Wall clock time and date at job start Tue Mar 31 2020 10:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38285 * 119.92728 * 2 1 4 4 C 1.38094 * 120.07790 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.92477 * 359.97438 * 4 3 2 6 6 N 1.39672 * 120.07444 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99893 * 174.34158 * 6 5 4 8 8 C 1.46503 * 120.00075 * 354.33975 * 6 5 4 9 9 H 1.08997 * 109.50063 * 1.48894 * 8 6 5 10 10 C 1.53117 * 109.50377 * 121.61237 * 8 6 5 11 11 C 1.53119 * 109.16193 * 177.59609 * 10 8 6 12 12 C 1.53035 * 109.27758 * 302.34444 * 11 10 8 13 13 N 1.46847 * 109.52601 * 59.17864 * 12 11 10 14 14 C 1.46898 * 111.00292 * 174.16001 * 13 12 11 15 15 H 1.09004 * 109.46583 * 66.75573 * 14 13 12 16 16 C 1.52995 * 109.47244 * 186.75620 * 14 13 12 17 17 C 1.52998 * 109.47109 * 306.76152 * 14 13 12 18 18 C 1.50700 * 109.46800 * 303.87619 * 17 14 13 19 19 H 1.08000 * 120.00233 * 4.51050 * 18 17 14 20 20 C 1.37880 * 119.99913 * 184.51751 * 18 17 14 21 21 N 1.31510 * 120.00321 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99935 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47215 * 89.99629 * 22 20 18 24 24 H 1.48493 * 109.47347 * 209.99622 * 22 20 18 25 25 H 1.48500 * 109.47310 * 329.99910 * 22 20 18 26 26 C 1.46847 * 111.19693 * 298.26166 * 13 12 11 27 27 C 1.38911 * 119.85007 * 0.25142 * 5 4 3 28 28 C 1.38108 * 119.92160 * 359.51871 * 27 5 4 29 29 H 1.09000 * 109.47127 * 90.00305 * 1 2 3 30 30 H 1.09000 * 109.46958 * 210.00362 * 1 2 3 31 31 H 1.09002 * 109.47438 * 330.00617 * 1 2 3 32 32 H 1.08005 * 119.95756 * 0.02562 * 3 2 1 33 33 H 1.08005 * 120.03954 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47280 * 89.99758 * 7 6 5 35 35 H 1.09003 * 109.46962 * 209.99335 * 7 6 5 36 36 H 1.08993 * 109.47372 * 330.00139 * 7 6 5 37 37 H 1.09000 * 109.51931 * 297.49995 * 10 8 6 38 38 H 1.09000 * 109.52701 * 57.68762 * 10 8 6 39 39 H 1.09001 * 109.50401 * 182.39890 * 11 10 8 40 40 H 1.09006 * 109.53506 * 62.30263 * 11 10 8 41 41 H 1.08999 * 109.46197 * 299.16403 * 12 11 10 42 42 H 1.09002 * 109.46178 * 179.19519 * 12 11 10 43 43 H 1.09003 * 109.46887 * 180.02562 * 16 14 13 44 44 H 1.09006 * 109.47129 * 299.99872 * 16 14 13 45 45 H 1.08995 * 109.47454 * 60.00201 * 16 14 13 46 46 H 1.08996 * 109.47731 * 63.87573 * 17 14 13 47 47 H 1.09001 * 109.46926 * 183.87896 * 17 14 13 48 48 H 0.96997 * 120.00199 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.45868 * 301.72024 * 26 13 12 50 50 H 1.09001 * 109.45958 * 181.76120 * 26 13 12 51 51 H 1.07994 * 120.03938 * 179.75128 * 27 5 4 52 52 H 1.07995 * 119.95944 * 180.23484 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2740 0.0000 0.0016 6 7 5.6707 0.0000 0.0016 7 6 6.4032 -1.2624 0.1278 8 6 6.4033 1.2624 -0.1247 9 1 5.6957 2.0896 -0.1806 10 6 7.3140 1.4489 1.0920 11 6 8.1198 2.7400 0.9234 12 6 8.9233 2.6680 -0.3770 13 7 8.0071 2.4901 -1.5108 14 6 8.7305 2.5553 -2.7876 15 1 9.3984 1.6979 -2.8709 16 6 7.7282 2.5354 -3.9433 17 6 9.5491 3.8467 -2.8445 18 6 8.6381 5.0285 -2.6339 19 1 7.5948 4.8718 -2.4030 20 6 9.1366 6.3100 -2.7361 21 7 10.4071 6.5010 -3.0169 22 14 8.0072 7.7750 -2.4757 23 1 8.0113 8.1541 -1.0399 24 1 8.4855 8.9199 -3.2913 25 1 6.6268 7.4155 -2.8887 26 6 7.2565 1.2333 -1.3948 27 6 3.5779 -1.2021 -0.0031 28 6 2.1968 -1.1985 0.0011 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6550 2.1327 0.0004 33 1 4.1161 2.1385 0.0001 34 1 6.5849 -1.6778 -0.8634 35 1 7.3557 -1.0816 0.6261 36 1 5.8142 -1.9672 0.7146 37 1 6.7069 1.5137 1.9949 38 1 7.9955 0.6018 1.1702 39 1 8.8012 2.8564 1.7663 40 1 7.4402 3.5914 0.8847 41 1 9.6128 1.8251 -0.3317 42 1 9.4871 3.5917 -0.5072 43 1 8.2651 2.5833 -4.8907 44 1 7.1451 1.6153 -3.9027 45 1 7.0604 3.3928 -3.8600 46 1 10.3091 3.8300 -2.0634 47 1 10.0312 3.9286 -3.8187 48 1 10.7578 7.4025 -3.0884 49 1 7.9539 0.3971 -1.3447 50 1 6.6098 1.1150 -2.2642 51 1 4.1160 -2.1384 -0.0064 52 1 1.6551 -2.1327 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839552209.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:45 Heat of formation + Delta-G solvation = 31.458876 kcal Electronic energy + Delta-G solvation = -27494.543518 eV Core-core repulsion = 24072.539714 eV Total energy + Delta-G solvation = -3422.003804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.01804 -38.73326 -36.51379 -34.26294 -32.37279 -31.75815 -31.14762 -29.97256 -29.36867 -27.49191 -26.90358 -24.93899 -24.19634 -22.94698 -22.56273 -21.83667 -20.51964 -19.21207 -19.04209 -17.41403 -16.44178 -15.86284 -15.28036 -15.00559 -14.80296 -14.44951 -14.35916 -14.26282 -13.91975 -13.71898 -13.65731 -13.37880 -13.22479 -12.95732 -12.81890 -12.41390 -12.19300 -12.13258 -12.08935 -12.00295 -11.48120 -11.20630 -11.17196 -11.02300 -10.92122 -10.84161 -10.68190 -10.59006 -10.43038 -10.23059 -10.08120 -9.83919 -9.44990 -9.11540 -8.97676 -8.88389 -8.26626 -7.50742 -7.14232 -5.90045 -3.87659 1.48577 1.61862 3.09375 3.38237 3.44897 3.49170 3.88860 4.52155 4.57604 4.79980 4.85919 4.95943 5.02107 5.09201 5.13632 5.28748 5.30394 5.40044 5.45292 5.46625 5.50457 5.54539 5.56085 5.65883 5.67764 5.78246 5.83978 5.91508 5.94314 5.94431 6.00193 6.05598 6.11956 6.16965 6.20949 6.28230 6.35691 6.38202 6.48518 6.56862 6.66115 6.74050 6.79880 6.91899 6.94515 7.15553 7.31888 7.54109 7.58523 7.67152 7.92268 7.97798 8.12600 8.57791 9.20899 9.74700 11.22037 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.003463 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.692536 B = 8083.591683 C = 8955.239744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.155 4.155 3 C -0.071 4.071 4 C -0.192 4.192 5 C 0.219 3.781 6 N -0.624 5.624 7 C 0.093 3.907 8 C 0.152 3.848 9 H 0.100 0.900 10 C -0.127 4.127 11 C -0.112 4.112 12 C 0.056 3.944 13 N -0.509 5.509 14 C 0.092 3.908 15 H 0.009 0.991 16 C -0.131 4.131 17 C 0.024 3.976 18 C -0.486 4.486 19 H 0.068 0.932 20 C 0.050 3.950 21 N -0.905 5.905 22 Si 0.888 3.112 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.275 1.275 26 C 0.045 3.955 27 C -0.199 4.199 28 C -0.074 4.074 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.015 0.985 42 H 0.102 0.898 43 H 0.049 0.951 44 H 0.030 0.970 45 H 0.072 0.928 46 H 0.014 0.986 47 H 0.023 0.977 48 H 0.257 0.743 49 H 0.021 0.979 50 H 0.075 0.925 51 H 0.118 0.882 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.599 -15.951 8.047 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.157 4.157 3 C -0.089 4.089 4 C -0.214 4.214 5 C 0.117 3.883 6 N -0.334 5.334 7 C -0.050 4.050 8 C 0.049 3.951 9 H 0.118 0.882 10 C -0.166 4.166 11 C -0.151 4.151 12 C -0.072 4.072 13 N -0.234 5.234 14 C -0.016 4.016 15 H 0.027 0.973 16 C -0.189 4.189 17 C -0.013 4.013 18 C -0.524 4.524 19 H 0.086 0.914 20 C -0.149 4.149 21 N -0.545 5.545 22 Si 0.716 3.284 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.200 1.200 26 C -0.084 4.084 27 C -0.222 4.222 28 C -0.093 4.093 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.033 0.967 42 H 0.120 0.880 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.032 0.968 47 H 0.041 0.959 48 H 0.066 0.934 49 H 0.039 0.961 50 H 0.093 0.907 51 H 0.136 0.864 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.604 -15.437 8.012 21.479 hybrid contribution 0.232 0.128 0.074 0.275 sum -12.371 -15.309 8.087 21.279 Atomic orbital electron populations 1.20633 0.91805 1.01966 1.01590 1.19622 0.95650 0.93149 1.07296 1.20775 0.93390 0.97312 0.97450 1.20821 0.94314 0.96818 1.09467 1.17851 0.83057 0.93830 0.93524 1.46563 1.01842 1.06369 1.78649 1.21565 0.96848 0.85885 1.00740 1.21110 0.93950 0.85613 0.94460 0.88209 1.21964 0.98338 0.98644 0.97629 1.21547 0.99035 0.97155 0.97344 1.22141 0.93686 1.01839 0.89551 1.61779 1.27986 1.31230 1.02452 1.21722 0.93806 0.98521 0.87528 0.97311 1.21761 0.99331 1.00655 0.97110 1.19290 0.94437 0.90390 0.97223 1.21186 0.96282 0.89680 1.45300 0.91393 1.25030 0.94869 0.99001 0.96046 1.69964 1.12977 1.21197 1.50408 0.86660 0.81221 0.82609 0.77878 1.20967 1.21708 1.19950 1.22433 0.96840 0.91589 0.97555 1.20614 0.94245 0.96244 1.11069 1.20696 0.93322 0.97143 0.98123 0.92035 0.92306 0.92163 0.86383 0.85571 0.93686 0.91494 0.91754 0.92105 0.92421 0.91803 0.90739 0.96702 0.87955 0.93220 0.95108 0.90861 0.96804 0.95916 0.93353 0.96111 0.90715 0.86386 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.16 -1.72 5.88 -104.59 -0.62 -2.33 16 3 C -0.07 -0.84 9.69 -39.62 -0.38 -1.22 16 4 C -0.19 -2.52 9.30 -39.38 -0.37 -2.89 16 5 C 0.22 2.84 6.54 -83.79 -0.55 2.29 16 6 N -0.62 -7.79 2.90 -171.90 -0.50 -8.29 16 7 C 0.09 0.95 9.15 59.85 0.55 1.50 16 8 C 0.15 2.11 2.63 -67.85 -0.18 1.93 16 9 H 0.10 1.50 5.32 -51.93 -0.28 1.22 16 10 C -0.13 -1.65 5.28 -26.61 -0.14 -1.80 16 11 C -0.11 -1.66 6.09 -26.65 -0.16 -1.83 16 12 C 0.06 0.99 5.00 -3.84 -0.02 0.97 16 13 N -0.51 -9.44 3.81 -226.70 -0.86 -10.31 16 14 C 0.09 1.87 2.34 -67.72 -0.16 1.71 16 15 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 16 C -0.13 -2.50 8.84 37.16 0.33 -2.18 16 17 C 0.02 0.58 4.17 -27.88 -0.12 0.47 16 18 C -0.49 -13.02 7.53 -34.44 -0.26 -13.27 16 19 H 0.07 1.83 6.88 -52.49 -0.36 1.47 16 20 C 0.05 1.40 5.46 -17.82 -0.10 1.30 16 21 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 22 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 26 C 0.05 0.71 4.58 -3.83 -0.02 0.69 16 27 C -0.20 -2.31 9.16 -39.38 -0.36 -2.67 16 28 C -0.07 -0.80 9.69 -39.61 -0.38 -1.19 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.13 1.68 5.76 -52.48 -0.30 1.38 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.66 6.31 -51.93 -0.33 0.33 16 36 H 0.06 0.56 6.46 -51.93 -0.34 0.23 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.72 6.52 -51.93 -0.34 0.38 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.10 2.15 5.70 -51.93 -0.30 1.86 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.52 6.34 -51.93 -0.33 0.19 16 45 H 0.07 1.53 6.97 -51.93 -0.36 1.17 16 46 H 0.01 0.36 6.43 -51.93 -0.33 0.03 16 47 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.02 0.32 7.68 -51.93 -0.40 -0.08 16 50 H 0.07 1.23 6.09 -51.93 -0.32 0.92 16 51 H 0.12 1.18 6.32 -52.49 -0.33 0.85 16 52 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -29.06 388.83 -11.29 -40.35 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -8.93 Total: 0.78 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -2.57 Total: -19.04 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.63 Total: -44.61 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.06 -11.29 -40.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552209.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.811 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds