Wall clock time and date at job start Tue Mar 31 2020 10:53:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38285 * 119.92728 * 2 1
4 4 C 1.38094 * 120.07790 * 179.97438 * 3 2 1
5 5 C 1.38915 * 119.92477 * 359.97438 * 4 3 2
6 6 N 1.39672 * 120.07444 * 179.97438 * 5 4 3
7 7 C 1.46498 * 119.99893 * 174.34158 * 6 5 4
8 8 C 1.46503 * 120.00075 * 354.33975 * 6 5 4
9 9 H 1.08997 * 109.50063 * 1.48894 * 8 6 5
10 10 C 1.53117 * 109.50377 * 121.61237 * 8 6 5
11 11 C 1.53119 * 109.16193 * 177.59609 * 10 8 6
12 12 C 1.53035 * 109.27758 * 302.34444 * 11 10 8
13 13 N 1.46847 * 109.52601 * 59.17864 * 12 11 10
14 14 C 1.46898 * 111.00292 * 174.16001 * 13 12 11
15 15 H 1.09004 * 109.46583 * 66.75573 * 14 13 12
16 16 C 1.52995 * 109.47244 * 186.75620 * 14 13 12
17 17 C 1.52998 * 109.47109 * 306.76152 * 14 13 12
18 18 C 1.50700 * 109.46800 * 303.87619 * 17 14 13
19 19 H 1.08000 * 120.00233 * 4.51050 * 18 17 14
20 20 C 1.37880 * 119.99913 * 184.51751 * 18 17 14
21 21 N 1.31510 * 120.00321 * 359.97438 * 20 18 17
22 22 Si 1.86801 * 119.99935 * 179.97438 * 20 18 17
23 23 H 1.48502 * 109.47215 * 89.99629 * 22 20 18
24 24 H 1.48493 * 109.47347 * 209.99622 * 22 20 18
25 25 H 1.48500 * 109.47310 * 329.99910 * 22 20 18
26 26 C 1.46847 * 111.19693 * 298.26166 * 13 12 11
27 27 C 1.38911 * 119.85007 * 0.25142 * 5 4 3
28 28 C 1.38108 * 119.92160 * 359.51871 * 27 5 4
29 29 H 1.09000 * 109.47127 * 90.00305 * 1 2 3
30 30 H 1.09000 * 109.46958 * 210.00362 * 1 2 3
31 31 H 1.09002 * 109.47438 * 330.00617 * 1 2 3
32 32 H 1.08005 * 119.95756 * 0.02562 * 3 2 1
33 33 H 1.08005 * 120.03954 * 179.97438 * 4 3 2
34 34 H 1.09004 * 109.47280 * 89.99758 * 7 6 5
35 35 H 1.09003 * 109.46962 * 209.99335 * 7 6 5
36 36 H 1.08993 * 109.47372 * 330.00139 * 7 6 5
37 37 H 1.09000 * 109.51931 * 297.49995 * 10 8 6
38 38 H 1.09000 * 109.52701 * 57.68762 * 10 8 6
39 39 H 1.09001 * 109.50401 * 182.39890 * 11 10 8
40 40 H 1.09006 * 109.53506 * 62.30263 * 11 10 8
41 41 H 1.08999 * 109.46197 * 299.16403 * 12 11 10
42 42 H 1.09002 * 109.46178 * 179.19519 * 12 11 10
43 43 H 1.09003 * 109.46887 * 180.02562 * 16 14 13
44 44 H 1.09006 * 109.47129 * 299.99872 * 16 14 13
45 45 H 1.08995 * 109.47454 * 60.00201 * 16 14 13
46 46 H 1.08996 * 109.47731 * 63.87573 * 17 14 13
47 47 H 1.09001 * 109.46926 * 183.87896 * 17 14 13
48 48 H 0.96997 * 120.00199 * 180.02562 * 21 20 18
49 49 H 1.09002 * 109.45868 * 301.72024 * 26 13 12
50 50 H 1.09001 * 109.45958 * 181.76120 * 26 13 12
51 51 H 1.07994 * 120.03938 * 179.75128 * 27 5 4
52 52 H 1.07995 * 119.95944 * 180.23484 * 28 27 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1969 1.1985 0.0000
4 6 3.5779 1.2021 0.0005
5 6 4.2740 0.0000 0.0016
6 7 5.6707 0.0000 0.0016
7 6 6.4032 -1.2624 0.1278
8 6 6.4033 1.2624 -0.1247
9 1 5.6957 2.0896 -0.1806
10 6 7.3140 1.4489 1.0920
11 6 8.1198 2.7400 0.9234
12 6 8.9233 2.6680 -0.3770
13 7 8.0071 2.4901 -1.5108
14 6 8.7305 2.5553 -2.7876
15 1 9.3984 1.6979 -2.8709
16 6 7.7282 2.5354 -3.9433
17 6 9.5491 3.8467 -2.8445
18 6 8.6381 5.0285 -2.6339
19 1 7.5948 4.8718 -2.4030
20 6 9.1366 6.3100 -2.7361
21 7 10.4071 6.5010 -3.0169
22 14 8.0072 7.7750 -2.4757
23 1 8.0113 8.1541 -1.0399
24 1 8.4855 8.9199 -3.2913
25 1 6.6268 7.4155 -2.8887
26 6 7.2565 1.2333 -1.3948
27 6 3.5779 -1.2021 -0.0031
28 6 2.1968 -1.1985 0.0011
29 1 -0.3633 -0.0001 -1.0277
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3634 0.8900 0.5137
32 1 1.6550 2.1327 0.0004
33 1 4.1161 2.1385 0.0001
34 1 6.5849 -1.6778 -0.8634
35 1 7.3557 -1.0816 0.6261
36 1 5.8142 -1.9672 0.7146
37 1 6.7069 1.5137 1.9949
38 1 7.9955 0.6018 1.1702
39 1 8.8012 2.8564 1.7663
40 1 7.4402 3.5914 0.8847
41 1 9.6128 1.8251 -0.3317
42 1 9.4871 3.5917 -0.5072
43 1 8.2651 2.5833 -4.8907
44 1 7.1451 1.6153 -3.9027
45 1 7.0604 3.3928 -3.8600
46 1 10.3091 3.8300 -2.0634
47 1 10.0312 3.9286 -3.8187
48 1 10.7578 7.4025 -3.0884
49 1 7.9539 0.3971 -1.3447
50 1 6.6098 1.1150 -2.2642
51 1 4.1160 -2.1384 -0.0064
52 1 1.6551 -2.1327 0.0013
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000839552209.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:53:45
Heat of formation + Delta-G solvation = 31.458876 kcal
Electronic energy + Delta-G solvation = -27494.543518 eV
Core-core repulsion = 24072.539714 eV
Total energy + Delta-G solvation = -3422.003804 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-40.01804 -38.73326 -36.51379 -34.26294 -32.37279 -31.75815 -31.14762 -29.97256
-29.36867 -27.49191 -26.90358 -24.93899 -24.19634 -22.94698 -22.56273 -21.83667
-20.51964 -19.21207 -19.04209 -17.41403 -16.44178 -15.86284 -15.28036 -15.00559
-14.80296 -14.44951 -14.35916 -14.26282 -13.91975 -13.71898 -13.65731 -13.37880
-13.22479 -12.95732 -12.81890 -12.41390 -12.19300 -12.13258 -12.08935 -12.00295
-11.48120 -11.20630 -11.17196 -11.02300 -10.92122 -10.84161 -10.68190 -10.59006
-10.43038 -10.23059 -10.08120 -9.83919 -9.44990 -9.11540 -8.97676 -8.88389
-8.26626 -7.50742 -7.14232 -5.90045 -3.87659 1.48577 1.61862 3.09375
3.38237 3.44897 3.49170 3.88860 4.52155 4.57604 4.79980 4.85919
4.95943 5.02107 5.09201 5.13632 5.28748 5.30394 5.40044 5.45292
5.46625 5.50457 5.54539 5.56085 5.65883 5.67764 5.78246 5.83978
5.91508 5.94314 5.94431 6.00193 6.05598 6.11956 6.16965 6.20949
6.28230 6.35691 6.38202 6.48518 6.56862 6.66115 6.74050 6.79880
6.91899 6.94515 7.15553 7.31888 7.54109 7.58523 7.67152 7.92268
7.97798 8.12600 8.57791 9.20899 9.74700 11.22037
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.014575 B = 0.003463 C = 0.003126
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1920.692536 B = 8083.591683 C = 8955.239744
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C -0.155 4.155
3 C -0.071 4.071
4 C -0.192 4.192
5 C 0.219 3.781
6 N -0.624 5.624
7 C 0.093 3.907
8 C 0.152 3.848
9 H 0.100 0.900
10 C -0.127 4.127
11 C -0.112 4.112
12 C 0.056 3.944
13 N -0.509 5.509
14 C 0.092 3.908
15 H 0.009 0.991
16 C -0.131 4.131
17 C 0.024 3.976
18 C -0.486 4.486
19 H 0.068 0.932
20 C 0.050 3.950
21 N -0.905 5.905
22 Si 0.888 3.112
23 H -0.283 1.283
24 H -0.291 1.291
25 H -0.275 1.275
26 C 0.045 3.955
27 C -0.199 4.199
28 C -0.074 4.074
29 H 0.061 0.939
30 H 0.058 0.942
31 H 0.059 0.941
32 H 0.118 0.882
33 H 0.127 0.873
34 H 0.045 0.955
35 H 0.066 0.934
36 H 0.064 0.936
37 H 0.060 0.940
38 H 0.057 0.943
39 H 0.063 0.937
40 H 0.074 0.926
41 H 0.015 0.985
42 H 0.102 0.898
43 H 0.049 0.951
44 H 0.030 0.970
45 H 0.072 0.928
46 H 0.014 0.986
47 H 0.023 0.977
48 H 0.257 0.743
49 H 0.021 0.979
50 H 0.075 0.925
51 H 0.118 0.882
52 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.599 -15.951 8.047 21.861
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.157 4.157
3 C -0.089 4.089
4 C -0.214 4.214
5 C 0.117 3.883
6 N -0.334 5.334
7 C -0.050 4.050
8 C 0.049 3.951
9 H 0.118 0.882
10 C -0.166 4.166
11 C -0.151 4.151
12 C -0.072 4.072
13 N -0.234 5.234
14 C -0.016 4.016
15 H 0.027 0.973
16 C -0.189 4.189
17 C -0.013 4.013
18 C -0.524 4.524
19 H 0.086 0.914
20 C -0.149 4.149
21 N -0.545 5.545
22 Si 0.716 3.284
23 H -0.210 1.210
24 H -0.217 1.217
25 H -0.200 1.200
26 C -0.084 4.084
27 C -0.222 4.222
28 C -0.093 4.093
29 H 0.080 0.920
30 H 0.077 0.923
31 H 0.078 0.922
32 H 0.136 0.864
33 H 0.144 0.856
34 H 0.063 0.937
35 H 0.085 0.915
36 H 0.082 0.918
37 H 0.079 0.921
38 H 0.076 0.924
39 H 0.082 0.918
40 H 0.093 0.907
41 H 0.033 0.967
42 H 0.120 0.880
43 H 0.068 0.932
44 H 0.049 0.951
45 H 0.091 0.909
46 H 0.032 0.968
47 H 0.041 0.959
48 H 0.066 0.934
49 H 0.039 0.961
50 H 0.093 0.907
51 H 0.136 0.864
52 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -12.604 -15.437 8.012 21.479
hybrid contribution 0.232 0.128 0.074 0.275
sum -12.371 -15.309 8.087 21.279
Atomic orbital electron populations
1.20633 0.91805 1.01966 1.01590 1.19622 0.95650 0.93149 1.07296
1.20775 0.93390 0.97312 0.97450 1.20821 0.94314 0.96818 1.09467
1.17851 0.83057 0.93830 0.93524 1.46563 1.01842 1.06369 1.78649
1.21565 0.96848 0.85885 1.00740 1.21110 0.93950 0.85613 0.94460
0.88209 1.21964 0.98338 0.98644 0.97629 1.21547 0.99035 0.97155
0.97344 1.22141 0.93686 1.01839 0.89551 1.61779 1.27986 1.31230
1.02452 1.21722 0.93806 0.98521 0.87528 0.97311 1.21761 0.99331
1.00655 0.97110 1.19290 0.94437 0.90390 0.97223 1.21186 0.96282
0.89680 1.45300 0.91393 1.25030 0.94869 0.99001 0.96046 1.69964
1.12977 1.21197 1.50408 0.86660 0.81221 0.82609 0.77878 1.20967
1.21708 1.19950 1.22433 0.96840 0.91589 0.97555 1.20614 0.94245
0.96244 1.11069 1.20696 0.93322 0.97143 0.98123 0.92035 0.92306
0.92163 0.86383 0.85571 0.93686 0.91494 0.91754 0.92105 0.92421
0.91803 0.90739 0.96702 0.87955 0.93220 0.95108 0.90861 0.96804
0.95916 0.93353 0.96111 0.90715 0.86386 0.86671
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.87 10.01 36.01 0.36 -0.51 16
2 C -0.16 -1.72 5.88 -104.59 -0.62 -2.33 16
3 C -0.07 -0.84 9.69 -39.62 -0.38 -1.22 16
4 C -0.19 -2.52 9.30 -39.38 -0.37 -2.89 16
5 C 0.22 2.84 6.54 -83.79 -0.55 2.29 16
6 N -0.62 -7.79 2.90 -171.90 -0.50 -8.29 16
7 C 0.09 0.95 9.15 59.85 0.55 1.50 16
8 C 0.15 2.11 2.63 -67.85 -0.18 1.93 16
9 H 0.10 1.50 5.32 -51.93 -0.28 1.22 16
10 C -0.13 -1.65 5.28 -26.61 -0.14 -1.80 16
11 C -0.11 -1.66 6.09 -26.65 -0.16 -1.83 16
12 C 0.06 0.99 5.00 -3.84 -0.02 0.97 16
13 N -0.51 -9.44 3.81 -226.70 -0.86 -10.31 16
14 C 0.09 1.87 2.34 -67.72 -0.16 1.71 16
15 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16
16 C -0.13 -2.50 8.84 37.16 0.33 -2.18 16
17 C 0.02 0.58 4.17 -27.88 -0.12 0.47 16
18 C -0.49 -13.02 7.53 -34.44 -0.26 -13.27 16
19 H 0.07 1.83 6.88 -52.49 -0.36 1.47 16
20 C 0.05 1.40 5.46 -17.82 -0.10 1.30 16
21 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16
22 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16
23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
25 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16
26 C 0.05 0.71 4.58 -3.83 -0.02 0.69 16
27 C -0.20 -2.31 9.16 -39.38 -0.36 -2.67 16
28 C -0.07 -0.80 9.69 -39.61 -0.38 -1.19 16
29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16
31 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16
32 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16
33 H 0.13 1.68 5.76 -52.48 -0.30 1.38 16
34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16
35 H 0.07 0.66 6.31 -51.93 -0.33 0.33 16
36 H 0.06 0.56 6.46 -51.93 -0.34 0.23 16
37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
38 H 0.06 0.72 6.52 -51.93 -0.34 0.38 16
39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16
41 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16
42 H 0.10 2.15 5.70 -51.93 -0.30 1.86 16
43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
44 H 0.03 0.52 6.34 -51.93 -0.33 0.19 16
45 H 0.07 1.53 6.97 -51.93 -0.36 1.17 16
46 H 0.01 0.36 6.43 -51.93 -0.33 0.03 16
47 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16
48 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
49 H 0.02 0.32 7.68 -51.93 -0.40 -0.08 16
50 H 0.07 1.23 6.09 -51.93 -0.32 0.92 16
51 H 0.12 1.18 6.32 -52.49 -0.33 0.85 16
52 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16
LS Contribution 388.83 15.07 5.86 5.86
Total: -1.00 -29.06 388.83 -11.29 -40.35
By element:
Atomic # 1 Polarization: 9.71 SS G_CDS: -8.93 Total: 0.78 kcal
Atomic # 6 Polarization: -16.47 SS G_CDS: -2.57 Total: -19.04 kcal
Atomic # 7 Polarization: -43.99 SS G_CDS: -0.63 Total: -44.61 kcal
Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -29.06 -11.29 -40.35 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000839552209.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.811 kcal
(2) G-P(sol) polarization free energy of solvation -29.061 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.750 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.291 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.459 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds