Wall clock time and date at job start Tue Mar 31 2020 11:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47232 * 2 1 4 4 C 1.53001 * 109.47679 * 120.00119 * 2 1 3 5 5 C 1.50696 * 109.47491 * 183.35468 * 4 2 1 6 6 H 1.08000 * 119.99699 * 5.01968 * 5 4 2 7 7 C 1.37875 * 120.00205 * 185.00581 * 5 4 2 8 8 N 1.31516 * 119.99859 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00119 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47040 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46710 * 120.00462 * 9 7 5 12 12 H 1.48500 * 109.46998 * 240.00397 * 9 7 5 13 13 N 1.46900 * 109.46972 * 240.00457 * 2 1 3 14 14 C 1.46848 * 111.00180 * 308.97389 * 13 2 1 15 15 C 1.53036 * 109.52447 * 185.83913 * 14 13 2 16 16 C 1.53112 * 109.28114 * 300.82026 * 15 14 13 17 17 C 1.50696 * 109.52276 * 177.56136 * 16 15 14 18 18 C 1.38282 * 119.92739 * 120.12993 * 17 16 15 19 19 C 1.38097 * 120.07725 * 180.02562 * 18 17 16 20 20 C 1.38904 * 119.92681 * 359.97438 * 19 18 17 21 21 N 1.39680 * 120.07808 * 179.97438 * 20 19 18 22 22 C 1.46494 * 119.99698 * 354.32570 * 21 20 19 23 23 C 1.46496 * 119.99978 * 174.32744 * 21 20 19 24 24 C 1.38912 * 119.84903 * 0.25508 * 20 19 18 25 25 C 1.38103 * 119.92361 * 359.51377 * 24 20 19 26 26 C 1.53122 * 109.21105 * 57.62066 * 16 15 14 27 27 C 1.46842 * 111.00207 * 73.18470 * 13 2 1 28 28 H 1.09001 * 109.47659 * 59.99453 * 1 2 3 29 29 H 1.09005 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47288 * 299.99432 * 1 2 3 31 31 H 1.09001 * 109.47047 * 303.36189 * 4 2 1 32 32 H 1.09007 * 109.46583 * 63.36031 * 4 2 1 33 33 H 0.97001 * 119.99998 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.46221 * 65.81772 * 14 13 2 35 35 H 1.09008 * 109.45107 * 305.85334 * 14 13 2 36 36 H 1.08997 * 109.49793 * 180.87484 * 15 14 13 37 37 H 1.09000 * 109.50022 * 60.76378 * 15 14 13 38 38 H 1.08999 * 109.52181 * 297.68864 * 16 15 14 39 39 H 1.08002 * 119.95967 * 359.97219 * 18 17 16 40 40 H 1.08003 * 120.03774 * 179.97438 * 19 18 17 41 41 H 1.08992 * 109.47544 * 5.07512 * 22 21 20 42 42 H 1.08997 * 109.47158 * 125.07798 * 22 21 20 43 43 H 1.09010 * 109.47221 * 245.07470 * 22 21 20 44 44 H 1.09004 * 109.47082 * 90.00003 * 23 21 20 45 45 H 1.09006 * 109.47121 * 209.99514 * 23 21 20 46 46 H 1.08996 * 109.47583 * 329.99894 * 23 21 20 47 47 H 1.08000 * 120.03965 * 179.75120 * 24 20 19 48 48 H 1.08007 * 119.96325 * 180.22853 * 25 24 20 49 49 H 1.08999 * 109.50174 * 62.32275 * 26 16 15 50 50 H 1.09001 * 109.49911 * 182.43898 * 26 16 15 51 51 H 1.08997 * 109.46451 * 294.17565 * 27 13 2 52 52 H 1.09001 * 109.46223 * 54.14433 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5447 -0.6496 1.2914 6 1 4.0788 -0.0725 0.5511 7 6 4.2395 -1.3207 2.2753 8 7 3.5891 -2.0237 3.1766 9 14 6.1047 -1.2313 2.3280 10 1 6.5913 -0.3816 1.2116 11 1 6.5355 -0.6428 3.6216 12 1 6.6697 -2.5979 2.1932 13 7 2.0195 -0.6924 -1.1995 14 6 1.3820 -2.0072 -1.3453 15 6 2.0190 -2.7573 -2.5174 16 6 1.8409 -1.9381 -3.7986 17 6 2.5182 -2.6431 -4.9453 18 6 1.7799 -3.0356 -6.0467 19 6 2.3974 -3.6824 -7.0991 20 6 3.7618 -3.9381 -7.0507 21 7 4.3895 -4.5926 -8.1131 22 6 3.5915 -5.1203 -9.2225 23 6 5.8459 -4.7513 -8.1180 24 6 4.4997 -3.5468 -5.9407 25 6 3.8768 -2.8962 -4.8939 26 6 2.4700 -0.5557 -3.6043 27 6 1.8211 0.1300 -2.3998 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6284 -0.2434 2.1382 32 1 1.7267 -1.7649 1.2195 33 1 4.0779 -2.4961 3.8686 34 1 0.3167 -1.8753 -1.5344 35 1 1.5198 -2.5811 -0.4288 36 1 1.5349 -3.7268 -2.6350 37 1 3.0816 -2.9018 -2.3225 38 1 0.7784 -1.8275 -4.0155 39 1 0.7190 -2.8369 -6.0836 40 1 1.8201 -3.9890 -7.9589 41 1 2.5490 -4.8310 -9.0900 42 1 3.9642 -4.7150 -10.1632 43 1 3.6675 -6.2076 -9.2399 44 1 6.1111 -5.6862 -7.6242 45 1 6.2060 -4.7688 -9.1467 46 1 6.3041 -3.9171 -7.5867 47 1 5.5600 -3.7477 -5.8981 48 1 4.4505 -2.5883 -4.0321 49 1 3.5400 -0.6645 -3.4271 50 1 2.3080 0.0467 -4.4981 51 1 0.7537 0.2519 -2.5841 52 1 2.2776 1.1083 -2.2493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839562668.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:22 Heat of formation + Delta-G solvation = 29.122957 kcal Electronic energy + Delta-G solvation = -26874.043047 eV Core-core repulsion = 23451.937950 eV Total energy + Delta-G solvation = -3422.105097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.98154 -38.74261 -36.68600 -34.54174 -32.49257 -31.18295 -30.72342 -30.28323 -28.45974 -28.30634 -27.21510 -25.20068 -23.40427 -22.86016 -22.52210 -22.29213 -20.54312 -19.43961 -18.45385 -17.54846 -16.10161 -15.86378 -15.66216 -15.29463 -14.98676 -14.50371 -14.44889 -14.20590 -13.99805 -13.65387 -13.54047 -13.42890 -13.00568 -12.84660 -12.74191 -12.33440 -12.29777 -12.15691 -12.10101 -11.88645 -11.71001 -11.54388 -11.32830 -11.00475 -10.86988 -10.78502 -10.48497 -10.43047 -10.30246 -10.22371 -9.91526 -9.74507 -9.52854 -9.08149 -8.87782 -8.84885 -8.20367 -7.32614 -7.26634 -5.83073 -3.79874 1.50954 1.64091 2.96595 3.41689 3.49042 3.54670 3.91463 4.60626 4.63483 4.67319 4.75665 4.97068 5.00100 5.04080 5.06855 5.25109 5.31125 5.34736 5.37722 5.43277 5.51105 5.54275 5.58275 5.64757 5.68822 5.80838 5.85264 5.88050 5.94368 6.00911 6.07373 6.12363 6.14550 6.17305 6.25898 6.30933 6.39642 6.48693 6.54980 6.57911 6.68669 6.74401 6.82847 6.90591 6.96673 7.08551 7.11056 7.42060 7.62756 7.77920 8.03282 8.13410 8.19649 8.65184 9.25716 9.81144 11.29133 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.003098 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.343078 B = 9035.265658 C =10408.714759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.066 0.934 4 C 0.030 3.970 5 C -0.483 4.483 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.508 5.508 14 C 0.058 3.942 15 C -0.105 4.105 16 C -0.041 4.041 17 C -0.121 4.121 18 C -0.073 4.073 19 C -0.200 4.200 20 C 0.202 3.798 21 N -0.643 5.643 22 C 0.092 3.908 23 C 0.096 3.904 24 C -0.193 4.193 25 C -0.062 4.062 26 C -0.104 4.104 27 C 0.054 3.946 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.022 0.978 33 H 0.256 0.744 34 H 0.022 0.978 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.119 0.881 48 H 0.125 0.875 49 H 0.072 0.928 50 H 0.057 0.943 51 H 0.021 0.979 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 -3.820 -23.814 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.007 4.007 5 C -0.522 4.522 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.232 5.232 14 C -0.070 4.070 15 C -0.143 4.143 16 C -0.059 4.059 17 C -0.123 4.123 18 C -0.092 4.092 19 C -0.222 4.222 20 C 0.102 3.898 21 N -0.357 5.357 22 C -0.051 4.051 23 C -0.047 4.047 24 C -0.215 4.215 25 C -0.080 4.080 26 C -0.142 4.142 27 C -0.074 4.074 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.137 0.863 48 H 0.143 0.857 49 H 0.090 0.910 50 H 0.076 0.924 51 H 0.039 0.961 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.915 -4.088 -23.763 24.187 hybrid contribution 0.198 -0.004 -0.064 0.208 sum -1.717 -4.092 -23.826 24.236 Atomic orbital electron populations 1.22518 0.99895 1.01315 1.00465 1.21897 0.89953 0.98132 0.92139 0.91549 1.19193 0.96350 0.95526 0.89669 1.21177 0.91563 1.28697 1.10719 0.92238 1.24994 0.97904 0.95989 0.96080 1.69975 1.34951 1.33276 1.16446 0.86599 0.86689 0.77544 0.77526 1.19798 1.21520 1.21373 1.62015 1.57669 1.02240 1.01239 1.22067 0.94499 0.91478 0.98960 1.21651 1.02399 0.97294 0.92966 1.20117 0.98399 0.94715 0.92690 1.19707 0.93889 1.02404 0.96263 1.20786 0.99089 0.96621 0.92655 1.20615 0.93077 1.07614 1.00888 1.17810 0.91897 0.92431 0.87626 1.46229 1.05623 1.62476 1.21368 1.21641 0.96683 0.98141 0.88677 1.21563 0.80029 1.01346 1.01784 1.20667 0.99729 1.06727 0.94375 1.20872 0.94241 0.95583 0.97354 1.21629 1.01103 0.94752 0.96705 1.22066 0.97382 0.96929 0.91059 0.94296 0.92792 0.92731 0.96825 0.95964 0.93474 0.96014 0.89670 0.92358 0.90807 0.91581 0.86511 0.86359 0.90441 0.92969 0.93310 0.93609 0.91882 0.91325 0.86337 0.85666 0.90972 0.92441 0.96077 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.39 37.15 0.31 -2.89 16 2 C 0.09 1.79 2.26 -67.72 -0.15 1.63 16 3 H 0.07 1.39 7.92 -51.93 -0.41 0.98 16 4 C 0.03 0.76 4.40 -27.88 -0.12 0.64 16 5 C -0.48 -13.60 8.79 -34.44 -0.30 -13.90 16 6 H 0.06 1.68 7.75 -52.49 -0.41 1.28 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.50 13.29 55.43 0.74 -26.77 16 9 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 N -0.51 -9.72 4.25 -226.69 -0.96 -10.68 16 14 C 0.06 1.04 4.46 -3.83 -0.02 1.02 16 15 C -0.11 -1.65 5.22 -26.65 -0.14 -1.78 16 16 C -0.04 -0.55 2.43 -91.65 -0.22 -0.78 16 17 C -0.12 -1.58 4.79 -104.59 -0.50 -2.08 16 18 C -0.07 -0.86 9.66 -39.62 -0.38 -1.24 16 19 C -0.20 -2.25 9.31 -39.39 -0.37 -2.61 16 20 C 0.20 2.36 6.54 -83.79 -0.55 1.81 16 21 N -0.64 -6.19 3.41 -187.56 -0.64 -6.83 16 22 C 0.09 0.65 10.62 59.84 0.64 1.28 16 23 C 0.10 0.73 10.09 59.84 0.60 1.33 16 24 C -0.19 -2.36 9.16 -39.38 -0.36 -2.72 16 25 C -0.06 -0.82 8.65 -39.61 -0.34 -1.16 16 26 C -0.10 -1.48 5.23 -26.65 -0.14 -1.62 16 27 C 0.05 0.86 5.18 -3.83 -0.02 0.84 16 28 H 0.04 0.61 6.94 -51.93 -0.36 0.25 16 29 H 0.05 0.94 6.45 -51.93 -0.33 0.61 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.60 6.41 -51.93 -0.33 0.27 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.02 0.37 6.57 -51.93 -0.34 0.02 16 35 H 0.09 1.76 6.30 -51.92 -0.33 1.43 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.27 7.30 -51.93 -0.38 0.89 16 38 H 0.07 0.86 7.87 -51.93 -0.41 0.46 16 39 H 0.12 1.19 7.94 -52.49 -0.42 0.77 16 40 H 0.12 1.09 5.74 -52.48 -0.30 0.78 16 41 H 0.08 0.52 5.31 -51.93 -0.28 0.24 16 42 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 46 H 0.07 0.52 6.47 -51.93 -0.34 0.19 16 47 H 0.12 1.29 6.32 -52.49 -0.33 0.96 16 48 H 0.13 1.70 7.05 -52.48 -0.37 1.33 16 49 H 0.07 1.11 7.30 -51.93 -0.38 0.73 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.02 0.32 6.99 -51.93 -0.36 -0.04 16 52 H 0.07 1.07 7.98 -51.93 -0.41 0.66 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -31.14 390.46 -11.17 -42.31 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -9.00 Total: -0.25 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -2.16 Total: -20.91 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.87 Total: -44.28 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.14 -11.17 -42.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839562668.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.434 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds