Wall clock time and date at job start Tue Mar 31 2020 10:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38285 * 119.92728 * 2 1 4 4 C 1.38094 * 120.07790 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.92477 * 359.97438 * 4 3 2 6 6 N 1.39672 * 120.07444 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99893 * 174.34158 * 6 5 4 8 8 C 1.46503 * 120.00075 * 354.33975 * 6 5 4 9 9 H 1.08997 * 109.50063 * 1.48894 * 8 6 5 10 10 C 1.53117 * 109.50377 * 121.61237 * 8 6 5 11 11 C 1.53119 * 109.16193 * 177.59609 * 10 8 6 12 12 C 1.53035 * 109.27758 * 302.34444 * 11 10 8 13 13 N 1.46847 * 109.52601 * 59.17864 * 12 11 10 14 14 C 1.46898 * 111.00292 * 174.16001 * 13 12 11 15 15 H 1.09004 * 109.46583 * 66.75573 * 14 13 12 16 16 C 1.52995 * 109.47244 * 186.75620 * 14 13 12 17 17 C 1.52998 * 109.47109 * 306.76152 * 14 13 12 18 18 C 1.50700 * 109.46800 * 303.87619 * 17 14 13 19 19 H 1.08000 * 120.00233 * 4.51050 * 18 17 14 20 20 C 1.37880 * 119.99913 * 184.51751 * 18 17 14 21 21 N 1.31510 * 120.00321 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99935 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47215 * 89.99629 * 22 20 18 24 24 H 1.48493 * 109.47347 * 209.99622 * 22 20 18 25 25 H 1.48500 * 109.47310 * 329.99910 * 22 20 18 26 26 C 1.46847 * 111.19693 * 298.26166 * 13 12 11 27 27 C 1.38911 * 119.85007 * 0.25142 * 5 4 3 28 28 C 1.38108 * 119.92160 * 359.51871 * 27 5 4 29 29 H 1.09000 * 109.47127 * 90.00305 * 1 2 3 30 30 H 1.09000 * 109.46958 * 210.00362 * 1 2 3 31 31 H 1.09002 * 109.47438 * 330.00617 * 1 2 3 32 32 H 1.08005 * 119.95756 * 0.02562 * 3 2 1 33 33 H 1.08005 * 120.03954 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47280 * 89.99758 * 7 6 5 35 35 H 1.09003 * 109.46962 * 209.99335 * 7 6 5 36 36 H 1.08993 * 109.47372 * 330.00139 * 7 6 5 37 37 H 1.09000 * 109.51931 * 297.49995 * 10 8 6 38 38 H 1.09000 * 109.52701 * 57.68762 * 10 8 6 39 39 H 1.09001 * 109.50401 * 182.39890 * 11 10 8 40 40 H 1.09006 * 109.53506 * 62.30263 * 11 10 8 41 41 H 1.08999 * 109.46197 * 299.16403 * 12 11 10 42 42 H 1.09002 * 109.46178 * 179.19519 * 12 11 10 43 43 H 1.09003 * 109.46887 * 180.02562 * 16 14 13 44 44 H 1.09006 * 109.47129 * 299.99872 * 16 14 13 45 45 H 1.08995 * 109.47454 * 60.00201 * 16 14 13 46 46 H 1.08996 * 109.47731 * 63.87573 * 17 14 13 47 47 H 1.09001 * 109.46926 * 183.87896 * 17 14 13 48 48 H 0.96997 * 120.00199 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.45868 * 301.72024 * 26 13 12 50 50 H 1.09001 * 109.45958 * 181.76120 * 26 13 12 51 51 H 1.07994 * 120.03938 * 179.75128 * 27 5 4 52 52 H 1.07995 * 119.95944 * 180.23484 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2740 0.0000 0.0016 6 7 5.6707 0.0000 0.0016 7 6 6.4032 -1.2624 0.1278 8 6 6.4033 1.2624 -0.1247 9 1 5.6957 2.0896 -0.1806 10 6 7.3140 1.4489 1.0920 11 6 8.1198 2.7400 0.9234 12 6 8.9233 2.6680 -0.3770 13 7 8.0071 2.4901 -1.5108 14 6 8.7305 2.5553 -2.7876 15 1 9.3984 1.6979 -2.8709 16 6 7.7282 2.5354 -3.9433 17 6 9.5491 3.8467 -2.8445 18 6 8.6381 5.0285 -2.6339 19 1 7.5948 4.8718 -2.4030 20 6 9.1366 6.3100 -2.7361 21 7 10.4071 6.5010 -3.0169 22 14 8.0072 7.7750 -2.4757 23 1 8.0113 8.1541 -1.0399 24 1 8.4855 8.9199 -3.2913 25 1 6.6268 7.4155 -2.8887 26 6 7.2565 1.2333 -1.3948 27 6 3.5779 -1.2021 -0.0031 28 6 2.1968 -1.1985 0.0011 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6550 2.1327 0.0004 33 1 4.1161 2.1385 0.0001 34 1 6.5849 -1.6778 -0.8634 35 1 7.3557 -1.0816 0.6261 36 1 5.8142 -1.9672 0.7146 37 1 6.7069 1.5137 1.9949 38 1 7.9955 0.6018 1.1702 39 1 8.8012 2.8564 1.7663 40 1 7.4402 3.5914 0.8847 41 1 9.6128 1.8251 -0.3317 42 1 9.4871 3.5917 -0.5072 43 1 8.2651 2.5833 -4.8907 44 1 7.1451 1.6153 -3.9027 45 1 7.0604 3.3928 -3.8600 46 1 10.3091 3.8300 -2.0634 47 1 10.0312 3.9286 -3.8187 48 1 10.7578 7.4025 -3.0884 49 1 7.9539 0.3971 -1.3447 50 1 6.6098 1.1150 -2.2642 51 1 4.1160 -2.1384 -0.0064 52 1 1.6551 -2.1327 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839552209.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:44 Heat of formation + Delta-G solvation = 17.947552 kcal Electronic energy + Delta-G solvation = -27495.129413 eV Core-core repulsion = 24072.539714 eV Total energy + Delta-G solvation = -3422.589699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05897 -39.91086 -37.68451 -35.68539 -34.29000 -32.67018 -32.05551 -31.52174 -30.51785 -28.77622 -28.21866 -26.08787 -25.68504 -24.52399 -23.58383 -22.93561 -21.57000 -20.69247 -20.31294 -18.57057 -18.13617 -17.23212 -16.52091 -16.43343 -15.94902 -15.82032 -15.63151 -15.36260 -15.07779 -14.70212 -14.64376 -14.45666 -14.42170 -14.27274 -14.13228 -13.87216 -13.66456 -13.12738 -12.96654 -12.85862 -12.81968 -12.77299 -12.67961 -12.56982 -12.48282 -12.19507 -12.13203 -12.08037 -11.70558 -11.59028 -11.39974 -11.33116 -11.00725 -10.90083 -10.45311 -10.39935 -9.76491 -8.99272 -8.07584 -8.05523 -6.10550 0.60293 0.73983 1.42823 1.43526 1.54225 2.12952 2.48914 3.00144 3.15019 3.29774 3.75673 3.88542 3.95393 4.10849 4.14837 4.20565 4.21349 4.30215 4.36660 4.37210 4.50769 4.55287 4.57505 4.62176 4.63941 4.66686 4.70773 4.76520 4.84736 4.91136 4.92436 4.95203 4.97488 5.03151 5.08920 5.12487 5.23367 5.23586 5.26344 5.29505 5.41096 5.46279 5.48770 5.55357 5.62056 5.68156 5.89275 5.91459 6.08464 6.28439 6.34110 6.48843 6.56284 6.67223 7.04272 7.55274 9.05017 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.003463 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.692536 B = 8083.591683 C = 8955.239744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.160 4.160 3 C -0.084 4.084 4 C -0.212 4.212 5 C 0.202 3.798 6 N -0.627 5.627 7 C 0.090 3.910 8 C 0.160 3.840 9 H 0.085 0.915 10 C -0.116 4.116 11 C -0.106 4.106 12 C 0.059 3.941 13 N -0.523 5.523 14 C 0.098 3.902 15 H 0.017 0.983 16 C -0.123 4.123 17 C 0.031 3.969 18 C -0.481 4.481 19 H 0.066 0.934 20 C -0.005 4.005 21 N -0.942 5.942 22 Si 0.950 3.050 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.267 1.267 26 C 0.054 3.946 27 C -0.202 4.202 28 C -0.078 4.078 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.023 0.977 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.052 0.948 46 H -0.006 1.006 47 H -0.007 1.007 48 H 0.257 0.743 49 H 0.029 0.971 50 H 0.067 0.933 51 H 0.135 0.865 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.737 -17.878 9.132 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.162 4.162 3 C -0.102 4.102 4 C -0.234 4.234 5 C 0.101 3.899 6 N -0.337 5.337 7 C -0.052 4.052 8 C 0.055 3.945 9 H 0.103 0.897 10 C -0.154 4.154 11 C -0.144 4.144 12 C -0.069 4.069 13 N -0.248 5.248 14 C -0.010 4.010 15 H 0.035 0.965 16 C -0.180 4.180 17 C -0.006 4.006 18 C -0.520 4.520 19 H 0.084 0.916 20 C -0.200 4.200 21 N -0.585 5.585 22 Si 0.777 3.223 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.192 1.192 26 C -0.075 4.075 27 C -0.224 4.224 28 C -0.097 4.097 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.012 0.988 47 H 0.012 0.988 48 H 0.066 0.934 49 H 0.047 0.953 50 H 0.086 0.914 51 H 0.153 0.847 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.766 -17.387 9.106 24.561 hybrid contribution 0.871 0.671 -0.272 1.133 sum -13.895 -16.716 8.834 23.463 Atomic orbital electron populations 1.20672 0.89971 1.02985 1.02251 1.19981 0.97131 0.92897 1.06226 1.20991 0.93177 0.98372 0.97674 1.20885 0.95016 0.96740 1.10784 1.18025 0.83273 0.94255 0.94353 1.46516 1.01798 1.06388 1.78987 1.21705 0.97151 0.85156 1.01225 1.20873 0.93519 0.86272 0.93788 0.89687 1.21859 0.98149 0.97803 0.97606 1.21484 0.98928 0.97815 0.96197 1.22036 0.93970 1.00081 0.90776 1.61708 1.27978 1.33434 1.01718 1.21499 0.93961 0.96191 0.89306 0.96540 1.21659 0.98768 1.01016 0.96578 1.19135 0.94249 0.92539 0.94722 1.21382 0.96235 0.90380 1.43955 0.91625 1.25807 0.96158 1.01886 0.96172 1.70092 1.14718 1.21687 1.51972 0.85662 0.79541 0.79226 0.77891 1.20352 1.21614 1.19163 1.22392 0.96538 0.90180 0.98429 1.20861 0.94746 0.96354 1.10425 1.21046 0.93294 0.98122 0.97207 0.91458 0.90879 0.91635 0.85521 0.86733 0.93539 0.90959 0.90114 0.91000 0.91140 0.90061 0.92221 0.95892 0.91950 0.93125 0.92517 0.92928 0.98784 0.98822 0.93439 0.95312 0.91445 0.84748 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 10.01 71.24 0.71 -0.76 16 2 C -0.16 -3.22 5.88 -19.84 -0.12 -3.34 16 3 C -0.08 -1.91 9.69 22.25 0.22 -1.70 16 4 C -0.21 -5.46 9.30 22.40 0.21 -5.26 16 5 C 0.20 4.93 6.54 38.22 0.25 5.18 16 6 N -0.63 -14.49 2.90 -697.78 -2.02 -16.51 16 7 C 0.09 1.59 9.15 127.77 1.17 2.76 16 8 C 0.16 4.24 2.63 45.04 0.12 4.36 16 9 H 0.09 2.54 5.32 -2.39 -0.01 2.53 16 10 C -0.12 -2.80 5.28 30.67 0.16 -2.63 16 11 C -0.11 -3.06 6.09 30.65 0.19 -2.87 16 12 C 0.06 2.12 5.00 86.32 0.43 2.55 16 13 N -0.52 -19.42 3.81 -871.13 -3.32 -22.74 16 14 C 0.10 4.05 2.34 44.91 0.11 4.15 16 15 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 16 C -0.12 -4.67 8.84 71.98 0.64 -4.03 16 17 C 0.03 1.58 4.17 29.85 0.12 1.70 16 18 C -0.48 -26.45 7.53 25.60 0.19 -26.26 16 19 H 0.07 3.59 6.88 -2.91 -0.02 3.57 16 20 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 21 N -0.94 -57.33 13.29 21.45 0.28 -57.04 16 22 Si 0.95 45.18 29.54 68.60 2.03 47.21 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 C 0.05 1.62 4.58 86.33 0.40 2.02 16 27 C -0.20 -4.18 9.16 22.40 0.21 -3.98 16 28 C -0.08 -1.49 9.69 22.25 0.22 -1.27 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 32 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 33 H 0.11 3.13 5.76 -2.91 -0.02 3.11 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.20 6.31 -2.39 -0.02 1.18 16 36 H 0.08 1.16 6.46 -2.39 -0.02 1.14 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.55 6.52 -2.39 -0.02 1.54 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 2.73 5.70 -2.39 -0.01 2.72 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 1.84 6.34 -2.38 -0.02 1.83 16 45 H 0.05 2.20 6.97 -2.39 -0.02 2.19 16 46 H -0.01 -0.33 6.43 -2.39 -0.02 -0.35 16 47 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 48 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 49 H 0.03 0.84 7.68 -2.39 -0.02 0.82 16 50 H 0.07 2.14 6.09 -2.39 -0.01 2.12 16 51 H 0.13 2.26 6.32 -2.91 -0.02 2.24 16 52 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -63.56 388.83 3.53 -60.03 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.88 Total: 18.20 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 5.67 Total: -29.16 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -5.06 Total: -96.29 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -63.56 3.53 -60.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552209.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.981 kcal (2) G-P(sol) polarization free energy of solvation -63.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds