1.35 6.32 -52.49 -0.33 1.02 16 34 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.77 6.28 -51.93 -0.33 0.45 16 36 H 0.06 0.70 6.47 -51.93 -0.34 0.36 16 37 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 38 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.33 6.90 -51.93 -0.36 -0.03 16 42 H 0.07 1.04 8.01 -51.93 -0.42 0.63 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.88 6.45 -51.92 -0.34 0.54 16 45 H 0.04 0.59 6.84 -51.93 -0.36 0.24 16 46 H 0.01 0.37 6.34 -51.93 -0.33 0.04 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 49 H 0.09 1.88 6.20 -51.93 -0.32 1.56 16 50 H 0.03 0.42 4.97 -51.93 -0.26 0.16 16 51 H 0.13 2.09 5.76 -52.49 -0.30 1.79 16 52 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -30.15 389.75 -11.43 -41.59 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -8.94 Total: 2.32 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -2.63 Total: -20.72 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.71 Total: -46.12 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.15 -11.43 -41.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552206.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.536 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds