Wall clock time and date at job start Tue Mar 31 2020 11:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47232 * 2 1 4 4 C 1.53001 * 109.47679 * 120.00119 * 2 1 3 5 5 C 1.50696 * 109.47491 * 183.35468 * 4 2 1 6 6 H 1.08000 * 119.99699 * 5.01968 * 5 4 2 7 7 C 1.37875 * 120.00205 * 185.00581 * 5 4 2 8 8 N 1.31516 * 119.99859 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00119 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47040 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46710 * 120.00462 * 9 7 5 12 12 H 1.48500 * 109.46998 * 240.00397 * 9 7 5 13 13 N 1.46900 * 109.46972 * 240.00457 * 2 1 3 14 14 C 1.46848 * 111.00180 * 308.97389 * 13 2 1 15 15 C 1.53036 * 109.52447 * 185.83913 * 14 13 2 16 16 C 1.53112 * 109.28114 * 300.82026 * 15 14 13 17 17 C 1.50696 * 109.52276 * 177.56136 * 16 15 14 18 18 C 1.38282 * 119.92739 * 120.12993 * 17 16 15 19 19 C 1.38097 * 120.07725 * 180.02562 * 18 17 16 20 20 C 1.38904 * 119.92681 * 359.97438 * 19 18 17 21 21 N 1.39680 * 120.07808 * 179.97438 * 20 19 18 22 22 C 1.46494 * 119.99698 * 354.32570 * 21 20 19 23 23 C 1.46496 * 119.99978 * 174.32744 * 21 20 19 24 24 C 1.38912 * 119.84903 * 0.25508 * 20 19 18 25 25 C 1.38103 * 119.92361 * 359.51377 * 24 20 19 26 26 C 1.53122 * 109.21105 * 57.62066 * 16 15 14 27 27 C 1.46842 * 111.00207 * 73.18470 * 13 2 1 28 28 H 1.09001 * 109.47659 * 59.99453 * 1 2 3 29 29 H 1.09005 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47288 * 299.99432 * 1 2 3 31 31 H 1.09001 * 109.47047 * 303.36189 * 4 2 1 32 32 H 1.09007 * 109.46583 * 63.36031 * 4 2 1 33 33 H 0.97001 * 119.99998 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.46221 * 65.81772 * 14 13 2 35 35 H 1.09008 * 109.45107 * 305.85334 * 14 13 2 36 36 H 1.08997 * 109.49793 * 180.87484 * 15 14 13 37 37 H 1.09000 * 109.50022 * 60.76378 * 15 14 13 38 38 H 1.08999 * 109.52181 * 297.68864 * 16 15 14 39 39 H 1.08002 * 119.95967 * 359.97219 * 18 17 16 40 40 H 1.08003 * 120.03774 * 179.97438 * 19 18 17 41 41 H 1.08992 * 109.47544 * 5.07512 * 22 21 20 42 42 H 1.08997 * 109.47158 * 125.07798 * 22 21 20 43 43 H 1.09010 * 109.47221 * 245.07470 * 22 21 20 44 44 H 1.09004 * 109.47082 * 90.00003 * 23 21 20 45 45 H 1.09006 * 109.47121 * 209.99514 * 23 21 20 46 46 H 1.08996 * 109.47583 * 329.99894 * 23 21 20 47 47 H 1.08000 * 120.03965 * 179.75120 * 24 20 19 48 48 H 1.08007 * 119.96325 * 180.22853 * 25 24 20 49 49 H 1.08999 * 109.50174 * 62.32275 * 26 16 15 50 50 H 1.09001 * 109.49911 * 182.43898 * 26 16 15 51 51 H 1.08997 * 109.46451 * 294.17565 * 27 13 2 52 52 H 1.09001 * 109.46223 * 54.14433 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5447 -0.6496 1.2914 6 1 4.0788 -0.0725 0.5511 7 6 4.2395 -1.3207 2.2753 8 7 3.5891 -2.0237 3.1766 9 14 6.1047 -1.2313 2.3280 10 1 6.5913 -0.3816 1.2116 11 1 6.5355 -0.6428 3.6216 12 1 6.6697 -2.5979 2.1932 13 7 2.0195 -0.6924 -1.1995 14 6 1.3820 -2.0072 -1.3453 15 6 2.0190 -2.7573 -2.5174 16 6 1.8409 -1.9381 -3.7986 17 6 2.5182 -2.6431 -4.9453 18 6 1.7799 -3.0356 -6.0467 19 6 2.3974 -3.6824 -7.0991 20 6 3.7618 -3.9381 -7.0507 21 7 4.3895 -4.5926 -8.1131 22 6 3.5915 -5.1203 -9.2225 23 6 5.8459 -4.7513 -8.1180 24 6 4.4997 -3.5468 -5.9407 25 6 3.8768 -2.8962 -4.8939 26 6 2.4700 -0.5557 -3.6043 27 6 1.8211 0.1300 -2.3998 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6284 -0.2434 2.1382 32 1 1.7267 -1.7649 1.2195 33 1 4.0779 -2.4961 3.8686 34 1 0.3167 -1.8753 -1.5344 35 1 1.5198 -2.5811 -0.4288 36 1 1.5349 -3.7268 -2.6350 37 1 3.0816 -2.9018 -2.3225 38 1 0.7784 -1.8275 -4.0155 39 1 0.7190 -2.8369 -6.0836 40 1 1.8201 -3.9890 -7.9589 41 1 2.5490 -4.8310 -9.0900 42 1 3.9642 -4.7150 -10.1632 43 1 3.6675 -6.2076 -9.2399 44 1 6.1111 -5.6862 -7.6242 45 1 6.2060 -4.7688 -9.1467 46 1 6.3041 -3.9171 -7.5867 47 1 5.5600 -3.7477 -5.8981 48 1 4.4505 -2.5883 -4.0321 49 1 3.5400 -0.6645 -3.4271 50 1 2.3080 0.0467 -4.4981 51 1 0.7537 0.2519 -2.5841 52 1 2.2776 1.1083 -2.2493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839562668.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:21 Heat of formation + Delta-G solvation = 13.106609 kcal Electronic energy + Delta-G solvation = -26874.737568 eV Core-core repulsion = 23451.937950 eV Total energy + Delta-G solvation = -3422.799618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98662 -39.95909 -37.67890 -35.88481 -34.47428 -32.09105 -32.03473 -31.58580 -29.67318 -29.01764 -28.95314 -26.19477 -25.12776 -24.21720 -23.68806 -23.33348 -21.61928 -20.75245 -19.83678 -18.34345 -18.32686 -17.02162 -16.66639 -16.49699 -16.10193 -15.90503 -15.62177 -15.37248 -15.16263 -14.93441 -14.68140 -14.44830 -14.30522 -14.12671 -13.78405 -13.57150 -13.38768 -13.35471 -13.23560 -12.95860 -12.87634 -12.80455 -12.78153 -12.65216 -12.49784 -12.33605 -12.02501 -11.78503 -11.77583 -11.51656 -11.36759 -11.10943 -11.04124 -10.78919 -10.47810 -10.41544 -9.75554 -8.79334 -8.07676 -8.06783 -6.11399 0.60712 0.72594 1.40864 1.41921 1.55052 2.30206 2.48719 2.99711 3.17413 3.31511 3.83434 3.90005 4.06381 4.09075 4.11663 4.27464 4.28256 4.38706 4.46827 4.49848 4.52320 4.55309 4.57744 4.58400 4.60434 4.67191 4.76226 4.77650 4.83081 4.89284 4.93448 4.96104 4.99466 5.01610 5.06531 5.13701 5.23864 5.26264 5.28056 5.31230 5.33180 5.41848 5.53847 5.57914 5.64295 5.74165 5.92634 5.97727 6.02478 6.37744 6.40598 6.56482 6.61556 6.63383 7.02171 7.53661 9.04712 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.003098 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.343078 B = 9035.265658 C =10408.714759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.094 3.906 3 H 0.063 0.937 4 C 0.036 3.964 5 C -0.491 4.491 6 H 0.055 0.945 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.954 3.046 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.531 5.531 14 C 0.064 3.936 15 C -0.098 4.098 16 C -0.029 4.029 17 C -0.135 4.135 18 C -0.072 4.072 19 C -0.204 4.204 20 C 0.198 3.802 21 N -0.649 5.649 22 C 0.086 3.914 23 C 0.091 3.909 24 C -0.207 4.207 25 C -0.075 4.075 26 C -0.098 4.098 27 C 0.056 3.944 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.055 0.945 31 H -0.011 1.011 32 H -0.003 1.003 33 H 0.257 0.743 34 H 0.039 0.961 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.124 0.876 48 H 0.110 0.890 49 H 0.054 0.946 50 H 0.079 0.921 51 H 0.038 0.962 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.873 -3.650 -26.890 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.014 4.014 3 H 0.081 0.919 4 C -0.002 4.002 5 C -0.529 4.529 6 H 0.073 0.927 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.780 3.220 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.256 5.256 14 C -0.064 4.064 15 C -0.136 4.136 16 C -0.048 4.048 17 C -0.137 4.137 18 C -0.091 4.091 19 C -0.226 4.226 20 C 0.096 3.904 21 N -0.361 5.361 22 C -0.056 4.056 23 C -0.052 4.052 24 C -0.229 4.229 25 C -0.094 4.094 26 C -0.136 4.136 27 C -0.072 4.072 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.007 0.993 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.142 0.858 48 H 0.128 0.872 49 H 0.072 0.928 50 H 0.098 0.902 51 H 0.056 0.944 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.228 -3.919 -26.873 27.248 hybrid contribution 0.323 -0.107 0.837 0.904 sum -1.905 -4.026 -26.035 26.413 Atomic orbital electron populations 1.22373 0.97256 1.01588 1.01883 1.21601 0.92042 0.96991 0.90782 0.91920 1.19053 0.95218 0.94409 0.91470 1.21468 0.93027 1.28154 1.10281 0.92665 1.25829 1.02757 0.95777 0.95836 1.70102 1.36819 1.34268 1.17210 0.85554 0.80940 0.77644 0.77831 1.18958 1.20803 1.21040 1.61887 1.58588 1.03061 1.02019 1.21955 0.95617 0.90748 0.98060 1.21571 1.00687 0.97966 0.93414 1.19989 0.99260 0.93865 0.91646 1.19632 0.93766 1.03595 0.96717 1.21010 0.99986 0.95949 0.92114 1.20898 0.93080 1.07122 1.01468 1.17999 0.92343 0.92136 0.87903 1.46515 1.06561 1.61789 1.21264 1.21820 0.96718 0.98676 0.88411 1.21686 0.79185 1.01212 1.03110 1.20766 1.00250 1.07196 0.94678 1.20846 0.94674 0.96485 0.97373 1.21582 0.99879 0.95402 0.96696 1.22117 0.98585 0.96441 0.90022 0.91565 0.93061 0.92563 0.99306 0.98474 0.93385 0.94336 0.93612 0.91417 0.93179 0.90033 0.84545 0.84142 0.89993 0.91431 0.92490 0.93500 0.89808 0.91742 0.85809 0.87189 0.92754 0.90250 0.94368 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.87 8.39 71.98 0.60 -5.27 16 2 C 0.09 3.92 2.26 44.91 0.10 4.02 16 3 H 0.06 2.63 7.92 -2.38 -0.02 2.61 16 4 C 0.04 1.90 4.40 29.85 0.13 2.03 16 5 C -0.49 -28.49 8.79 25.60 0.23 -28.26 16 6 H 0.06 3.19 7.75 -2.91 -0.02 3.17 16 7 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 8 N -0.94 -58.94 13.29 21.45 0.28 -58.66 16 9 Si 0.95 46.58 29.54 68.60 2.03 48.60 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 12 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 13 N -0.53 -20.41 4.25 -871.12 -3.70 -24.11 16 14 C 0.06 2.32 4.46 86.33 0.39 2.70 16 15 C -0.10 -3.09 5.22 30.64 0.16 -2.93 16 16 C -0.03 -0.75 2.43 -11.46 -0.03 -0.78 16 17 C -0.14 -3.35 4.79 -19.84 -0.10 -3.45 16 18 C -0.07 -1.53 9.66 22.25 0.21 -1.31 16 19 C -0.20 -4.06 9.31 22.40 0.21 -3.85 16 20 C 0.20 4.28 6.54 38.21 0.25 4.53 16 21 N -0.65 -11.08 3.41 -747.30 -2.55 -13.63 16 22 C 0.09 0.97 10.62 127.77 1.36 2.33 16 23 C 0.09 1.22 10.09 127.77 1.29 2.51 16 24 C -0.21 -4.97 9.16 22.40 0.21 -4.76 16 25 C -0.08 -1.99 8.65 22.25 0.19 -1.80 16 26 C -0.10 -2.64 5.23 30.65 0.16 -2.48 16 27 C 0.06 1.70 5.18 86.33 0.45 2.15 16 28 H 0.07 1.90 6.94 -2.39 -0.02 1.88 16 29 H 0.05 1.76 6.45 -2.38 -0.02 1.75 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.00 -0.18 6.41 -2.38 -0.02 -0.19 16 33 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.04 1.25 6.57 -2.39 -0.02 1.24 16 35 H 0.05 2.00 6.30 -2.38 -0.02 1.98 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.05 1.79 7.30 -2.39 -0.02 1.77 16 38 H 0.08 1.88 7.87 -2.39 -0.02 1.86 16 39 H 0.14 2.30 7.94 -2.91 -0.02 2.27 16 40 H 0.14 2.10 5.74 -2.91 -0.02 2.09 16 41 H 0.08 0.84 5.31 -2.39 -0.01 0.82 16 42 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 45 H 0.08 0.77 8.07 -2.38 -0.02 0.75 16 46 H 0.06 0.91 6.47 -2.39 -0.02 0.90 16 47 H 0.12 2.70 6.32 -2.91 -0.02 2.68 16 48 H 0.11 3.15 7.05 -2.91 -0.02 3.13 16 49 H 0.05 1.66 7.30 -2.39 -0.02 1.64 16 50 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.04 1.04 6.99 -2.39 -0.02 1.03 16 52 H 0.07 2.03 7.98 -2.39 -0.02 2.01 16 Total: -1.00 -68.49 390.46 3.21 -65.28 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.88 Total: 17.05 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 6.27 Total: -34.54 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -5.97 Total: -96.40 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -68.49 3.21 -65.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839562668.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.390 kcal (2) G-P(sol) polarization free energy of solvation -68.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds