Wall clock time and date at job start Tue Mar 31 2020 11:41:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09005 * 109.47232 * 2 1
4 4 C 1.53001 * 109.47679 * 120.00119 * 2 1 3
5 5 C 1.50696 * 109.47491 * 183.35468 * 4 2 1
6 6 H 1.08000 * 119.99699 * 5.01968 * 5 4 2
7 7 C 1.37875 * 120.00205 * 185.00581 * 5 4 2
8 8 N 1.31516 * 119.99859 * 0.02562 * 7 5 4
9 9 Si 1.86802 * 120.00119 * 180.02562 * 7 5 4
10 10 H 1.48498 * 109.47040 * 0.02562 * 9 7 5
11 11 H 1.48498 * 109.46710 * 120.00462 * 9 7 5
12 12 H 1.48500 * 109.46998 * 240.00397 * 9 7 5
13 13 N 1.46900 * 109.46972 * 240.00457 * 2 1 3
14 14 C 1.46848 * 111.00180 * 308.97389 * 13 2 1
15 15 C 1.53036 * 109.52447 * 185.83913 * 14 13 2
16 16 C 1.53112 * 109.28114 * 300.82026 * 15 14 13
17 17 C 1.50696 * 109.52276 * 177.56136 * 16 15 14
18 18 C 1.38282 * 119.92739 * 120.12993 * 17 16 15
19 19 C 1.38097 * 120.07725 * 180.02562 * 18 17 16
20 20 C 1.38904 * 119.92681 * 359.97438 * 19 18 17
21 21 N 1.39680 * 120.07808 * 179.97438 * 20 19 18
22 22 C 1.46494 * 119.99698 * 354.32570 * 21 20 19
23 23 C 1.46496 * 119.99978 * 174.32744 * 21 20 19
24 24 C 1.38912 * 119.84903 * 0.25508 * 20 19 18
25 25 C 1.38103 * 119.92361 * 359.51377 * 24 20 19
26 26 C 1.53122 * 109.21105 * 57.62066 * 16 15 14
27 27 C 1.46842 * 111.00207 * 73.18470 * 13 2 1
28 28 H 1.09001 * 109.47659 * 59.99453 * 1 2 3
29 29 H 1.09005 * 109.47232 * 180.02562 * 1 2 3
30 30 H 1.08999 * 109.47288 * 299.99432 * 1 2 3
31 31 H 1.09001 * 109.47047 * 303.36189 * 4 2 1
32 32 H 1.09007 * 109.46583 * 63.36031 * 4 2 1
33 33 H 0.97001 * 119.99998 * 179.97438 * 8 7 5
34 34 H 1.08994 * 109.46221 * 65.81772 * 14 13 2
35 35 H 1.09008 * 109.45107 * 305.85334 * 14 13 2
36 36 H 1.08997 * 109.49793 * 180.87484 * 15 14 13
37 37 H 1.09000 * 109.50022 * 60.76378 * 15 14 13
38 38 H 1.08999 * 109.52181 * 297.68864 * 16 15 14
39 39 H 1.08002 * 119.95967 * 359.97219 * 18 17 16
40 40 H 1.08003 * 120.03774 * 179.97438 * 19 18 17
41 41 H 1.08992 * 109.47544 * 5.07512 * 22 21 20
42 42 H 1.08997 * 109.47158 * 125.07798 * 22 21 20
43 43 H 1.09010 * 109.47221 * 245.07470 * 22 21 20
44 44 H 1.09004 * 109.47082 * 90.00003 * 23 21 20
45 45 H 1.09006 * 109.47121 * 209.99514 * 23 21 20
46 46 H 1.08996 * 109.47583 * 329.99894 * 23 21 20
47 47 H 1.08000 * 120.03965 * 179.75120 * 24 20 19
48 48 H 1.08007 * 119.96325 * 180.22853 * 25 24 20
49 49 H 1.08999 * 109.50174 * 62.32275 * 26 16 15
50 50 H 1.09001 * 109.49911 * 182.43898 * 26 16 15
51 51 H 1.08997 * 109.46451 * 294.17565 * 27 13 2
52 52 H 1.09001 * 109.46223 * 54.14433 * 27 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 1.2492
5 6 3.5447 -0.6496 1.2914
6 1 4.0788 -0.0725 0.5511
7 6 4.2395 -1.3207 2.2753
8 7 3.5891 -2.0237 3.1766
9 14 6.1047 -1.2313 2.3280
10 1 6.5913 -0.3816 1.2116
11 1 6.5355 -0.6428 3.6216
12 1 6.6697 -2.5979 2.1932
13 7 2.0195 -0.6924 -1.1995
14 6 1.3820 -2.0072 -1.3453
15 6 2.0190 -2.7573 -2.5174
16 6 1.8409 -1.9381 -3.7986
17 6 2.5182 -2.6431 -4.9453
18 6 1.7799 -3.0356 -6.0467
19 6 2.3974 -3.6824 -7.0991
20 6 3.7618 -3.9381 -7.0507
21 7 4.3895 -4.5926 -8.1131
22 6 3.5915 -5.1203 -9.2225
23 6 5.8459 -4.7513 -8.1180
24 6 4.4997 -3.5468 -5.9407
25 6 3.8768 -2.8962 -4.8939
26 6 2.4700 -0.5557 -3.6043
27 6 1.8211 0.1300 -2.3998
28 1 -0.3634 0.5139 -0.8899
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3634 0.5137 0.8900
31 1 1.6284 -0.2434 2.1382
32 1 1.7267 -1.7649 1.2195
33 1 4.0779 -2.4961 3.8686
34 1 0.3167 -1.8753 -1.5344
35 1 1.5198 -2.5811 -0.4288
36 1 1.5349 -3.7268 -2.6350
37 1 3.0816 -2.9018 -2.3225
38 1 0.7784 -1.8275 -4.0155
39 1 0.7190 -2.8369 -6.0836
40 1 1.8201 -3.9890 -7.9589
41 1 2.5490 -4.8310 -9.0900
42 1 3.9642 -4.7150 -10.1632
43 1 3.6675 -6.2076 -9.2399
44 1 6.1111 -5.6862 -7.6242
45 1 6.2060 -4.7688 -9.1467
46 1 6.3041 -3.9171 -7.5867
47 1 5.5600 -3.7477 -5.8981
48 1 4.4505 -2.5883 -4.0321
49 1 3.5400 -0.6645 -3.4271
50 1 2.3080 0.0467 -4.4981
51 1 0.7537 0.2519 -2.5841
52 1 2.2776 1.1083 -2.2493
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000839562668.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:41:21
Heat of formation + Delta-G solvation = 13.106609 kcal
Electronic energy + Delta-G solvation = -26874.737568 eV
Core-core repulsion = 23451.937950 eV
Total energy + Delta-G solvation = -3422.799618 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.98662 -39.95909 -37.67890 -35.88481 -34.47428 -32.09105 -32.03473 -31.58580
-29.67318 -29.01764 -28.95314 -26.19477 -25.12776 -24.21720 -23.68806 -23.33348
-21.61928 -20.75245 -19.83678 -18.34345 -18.32686 -17.02162 -16.66639 -16.49699
-16.10193 -15.90503 -15.62177 -15.37248 -15.16263 -14.93441 -14.68140 -14.44830
-14.30522 -14.12671 -13.78405 -13.57150 -13.38768 -13.35471 -13.23560 -12.95860
-12.87634 -12.80455 -12.78153 -12.65216 -12.49784 -12.33605 -12.02501 -11.78503
-11.77583 -11.51656 -11.36759 -11.10943 -11.04124 -10.78919 -10.47810 -10.41544
-9.75554 -8.79334 -8.07676 -8.06783 -6.11399 0.60712 0.72594 1.40864
1.41921 1.55052 2.30206 2.48719 2.99711 3.17413 3.31511 3.83434
3.90005 4.06381 4.09075 4.11663 4.27464 4.28256 4.38706 4.46827
4.49848 4.52320 4.55309 4.57744 4.58400 4.60434 4.67191 4.76226
4.77650 4.83081 4.89284 4.93448 4.96104 4.99466 5.01610 5.06531
5.13701 5.23864 5.26264 5.28056 5.31230 5.33180 5.41848 5.53847
5.57914 5.64295 5.74165 5.92634 5.97727 6.02478 6.37744 6.40598
6.56482 6.61556 6.63383 7.02171 7.53661 9.04712
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.014517 B = 0.003098 C = 0.002689
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1928.343078 B = 9035.265658 C =10408.714759
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.094 3.906
3 H 0.063 0.937
4 C 0.036 3.964
5 C -0.491 4.491
6 H 0.055 0.945
7 C -0.006 4.006
8 N -0.941 5.941
9 Si 0.954 3.046
10 H -0.265 1.265
11 H -0.282 1.282
12 H -0.284 1.284
13 N -0.531 5.531
14 C 0.064 3.936
15 C -0.098 4.098
16 C -0.029 4.029
17 C -0.135 4.135
18 C -0.072 4.072
19 C -0.204 4.204
20 C 0.198 3.802
21 N -0.649 5.649
22 C 0.086 3.914
23 C 0.091 3.909
24 C -0.207 4.207
25 C -0.075 4.075
26 C -0.098 4.098
27 C 0.056 3.944
28 H 0.065 0.935
29 H 0.050 0.950
30 H 0.055 0.945
31 H -0.011 1.011
32 H -0.003 1.003
33 H 0.257 0.743
34 H 0.039 0.961
35 H 0.045 0.955
36 H 0.067 0.933
37 H 0.049 0.951
38 H 0.081 0.919
39 H 0.137 0.863
40 H 0.141 0.859
41 H 0.082 0.918
42 H 0.067 0.933
43 H 0.057 0.943
44 H 0.046 0.954
45 H 0.083 0.917
46 H 0.064 0.936
47 H 0.124 0.876
48 H 0.110 0.890
49 H 0.054 0.946
50 H 0.079 0.921
51 H 0.038 0.962
52 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.873 -3.650 -26.890 27.288
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C -0.014 4.014
3 H 0.081 0.919
4 C -0.002 4.002
5 C -0.529 4.529
6 H 0.073 0.927
7 C -0.202 4.202
8 N -0.584 5.584
9 Si 0.780 3.220
10 H -0.190 1.190
11 H -0.208 1.208
12 H -0.210 1.210
13 N -0.256 5.256
14 C -0.064 4.064
15 C -0.136 4.136
16 C -0.048 4.048
17 C -0.137 4.137
18 C -0.091 4.091
19 C -0.226 4.226
20 C 0.096 3.904
21 N -0.361 5.361
22 C -0.056 4.056
23 C -0.052 4.052
24 C -0.229 4.229
25 C -0.094 4.094
26 C -0.136 4.136
27 C -0.072 4.072
28 H 0.084 0.916
29 H 0.069 0.931
30 H 0.074 0.926
31 H 0.007 0.993
32 H 0.015 0.985
33 H 0.066 0.934
34 H 0.057 0.943
35 H 0.064 0.936
36 H 0.086 0.914
37 H 0.068 0.932
38 H 0.100 0.900
39 H 0.155 0.845
40 H 0.159 0.841
41 H 0.100 0.900
42 H 0.086 0.914
43 H 0.075 0.925
44 H 0.065 0.935
45 H 0.102 0.898
46 H 0.083 0.917
47 H 0.142 0.858
48 H 0.128 0.872
49 H 0.072 0.928
50 H 0.098 0.902
51 H 0.056 0.944
52 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -2.228 -3.919 -26.873 27.248
hybrid contribution 0.323 -0.107 0.837 0.904
sum -1.905 -4.026 -26.035 26.413
Atomic orbital electron populations
1.22373 0.97256 1.01588 1.01883 1.21601 0.92042 0.96991 0.90782
0.91920 1.19053 0.95218 0.94409 0.91470 1.21468 0.93027 1.28154
1.10281 0.92665 1.25829 1.02757 0.95777 0.95836 1.70102 1.36819
1.34268 1.17210 0.85554 0.80940 0.77644 0.77831 1.18958 1.20803
1.21040 1.61887 1.58588 1.03061 1.02019 1.21955 0.95617 0.90748
0.98060 1.21571 1.00687 0.97966 0.93414 1.19989 0.99260 0.93865
0.91646 1.19632 0.93766 1.03595 0.96717 1.21010 0.99986 0.95949
0.92114 1.20898 0.93080 1.07122 1.01468 1.17999 0.92343 0.92136
0.87903 1.46515 1.06561 1.61789 1.21264 1.21820 0.96718 0.98676
0.88411 1.21686 0.79185 1.01212 1.03110 1.20766 1.00250 1.07196
0.94678 1.20846 0.94674 0.96485 0.97373 1.21582 0.99879 0.95402
0.96696 1.22117 0.98585 0.96441 0.90022 0.91565 0.93061 0.92563
0.99306 0.98474 0.93385 0.94336 0.93612 0.91417 0.93179 0.90033
0.84545 0.84142 0.89993 0.91431 0.92490 0.93500 0.89808 0.91742
0.85809 0.87189 0.92754 0.90250 0.94368 0.91505
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.87 8.39 71.98 0.60 -5.27 16
2 C 0.09 3.92 2.26 44.91 0.10 4.02 16
3 H 0.06 2.63 7.92 -2.38 -0.02 2.61 16
4 C 0.04 1.90 4.40 29.85 0.13 2.03 16
5 C -0.49 -28.49 8.79 25.60 0.23 -28.26 16
6 H 0.06 3.19 7.75 -2.91 -0.02 3.17 16
7 C -0.01 -0.38 5.46 84.65 0.46 0.08 16
8 N -0.94 -58.94 13.29 21.45 0.28 -58.66 16
9 Si 0.95 46.58 29.54 68.60 2.03 48.60 16
10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16
11 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16
12 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16
13 N -0.53 -20.41 4.25 -871.12 -3.70 -24.11 16
14 C 0.06 2.32 4.46 86.33 0.39 2.70 16
15 C -0.10 -3.09 5.22 30.64 0.16 -2.93 16
16 C -0.03 -0.75 2.43 -11.46 -0.03 -0.78 16
17 C -0.14 -3.35 4.79 -19.84 -0.10 -3.45 16
18 C -0.07 -1.53 9.66 22.25 0.21 -1.31 16
19 C -0.20 -4.06 9.31 22.40 0.21 -3.85 16
20 C 0.20 4.28 6.54 38.21 0.25 4.53 16
21 N -0.65 -11.08 3.41 -747.30 -2.55 -13.63 16
22 C 0.09 0.97 10.62 127.77 1.36 2.33 16
23 C 0.09 1.22 10.09 127.77 1.29 2.51 16
24 C -0.21 -4.97 9.16 22.40 0.21 -4.76 16
25 C -0.08 -1.99 8.65 22.25 0.19 -1.80 16
26 C -0.10 -2.64 5.23 30.65 0.16 -2.48 16
27 C 0.06 1.70 5.18 86.33 0.45 2.15 16
28 H 0.07 1.90 6.94 -2.39 -0.02 1.88 16
29 H 0.05 1.76 6.45 -2.38 -0.02 1.75 16
30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
31 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16
32 H 0.00 -0.18 6.41 -2.38 -0.02 -0.19 16
33 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16
34 H 0.04 1.25 6.57 -2.39 -0.02 1.24 16
35 H 0.05 2.00 6.30 -2.38 -0.02 1.98 16
36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
37 H 0.05 1.79 7.30 -2.39 -0.02 1.77 16
38 H 0.08 1.88 7.87 -2.39 -0.02 1.86 16
39 H 0.14 2.30 7.94 -2.91 -0.02 2.27 16
40 H 0.14 2.10 5.74 -2.91 -0.02 2.09 16
41 H 0.08 0.84 5.31 -2.39 -0.01 0.82 16
42 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16
43 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16
44 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16
45 H 0.08 0.77 8.07 -2.38 -0.02 0.75 16
46 H 0.06 0.91 6.47 -2.39 -0.02 0.90 16
47 H 0.12 2.70 6.32 -2.91 -0.02 2.68 16
48 H 0.11 3.15 7.05 -2.91 -0.02 3.13 16
49 H 0.05 1.66 7.30 -2.39 -0.02 1.64 16
50 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
51 H 0.04 1.04 6.99 -2.39 -0.02 1.03 16
52 H 0.07 2.03 7.98 -2.39 -0.02 2.01 16
Total: -1.00 -68.49 390.46 3.21 -65.28
By element:
Atomic # 1 Polarization: 16.17 SS G_CDS: 0.88 Total: 17.05 kcal
Atomic # 6 Polarization: -40.81 SS G_CDS: 6.27 Total: -34.54 kcal
Atomic # 7 Polarization: -90.43 SS G_CDS: -5.97 Total: -96.40 kcal
Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal
Total: -68.49 3.21 -65.28 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000839562668.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.390 kcal
(2) G-P(sol) polarization free energy of solvation -68.494 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.896 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.283 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.107 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds