Wall clock time and date at job start Tue Mar 31 2020 11:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 110.46602 * 2 1 4 4 C 1.54380 * 110.41349 * 122.41679 * 2 1 3 5 5 C 1.54259 * 105.06510 * 142.63009 * 4 2 1 6 6 C 1.52994 * 110.32311 * 241.10345 * 5 4 2 7 7 C 1.52999 * 110.40998 * 118.93978 * 5 4 2 8 8 C 1.54381 * 105.05728 * 0.02562 * 5 4 2 9 9 N 1.48558 * 110.41121 * 237.58571 * 2 1 3 10 10 C 1.46901 * 111.00231 * 82.18501 * 9 2 1 11 11 C 1.50696 * 109.47287 * 185.29443 * 10 9 2 12 12 C 1.38288 * 119.92554 * 89.99929 * 11 10 9 13 13 C 1.38100 * 120.07490 * 179.97438 * 12 11 10 14 14 C 1.38914 * 119.92399 * 359.97438 * 13 12 11 15 15 N 1.39675 * 120.07712 * 179.97438 * 14 13 12 16 16 C 1.46507 * 119.99622 * 0.02562 * 15 14 13 17 17 C 1.46498 * 120.00353 * 179.72315 * 15 14 13 18 18 C 1.50702 * 109.47034 * 90.00055 * 17 15 14 19 19 H 1.08002 * 119.99777 * 0.02562 * 18 17 15 20 20 C 1.37877 * 120.00353 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99696 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00143 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47379 * 60.00110 * 22 20 18 24 24 H 1.48499 * 109.47074 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47192 * 299.99739 * 22 20 18 26 26 C 1.38915 * 119.85317 * 0.25647 * 14 13 12 27 27 C 1.38104 * 119.92020 * 359.48918 * 26 14 13 28 28 H 1.09005 * 109.47183 * 180.96065 * 1 2 3 29 29 H 1.09000 * 109.47112 * 300.95766 * 1 2 3 30 30 H 1.08997 * 109.47201 * 60.95964 * 1 2 3 31 31 H 1.09001 * 110.32580 * 23.73341 * 4 2 1 32 32 H 1.09006 * 110.40807 * 261.57468 * 4 2 1 33 33 H 1.09006 * 109.47138 * 177.08691 * 6 5 4 34 34 H 1.08997 * 109.47310 * 297.08443 * 6 5 4 35 35 H 1.08998 * 109.47620 * 57.09284 * 6 5 4 36 36 H 1.09006 * 109.47215 * 302.85964 * 7 5 4 37 37 H 1.08993 * 109.47366 * 62.85946 * 7 5 4 38 38 H 1.09004 * 109.47175 * 182.86358 * 7 5 4 39 39 H 1.08997 * 110.40909 * 217.36705 * 8 5 4 40 40 H 1.08998 * 110.41108 * 94.92642 * 8 5 4 41 41 H 1.08998 * 109.47195 * 65.28763 * 10 9 2 42 42 H 1.09006 * 109.46568 * 305.29505 * 10 9 2 43 43 H 1.08000 * 119.96699 * 359.95344 * 12 11 10 44 44 H 1.08000 * 120.04115 * 180.02562 * 13 12 11 45 45 H 1.09001 * 109.47091 * 90.00293 * 16 15 14 46 46 H 1.09004 * 109.46622 * 209.99851 * 16 15 14 47 47 H 1.08997 * 109.47201 * 329.99553 * 16 15 14 48 48 H 1.08998 * 109.47268 * 209.99630 * 17 15 14 49 49 H 1.08996 * 109.47244 * 330.00204 * 17 15 14 50 50 H 0.96996 * 120.00019 * 180.02562 * 21 20 18 51 51 H 1.07991 * 120.04046 * 179.72622 * 26 14 13 52 52 H 1.07995 * 119.96395 * 180.25137 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9110 1.0211 0.0000 4 6 2.0684 -0.7756 1.2214 5 6 3.3177 -1.5189 0.7054 6 6 3.1328 -3.0310 0.8474 7 6 4.5630 -1.0627 1.4682 8 6 3.4294 -1.1294 -0.7843 9 7 2.0480 -0.7463 -1.1754 10 6 2.0569 0.1013 -2.3752 11 6 2.4634 -0.7228 -3.5695 12 6 1.5004 -1.3742 -4.3183 13 6 1.8694 -2.1298 -5.4137 14 6 3.2097 -2.2348 -5.7634 15 7 3.5866 -2.9986 -6.8704 16 6 2.5677 -3.6898 -7.6645 17 6 5.0000 -3.1033 -7.2413 18 6 5.6188 -4.2816 -6.5345 19 1 5.0192 -4.8918 -5.8753 20 6 6.9503 -4.5815 -6.7301 21 7 7.6804 -3.8388 -7.5333 22 14 7.7172 -6.0424 -5.8546 23 1 7.0077 -7.2853 -6.2508 24 1 9.1499 -6.1485 -6.2304 25 1 7.6039 -5.8546 -4.3859 26 6 4.1750 -1.5831 -5.0062 27 6 3.7985 -0.8249 -3.9151 28 1 -0.3634 -1.0276 0.0172 29 1 -0.3633 0.5286 0.8813 30 1 -0.3633 0.4988 -0.8984 31 1 1.3235 -1.4881 1.5759 32 1 2.3412 -0.0855 2.0198 33 1 4.0004 -3.5438 0.4319 34 1 3.0301 -3.2870 1.9019 35 1 2.2364 -3.3396 0.3095 36 1 4.6752 0.0169 1.3682 37 1 4.4586 -1.3210 2.5219 38 1 5.4425 -1.5590 1.0579 39 1 3.7693 -1.9799 -1.3752 40 1 4.1078 -0.2850 -0.9066 41 1 2.7663 0.9174 -2.2383 42 1 1.0597 0.5103 -2.5383 43 1 0.4585 -1.2921 -4.0460 44 1 1.1168 -2.6379 -5.9984 45 1 2.2232 -3.0336 -8.4639 46 1 2.9957 -4.5946 -8.0963 47 1 1.7265 -3.9554 -7.0244 48 1 5.0835 -3.2415 -8.3193 49 1 5.5205 -2.1909 -6.9505 50 1 8.6170 -4.0499 -7.6712 51 1 5.2182 -1.6663 -5.2727 52 1 4.5480 -0.3147 -3.3284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840969767.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:54 Heat of formation + Delta-G solvation = 22.883180 kcal Electronic energy + Delta-G solvation = -27084.191005 eV Core-core repulsion = 23661.815330 eV Total energy + Delta-G solvation = -3422.375674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.89973 -38.73153 -35.94910 -34.34050 -32.75786 -31.93319 -30.41761 -29.47403 -27.77394 -27.36439 -27.11483 -26.07609 -24.76166 -23.54625 -21.96175 -21.46609 -20.26717 -19.52670 -19.08471 -16.63573 -16.43041 -15.83207 -15.39559 -15.10360 -14.85264 -14.45869 -14.07538 -13.84416 -13.76099 -13.64561 -13.52451 -13.32320 -12.92350 -12.81143 -12.78323 -12.29812 -12.15860 -12.04921 -11.94884 -11.76968 -11.53837 -11.42048 -11.36080 -11.22742 -11.02137 -10.92425 -10.66319 -10.65668 -10.57019 -10.51850 -10.43224 -10.24517 -9.86259 -9.73488 -8.81611 -8.49791 -8.34747 -8.20998 -6.43549 -6.00160 -4.16678 2.15346 2.27180 3.28397 3.32617 3.36209 4.04192 4.18268 4.42145 4.45368 4.54500 4.67952 4.85041 5.02303 5.17023 5.20945 5.22146 5.27689 5.37959 5.46371 5.55383 5.57651 5.58569 5.62095 5.64027 5.67850 5.73870 5.83795 5.85258 5.86549 5.91364 5.93703 6.04239 6.05238 6.10225 6.14216 6.19311 6.29172 6.31180 6.35925 6.43130 6.47132 6.68749 6.93103 6.98291 7.09114 7.17257 7.24473 7.30490 7.39530 7.64503 7.81824 8.16737 8.29432 8.51908 8.92435 9.50088 10.96302 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.003591 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.321607 B = 7794.658607 C = 9276.766317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 H 0.046 0.954 4 C -0.110 4.110 5 C -0.071 4.071 6 C -0.133 4.133 7 C -0.139 4.139 8 C 0.046 3.954 9 N -0.497 5.497 10 C 0.100 3.900 11 C -0.164 4.164 12 C -0.053 4.053 13 C -0.222 4.222 14 C 0.241 3.759 15 N -0.616 5.616 16 C 0.099 3.901 17 C 0.250 3.750 18 C -0.531 4.531 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.187 4.187 27 C -0.067 4.067 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.029 0.971 49 H 0.035 0.965 50 H 0.264 0.736 51 H 0.130 0.870 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.970 7.792 14.567 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.054 4.054 3 H 0.064 0.936 4 C -0.148 4.148 5 C -0.072 4.072 6 C -0.190 4.190 7 C -0.197 4.197 8 C -0.082 4.082 9 N -0.221 5.221 10 C -0.027 4.027 11 C -0.167 4.167 12 C -0.072 4.072 13 C -0.245 4.245 14 C 0.134 3.866 15 N -0.322 5.322 16 C -0.045 4.045 17 C 0.130 3.870 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.210 4.210 27 C -0.086 4.086 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.047 0.953 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.148 0.852 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.039 7.216 14.139 19.923 hybrid contribution 1.131 -0.183 0.490 1.246 sum -10.908 7.034 14.629 19.557 Atomic orbital electron populations 1.21698 0.94102 1.02375 1.01042 1.22629 0.95914 0.95708 0.91101 0.93571 1.22510 0.96969 0.98734 0.96621 1.21299 0.94759 0.96219 0.94877 1.21817 1.02399 0.93914 1.00913 1.21895 0.97268 1.00773 0.99734 1.23224 0.89919 1.00637 0.94444 1.65460 1.18129 1.36724 1.01803 1.20976 1.00288 0.92758 0.88670 1.19090 0.93373 1.05546 0.98721 1.20457 0.97912 0.95161 0.93659 1.20554 0.94300 1.07599 1.02079 1.17943 0.92492 0.89203 0.86989 1.47082 1.08202 1.49718 1.27218 1.21466 0.91750 0.96716 0.94608 1.19260 0.74663 0.97260 0.95802 1.21554 0.95031 1.12896 1.27530 0.92303 1.24955 0.97005 0.96828 0.95239 1.69921 1.07917 1.38960 1.36676 0.86588 0.78052 0.82814 0.80209 1.20222 1.21191 1.20093 1.20832 0.99748 1.02448 0.97927 1.20635 0.94697 0.97377 0.95890 0.91833 0.92756 0.92781 0.90952 0.91721 0.92630 0.93198 0.91859 0.92907 0.92661 0.92350 0.89543 0.94069 0.94865 0.90881 0.87441 0.86982 0.94684 0.91517 0.92669 0.95271 0.94705 0.92609 0.85202 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 9.34 37.15 0.35 -0.88 16 2 C 0.05 0.57 2.88 -66.08 -0.19 0.38 16 3 H 0.05 0.48 8.00 -51.93 -0.42 0.06 16 4 C -0.11 -1.06 5.85 -25.35 -0.15 -1.21 16 5 C -0.07 -0.75 1.03 -153.13 -0.16 -0.91 16 6 C -0.13 -1.45 8.23 37.15 0.31 -1.14 16 7 C -0.14 -1.31 8.24 37.16 0.31 -1.01 16 8 C 0.05 0.58 4.56 -2.17 -0.01 0.57 16 9 N -0.50 -6.29 5.04 -223.55 -1.13 -7.42 16 10 C 0.10 1.32 4.91 -4.98 -0.02 1.29 16 11 C -0.16 -2.60 5.10 -104.59 -0.53 -3.14 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 13 C -0.22 -3.96 9.21 -39.38 -0.36 -4.32 16 14 C 0.24 4.95 6.55 -83.78 -0.55 4.40 16 15 N -0.62 -13.38 2.99 -180.99 -0.54 -13.92 16 16 C 0.10 1.76 10.19 59.85 0.61 2.37 16 17 C 0.25 6.32 4.90 -5.19 -0.03 6.30 16 18 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 19 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 22 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C -0.19 -3.84 9.20 -39.38 -0.36 -4.20 16 27 C -0.07 -1.16 8.72 -39.61 -0.35 -1.51 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.50 7.36 -51.93 -0.38 0.11 16 31 H 0.07 0.68 7.41 -51.93 -0.38 0.30 16 32 H 0.06 0.55 7.71 -51.93 -0.40 0.15 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.31 7.53 -51.93 -0.39 0.92 16 40 H 0.04 0.52 7.54 -51.93 -0.39 0.13 16 41 H 0.03 0.43 7.82 -51.93 -0.41 0.02 16 42 H 0.07 0.88 7.22 -51.93 -0.37 0.51 16 43 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.11 1.81 6.14 -52.49 -0.32 1.49 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.88 6.20 -51.93 -0.32 0.56 16 48 H 0.03 0.77 8.07 -51.93 -0.42 0.36 16 49 H 0.04 0.93 6.22 -51.93 -0.32 0.61 16 50 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 51 H 0.13 2.94 6.16 -52.49 -0.32 2.62 16 52 H 0.11 1.66 8.05 -52.49 -0.42 1.24 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -28.55 402.57 -11.30 -39.85 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -9.47 Total: 1.60 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.94 Total: -17.54 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.93 Total: -46.36 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.55 -11.30 -39.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840969767.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.731 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds