Wall clock time and date at job start Tue Mar 31 2020 10:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38286 * 119.91895 * 2 1 4 4 C 1.38109 * 120.07022 * 179.72598 * 3 2 1 5 5 C 1.38909 * 119.92338 * 0.54555 * 4 3 2 6 6 N 1.39678 * 120.07495 * 179.74893 * 5 4 3 7 7 C 1.46504 * 119.99913 * 353.90425 * 6 5 4 8 8 C 1.46500 * 120.00121 * 173.90094 * 6 5 4 9 9 H 1.09005 * 109.50242 * 2.54693 * 8 6 5 10 10 C 1.53121 * 109.50475 * 242.47073 * 8 6 5 11 11 C 1.53116 * 109.16030 * 182.40373 * 10 8 6 12 12 C 1.53039 * 109.27811 * 57.65465 * 11 10 8 13 13 N 1.46841 * 109.52364 * 300.82047 * 12 11 10 14 14 C 1.46898 * 111.00116 * 185.83855 * 13 12 11 15 15 H 1.09006 * 109.47304 * 49.25621 * 14 13 12 16 16 C 1.52991 * 109.47355 * 289.25350 * 14 13 12 17 17 C 1.53004 * 109.47415 * 169.24989 * 14 13 12 18 18 C 1.50699 * 109.47088 * 297.33679 * 17 14 13 19 19 H 1.08004 * 120.00319 * 4.86982 * 18 17 14 20 20 C 1.37877 * 119.99953 * 184.87141 * 18 17 14 21 21 N 1.31513 * 120.00084 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00102 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46860 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47057 * 120.00048 * 22 20 18 25 25 H 1.48497 * 109.46789 * 239.99965 * 22 20 18 26 26 C 1.46850 * 111.23325 * 61.71996 * 13 12 11 27 27 C 1.38910 * 119.85484 * 359.72850 * 5 4 3 28 28 C 1.38105 * 119.91990 * 359.97438 * 27 5 4 29 29 H 1.08997 * 109.47330 * 269.72419 * 1 2 3 30 30 H 1.09000 * 109.47392 * 149.72804 * 1 2 3 31 31 H 1.09004 * 109.47483 * 29.72914 * 1 2 3 32 32 H 1.07993 * 119.96668 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.04208 * 180.27406 * 4 3 2 34 34 H 1.09002 * 109.46857 * 89.99881 * 7 6 5 35 35 H 1.09003 * 109.46895 * 209.99607 * 7 6 5 36 36 H 1.09001 * 109.47003 * 329.99716 * 7 6 5 37 37 H 1.08996 * 109.52025 * 302.31223 * 10 8 6 38 38 H 1.09008 * 109.52248 * 62.43606 * 10 8 6 39 39 H 1.09001 * 109.50142 * 177.59512 * 11 10 8 40 40 H 1.09000 * 109.50458 * 297.71143 * 11 10 8 41 41 H 1.08993 * 109.46230 * 60.83847 * 12 11 10 42 42 H 1.09000 * 109.46026 * 180.80167 * 12 11 10 43 43 H 1.08998 * 109.47845 * 179.97438 * 16 14 13 44 44 H 1.09008 * 109.46986 * 299.99849 * 16 14 13 45 45 H 1.09000 * 109.47215 * 59.99760 * 16 14 13 46 46 H 1.09002 * 109.46999 * 57.33178 * 17 14 13 47 47 H 1.08994 * 109.47229 * 177.33172 * 17 14 13 48 48 H 0.97002 * 120.00543 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.49469 * 178.28230 * 26 13 12 50 50 H 1.08998 * 109.42836 * 58.31367 * 26 13 12 51 51 H 1.07998 * 120.04155 * 180.02562 * 27 5 4 52 52 H 1.08006 * 119.96228 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1986 0.0000 4 6 3.5778 1.2022 0.0057 5 6 4.2739 0.0002 0.0000 6 7 5.6707 0.0002 0.0005 7 6 6.4032 1.2625 -0.1278 8 6 6.4032 -1.2620 0.1293 9 1 5.6962 -2.0908 0.1676 10 6 7.2362 -1.2409 1.4139 11 6 8.0442 -2.5379 1.5103 12 6 8.9269 -2.6768 0.2678 13 7 8.0833 -2.6927 -0.9341 14 6 8.8839 -2.9635 -2.1356 15 1 9.5166 -3.8340 -1.9621 16 6 9.7612 -1.7496 -2.4482 17 6 7.9525 -3.2377 -3.3180 18 6 7.1346 -4.4719 -3.0376 19 1 7.2083 -4.9621 -2.0780 20 6 6.2922 -4.9755 -4.0060 21 7 6.2020 -4.3784 -5.1742 22 14 5.2778 -6.5050 -3.6581 23 1 5.5583 -6.9821 -2.2800 24 1 3.8342 -6.1813 -3.7861 25 1 5.6350 -7.5678 -4.6317 26 6 7.3327 -1.4383 -1.0736 27 6 3.5779 -1.2020 -0.0057 28 6 2.1969 -1.1984 -0.0052 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3634 -0.8875 -0.5180 31 1 -0.3634 0.8924 -0.5096 32 1 1.6549 2.1327 -0.0004 33 1 4.1160 2.1386 0.0102 34 1 6.5845 1.6796 0.8628 35 1 7.3559 1.0807 -0.6254 36 1 5.8143 1.9661 -0.7162 37 1 7.9157 -0.3889 1.3934 38 1 6.5742 -1.1581 2.2760 39 1 8.6717 -2.5103 2.4012 40 1 7.3636 -3.3871 1.5700 41 1 9.6166 -1.8344 0.2163 42 1 9.4930 -3.6064 0.3266 43 1 10.3556 -1.9506 -3.3394 44 1 9.1284 -0.8791 -2.6217 45 1 10.4248 -1.5543 -1.6058 46 1 7.2874 -2.3861 -3.4618 47 1 8.5454 -3.3918 -4.2195 48 1 5.6091 -4.7324 -5.8555 49 1 6.7409 -1.4684 -1.9885 50 1 8.0299 -0.6018 -1.1196 51 1 4.1161 -2.1383 -0.0098 52 1 1.6551 -2.1327 -0.0092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839552206.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:42 Heat of formation + Delta-G solvation = 14.702251 kcal Electronic energy + Delta-G solvation = -27817.066408 eV Core-core repulsion = 24394.335982 eV Total energy + Delta-G solvation = -3422.730426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11015 -39.97405 -37.63054 -35.71870 -34.36007 -32.70725 -32.06718 -31.11036 -30.52894 -29.14280 -28.27892 -25.99761 -25.66985 -24.72429 -23.66511 -22.97760 -21.57367 -20.81484 -20.05428 -18.39908 -18.26642 -17.40979 -16.56664 -16.34636 -15.92954 -15.90033 -15.48562 -15.33671 -15.12751 -14.89152 -14.72718 -14.54811 -14.38957 -14.25584 -14.05404 -13.68954 -13.58191 -13.41992 -13.04004 -13.00471 -12.88972 -12.85821 -12.78960 -12.61838 -12.40952 -12.32705 -12.14200 -11.89990 -11.74020 -11.57484 -11.41751 -11.37965 -11.07715 -10.97397 -10.49752 -10.40940 -9.78874 -8.90979 -8.11308 -8.05652 -6.15462 0.57815 0.72257 1.38095 1.39608 1.52181 2.14912 2.45604 2.98626 3.15040 3.27799 3.77711 3.90091 3.93909 4.09077 4.13008 4.15297 4.18587 4.26843 4.33856 4.39520 4.42951 4.51286 4.54420 4.60431 4.64941 4.66436 4.75052 4.76681 4.84476 4.86404 4.89867 4.93102 4.93603 5.01127 5.05830 5.10938 5.19067 5.19503 5.21086 5.25410 5.29399 5.44421 5.44671 5.49962 5.59921 5.70134 5.86482 5.88690 6.07056 6.28919 6.36335 6.50627 6.54412 6.66180 6.99504 7.50685 9.01231 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009208 B = 0.005003 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.999234 B = 5594.946989 C = 7510.867452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.160 4.160 3 C -0.077 4.077 4 C -0.201 4.201 5 C 0.202 3.798 6 N -0.629 5.629 7 C 0.091 3.909 8 C 0.156 3.844 9 H 0.074 0.926 10 C -0.114 4.114 11 C -0.108 4.108 12 C 0.052 3.948 13 N -0.530 5.530 14 C 0.097 3.903 15 H 0.068 0.932 16 C -0.172 4.172 17 C 0.038 3.962 18 C -0.494 4.494 19 H 0.060 0.940 20 C -0.005 4.005 21 N -0.941 5.941 22 Si 0.951 3.049 23 H -0.263 1.263 24 H -0.286 1.286 25 H -0.280 1.280 26 C 0.065 3.935 27 C -0.216 4.216 28 C -0.086 4.086 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.069 0.931 46 H -0.014 1.014 47 H -0.008 1.008 48 H 0.257 0.743 49 H 0.039 0.961 50 H 0.040 0.960 51 H 0.107 0.893 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 12.806 15.780 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.162 4.162 3 C -0.096 4.096 4 C -0.223 4.223 5 C 0.100 3.900 6 N -0.339 5.339 7 C -0.051 4.051 8 C 0.052 3.948 9 H 0.092 0.908 10 C -0.152 4.152 11 C -0.146 4.146 12 C -0.076 4.076 13 N -0.255 5.255 14 C -0.012 4.012 15 H 0.086 0.914 16 C -0.231 4.231 17 C 0.001 3.999 18 C -0.533 4.533 19 H 0.079 0.921 20 C -0.201 4.201 21 N -0.584 5.584 22 Si 0.778 3.222 23 H -0.187 1.187 24 H -0.213 1.213 25 H -0.206 1.206 26 C -0.064 4.064 27 C -0.238 4.238 28 C -0.105 4.105 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.004 0.996 47 H 0.010 0.990 48 H 0.066 0.934 49 H 0.058 0.942 50 H 0.058 0.942 51 H 0.125 0.875 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.020 12.417 15.685 20.107 hybrid contribution 0.054 -0.488 -0.875 1.003 sum -1.966 11.929 14.810 19.118 Atomic orbital electron populations 1.20665 0.89773 1.02840 1.02463 1.19979 0.97242 0.92757 1.06247 1.21070 0.93274 0.98113 0.97111 1.20874 0.94789 0.96231 1.10412 1.18037 0.83529 0.94179 0.94228 1.46552 1.01767 1.06573 1.79013 1.21710 0.96725 0.85005 1.01690 1.20936 0.93500 0.85948 0.94437 0.90762 1.21842 0.98472 0.98612 0.96298 1.21531 0.98558 0.97173 0.97317 1.22193 0.94610 1.00956 0.89813 1.61815 1.27640 1.33366 1.02631 1.21597 0.93025 0.96311 0.90231 0.91359 1.22366 0.99883 0.98884 1.01922 1.19027 0.93523 0.95178 0.92168 1.21517 1.22388 1.10460 0.98903 0.92127 1.25839 0.98743 1.00365 0.95120 1.70101 1.40033 1.42277 1.05969 0.85592 0.78304 0.79854 0.78497 1.18700 1.21250 1.20642 1.22160 0.95947 0.90558 0.97727 1.20886 0.95196 0.96798 1.10925 1.20973 0.93119 0.98467 0.97892 0.90840 0.92119 0.90811 0.83812 0.84400 0.91829 0.91663 0.90945 0.90985 0.91371 0.88747 0.92344 0.94208 0.90845 0.92540 0.93493 0.91237 0.99552 0.98961 0.93398 0.94231 0.94210 0.87465 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 10.01 71.24 0.71 -1.17 16 2 C -0.16 -4.04 5.88 -19.84 -0.12 -4.16 16 3 C -0.08 -1.81 9.69 22.25 0.22 -1.60 16 4 C -0.20 -5.11 9.16 22.40 0.21 -4.90 16 5 C 0.20 6.12 6.53 38.21 0.25 6.37 16 6 N -0.63 -17.74 2.90 -697.76 -2.02 -19.76 16 7 C 0.09 1.95 9.16 127.77 1.17 3.12 16 8 C 0.16 4.79 2.63 45.04 0.12 4.90 16 9 H 0.07 2.68 5.32 -2.38 -0.01 2.67 16 10 C -0.11 -2.70 5.35 30.67 0.16 -2.54 16 11 C -0.11 -2.54 6.09 30.65 0.19 -2.35 16 12 C 0.05 1.43 5.15 86.33 0.44 1.88 16 13 N -0.53 -19.46 4.20 -871.15 -3.66 -23.11 16 14 C 0.10 3.91 2.28 44.91 0.10 4.01 16 15 H 0.07 2.78 7.97 -2.38 -0.02 2.76 16 16 C -0.17 -5.69 8.44 71.98 0.61 -5.08 16 17 C 0.04 2.02 4.35 29.85 0.13 2.15 16 18 C -0.49 -28.45 8.80 25.60 0.23 -28.23 16 19 H 0.06 3.45 7.68 -2.91 -0.02 3.43 16 20 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 21 N -0.94 -59.14 13.29 21.45 0.28 -58.85 16 22 Si 0.95 46.49 29.54 68.60 2.03 48.51 16 23 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 26 C 0.07 2.30 3.76 86.32 0.32 2.62 16 27 C -0.22 -7.14 9.30 22.40 0.21 -6.93 16 28 C -0.09 -2.53 9.69 22.25 0.22 -2.32 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 31 H 0.07 1.16 8.08 -2.38 -0.02 1.14 16 32 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.14 2.84 6.32 -2.91 -0.02 2.83 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.41 6.28 -2.39 -0.01 1.39 16 36 H 0.07 1.43 6.47 -2.39 -0.02 1.41 16 37 H 0.07 1.52 7.67 -2.39 -0.02 1.50 16 38 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.04 0.99 6.90 -2.39 -0.02 0.97 16 42 H 0.07 2.01 8.01 -2.39 -0.02 1.99 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.58 6.45 -2.38 -0.02 1.57 16 45 H 0.07 1.90 6.84 -2.39 -0.02 1.88 16 46 H -0.01 -0.80 6.34 -2.39 -0.02 -0.81 16 47 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 48 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 49 H 0.04 1.78 6.20 -2.39 -0.01 1.77 16 50 H 0.04 1.27 4.97 -2.39 -0.01 1.26 16 51 H 0.11 3.88 5.76 -2.91 -0.02 3.86 16 52 H 0.12 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -68.41 389.75 3.14 -65.27 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.88 Total: 21.98 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 5.63 Total: -34.04 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -5.40 Total: -101.73 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -68.41 3.14 -65.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552206.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.972 kcal (2) G-P(sol) polarization free energy of solvation -68.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds