Wall clock time and date at job start Tue Mar 31 2020 11:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 110.46602 * 2 1 4 4 C 1.54380 * 110.41349 * 122.41679 * 2 1 3 5 5 C 1.54259 * 105.06510 * 142.63009 * 4 2 1 6 6 C 1.52994 * 110.32311 * 241.10345 * 5 4 2 7 7 C 1.52999 * 110.40998 * 118.93978 * 5 4 2 8 8 C 1.54381 * 105.05728 * 0.02562 * 5 4 2 9 9 N 1.48558 * 110.41121 * 237.58571 * 2 1 3 10 10 C 1.46901 * 111.00231 * 82.18501 * 9 2 1 11 11 C 1.50696 * 109.47287 * 185.29443 * 10 9 2 12 12 C 1.38288 * 119.92554 * 89.99929 * 11 10 9 13 13 C 1.38100 * 120.07490 * 179.97438 * 12 11 10 14 14 C 1.38914 * 119.92399 * 359.97438 * 13 12 11 15 15 N 1.39675 * 120.07712 * 179.97438 * 14 13 12 16 16 C 1.46507 * 119.99622 * 0.02562 * 15 14 13 17 17 C 1.46498 * 120.00353 * 179.72315 * 15 14 13 18 18 C 1.50702 * 109.47034 * 90.00055 * 17 15 14 19 19 H 1.08002 * 119.99777 * 0.02562 * 18 17 15 20 20 C 1.37877 * 120.00353 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99696 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00143 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47379 * 60.00110 * 22 20 18 24 24 H 1.48499 * 109.47074 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47192 * 299.99739 * 22 20 18 26 26 C 1.38915 * 119.85317 * 0.25647 * 14 13 12 27 27 C 1.38104 * 119.92020 * 359.48918 * 26 14 13 28 28 H 1.09005 * 109.47183 * 180.96065 * 1 2 3 29 29 H 1.09000 * 109.47112 * 300.95766 * 1 2 3 30 30 H 1.08997 * 109.47201 * 60.95964 * 1 2 3 31 31 H 1.09001 * 110.32580 * 23.73341 * 4 2 1 32 32 H 1.09006 * 110.40807 * 261.57468 * 4 2 1 33 33 H 1.09006 * 109.47138 * 177.08691 * 6 5 4 34 34 H 1.08997 * 109.47310 * 297.08443 * 6 5 4 35 35 H 1.08998 * 109.47620 * 57.09284 * 6 5 4 36 36 H 1.09006 * 109.47215 * 302.85964 * 7 5 4 37 37 H 1.08993 * 109.47366 * 62.85946 * 7 5 4 38 38 H 1.09004 * 109.47175 * 182.86358 * 7 5 4 39 39 H 1.08997 * 110.40909 * 217.36705 * 8 5 4 40 40 H 1.08998 * 110.41108 * 94.92642 * 8 5 4 41 41 H 1.08998 * 109.47195 * 65.28763 * 10 9 2 42 42 H 1.09006 * 109.46568 * 305.29505 * 10 9 2 43 43 H 1.08000 * 119.96699 * 359.95344 * 12 11 10 44 44 H 1.08000 * 120.04115 * 180.02562 * 13 12 11 45 45 H 1.09001 * 109.47091 * 90.00293 * 16 15 14 46 46 H 1.09004 * 109.46622 * 209.99851 * 16 15 14 47 47 H 1.08997 * 109.47201 * 329.99553 * 16 15 14 48 48 H 1.08998 * 109.47268 * 209.99630 * 17 15 14 49 49 H 1.08996 * 109.47244 * 330.00204 * 17 15 14 50 50 H 0.96996 * 120.00019 * 180.02562 * 21 20 18 51 51 H 1.07991 * 120.04046 * 179.72622 * 26 14 13 52 52 H 1.07995 * 119.96395 * 180.25137 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9110 1.0211 0.0000 4 6 2.0684 -0.7756 1.2214 5 6 3.3177 -1.5189 0.7054 6 6 3.1328 -3.0310 0.8474 7 6 4.5630 -1.0627 1.4682 8 6 3.4294 -1.1294 -0.7843 9 7 2.0480 -0.7463 -1.1754 10 6 2.0569 0.1013 -2.3752 11 6 2.4634 -0.7228 -3.5695 12 6 1.5004 -1.3742 -4.3183 13 6 1.8694 -2.1298 -5.4137 14 6 3.2097 -2.2348 -5.7634 15 7 3.5866 -2.9986 -6.8704 16 6 2.5677 -3.6898 -7.6645 17 6 5.0000 -3.1033 -7.2413 18 6 5.6188 -4.2816 -6.5345 19 1 5.0192 -4.8918 -5.8753 20 6 6.9503 -4.5815 -6.7301 21 7 7.6804 -3.8388 -7.5333 22 14 7.7172 -6.0424 -5.8546 23 1 7.0077 -7.2853 -6.2508 24 1 9.1499 -6.1485 -6.2304 25 1 7.6039 -5.8546 -4.3859 26 6 4.1750 -1.5831 -5.0062 27 6 3.7985 -0.8249 -3.9151 28 1 -0.3634 -1.0276 0.0172 29 1 -0.3633 0.5286 0.8813 30 1 -0.3633 0.4988 -0.8984 31 1 1.3235 -1.4881 1.5759 32 1 2.3412 -0.0855 2.0198 33 1 4.0004 -3.5438 0.4319 34 1 3.0301 -3.2870 1.9019 35 1 2.2364 -3.3396 0.3095 36 1 4.6752 0.0169 1.3682 37 1 4.4586 -1.3210 2.5219 38 1 5.4425 -1.5590 1.0579 39 1 3.7693 -1.9799 -1.3752 40 1 4.1078 -0.2850 -0.9066 41 1 2.7663 0.9174 -2.2383 42 1 1.0597 0.5103 -2.5383 43 1 0.4585 -1.2921 -4.0460 44 1 1.1168 -2.6379 -5.9984 45 1 2.2232 -3.0336 -8.4639 46 1 2.9957 -4.5946 -8.0963 47 1 1.7265 -3.9554 -7.0244 48 1 5.0835 -3.2415 -8.3193 49 1 5.5205 -2.1909 -6.9505 50 1 8.6170 -4.0499 -7.6712 51 1 5.2182 -1.6663 -5.2727 52 1 4.5480 -0.3147 -3.3284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840969767.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:53 Heat of formation + Delta-G solvation = 9.075016 kcal Electronic energy + Delta-G solvation = -27084.789772 eV Core-core repulsion = 23661.815330 eV Total energy + Delta-G solvation = -3422.974441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.93214 -40.07669 -37.44026 -35.42128 -34.70792 -32.96405 -31.89618 -30.76891 -29.58819 -28.18297 -28.11618 -27.13534 -26.23566 -25.00563 -23.35732 -22.98360 -21.16591 -20.95511 -19.96330 -18.64441 -18.09192 -16.91349 -16.79897 -16.35291 -16.05249 -16.01690 -15.37041 -15.24311 -14.90603 -14.71277 -14.63860 -14.38447 -14.29085 -14.15263 -14.00843 -13.67974 -13.30604 -13.18129 -13.14140 -13.03864 -12.85744 -12.69862 -12.67117 -12.53747 -12.48338 -12.24578 -12.19923 -11.93371 -11.78811 -11.70149 -11.49896 -11.42643 -11.33462 -11.23048 -10.65315 -10.39890 -9.66415 -9.32559 -8.36860 -7.79834 -6.38614 0.70680 0.84823 1.35608 1.37577 1.45883 2.33159 2.63238 2.95105 3.04980 3.36226 3.60535 3.75109 3.97370 4.03997 4.14203 4.23348 4.26053 4.37607 4.39810 4.45514 4.46346 4.62022 4.64179 4.67031 4.70943 4.76977 4.80254 4.83526 4.86445 4.88710 4.92004 4.96703 5.00342 5.03586 5.08289 5.12332 5.16185 5.19410 5.20442 5.32272 5.32615 5.44916 5.46370 5.49058 5.58676 5.67800 5.69318 5.89212 6.06355 6.09055 6.17242 6.25764 6.49668 6.81852 6.93679 7.33250 8.82095 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.003591 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.321607 B = 7794.658607 C = 9276.766317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.054 3.946 3 H 0.052 0.948 4 C -0.105 4.105 5 C -0.070 4.070 6 C -0.130 4.130 7 C -0.136 4.136 8 C 0.046 3.954 9 N -0.508 5.508 10 C 0.104 3.896 11 C -0.152 4.152 12 C -0.049 4.049 13 C -0.217 4.217 14 C 0.213 3.787 15 N -0.632 5.632 16 C 0.098 3.902 17 C 0.268 3.732 18 C -0.543 4.543 19 H 0.048 0.952 20 C 0.014 3.986 21 N -0.926 5.926 22 Si 0.960 3.040 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.274 1.274 26 C -0.215 4.215 27 C -0.067 4.067 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.092 0.908 43 H 0.140 0.860 44 H 0.133 0.867 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.009 0.991 50 H 0.268 0.732 51 H 0.093 0.907 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.225 8.222 17.066 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.054 4.054 3 H 0.070 0.930 4 C -0.143 4.143 5 C -0.071 4.071 6 C -0.188 4.188 7 C -0.194 4.194 8 C -0.083 4.083 9 N -0.232 5.232 10 C -0.024 4.024 11 C -0.154 4.154 12 C -0.068 4.068 13 C -0.239 4.239 14 C 0.108 3.892 15 N -0.340 5.340 16 C -0.045 4.045 17 C 0.146 3.854 18 C -0.581 4.581 19 H 0.066 0.934 20 C -0.186 4.186 21 N -0.566 5.566 22 Si 0.785 3.215 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.200 1.200 26 C -0.238 4.238 27 C -0.086 4.086 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.111 0.889 43 H 0.158 0.842 44 H 0.151 0.849 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.076 0.924 51 H 0.111 0.889 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.331 7.659 16.655 23.268 hybrid contribution 1.770 -0.231 -0.215 1.798 sum -12.561 7.428 16.440 21.982 Atomic orbital electron populations 1.21679 0.92896 1.02205 1.02034 1.22728 0.96793 0.95702 0.90149 0.93042 1.22505 0.96200 0.98897 0.96712 1.21303 0.96108 0.96112 0.93543 1.21785 1.01104 0.94160 1.01714 1.21872 0.96195 1.00964 1.00348 1.23148 0.90158 0.99325 0.95626 1.65416 1.17859 1.37325 1.02570 1.20969 1.01382 0.92283 0.87729 1.19445 0.92401 1.04415 0.99171 1.20847 0.99534 0.93871 0.92593 1.20802 0.93195 1.07415 1.02525 1.18197 0.93803 0.90055 0.87165 1.46955 1.07179 1.51340 1.28575 1.21598 0.91339 0.96382 0.95132 1.18743 0.77127 0.95389 0.94096 1.21752 0.95495 1.13398 1.27502 0.93382 1.25767 0.97423 0.99506 0.95859 1.70028 1.08260 1.40494 1.37830 0.85580 0.77505 0.79587 0.78875 1.19287 1.20223 1.19954 1.20719 0.98255 1.04854 0.99953 1.20748 0.96124 0.96825 0.94923 0.92577 0.90888 0.92691 0.90548 0.89994 0.93997 0.91429 0.93149 0.92376 0.91122 0.93368 0.92739 0.94312 0.94417 0.88945 0.84189 0.84950 0.92897 0.92556 0.90377 0.97284 0.97270 0.92355 0.88857 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.34 71.98 0.67 -1.26 16 2 C 0.05 0.96 2.88 45.06 0.13 1.09 16 3 H 0.05 0.88 8.00 -2.39 -0.02 0.87 16 4 C -0.11 -1.70 5.85 31.49 0.18 -1.52 16 5 C -0.07 -1.38 1.03 -51.29 -0.05 -1.43 16 6 C -0.13 -2.71 8.23 71.98 0.59 -2.11 16 7 C -0.14 -2.33 8.24 71.98 0.59 -1.74 16 8 C 0.05 1.13 4.56 86.45 0.39 1.53 16 9 N -0.51 -11.79 5.04 -861.19 -4.34 -16.13 16 10 C 0.10 2.47 4.91 85.56 0.42 2.89 16 11 C -0.15 -4.60 5.10 -19.84 -0.10 -4.70 16 12 C -0.05 -1.48 9.69 22.25 0.22 -1.26 16 13 C -0.22 -7.43 9.21 22.40 0.21 -7.23 16 14 C 0.21 8.96 6.55 38.22 0.25 9.21 16 15 N -0.63 -28.48 2.99 -726.54 -2.17 -30.65 16 16 C 0.10 3.51 10.19 127.77 1.30 4.82 16 17 C 0.27 14.42 4.90 85.63 0.42 14.84 16 18 C -0.54 -31.15 9.39 25.60 0.24 -30.91 16 19 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 20 C 0.01 0.78 5.46 84.65 0.46 1.25 16 21 N -0.93 -55.12 13.29 21.45 0.28 -54.83 16 22 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 26 C -0.21 -9.33 9.20 22.40 0.21 -9.13 16 27 C -0.07 -2.38 8.72 22.25 0.19 -2.19 16 28 H 0.06 0.92 8.12 -2.38 -0.02 0.90 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.81 7.36 -2.39 -0.02 0.79 16 31 H 0.08 1.20 7.41 -2.39 -0.02 1.18 16 32 H 0.08 1.07 7.71 -2.38 -0.02 1.05 16 33 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.05 1.69 7.53 -2.39 -0.02 1.67 16 40 H 0.04 0.96 7.54 -2.39 -0.02 0.94 16 41 H 0.04 0.88 7.82 -2.39 -0.02 0.86 16 42 H 0.09 1.88 7.22 -2.38 -0.02 1.86 16 43 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 44 H 0.13 3.94 6.14 -2.91 -0.02 3.92 16 45 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 2.09 8.07 -2.38 -0.02 2.07 16 47 H 0.08 2.38 6.20 -2.39 -0.01 2.37 16 48 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 49 H 0.01 0.54 6.22 -2.39 -0.01 0.53 16 50 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 51 H 0.09 4.66 6.16 -2.92 -0.02 4.65 16 52 H 0.11 3.73 8.05 -2.91 -0.02 3.71 16 Total: -1.00 -64.10 402.57 2.98 -61.12 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.86 Total: 21.58 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 6.33 Total: -27.86 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -6.23 Total: -101.61 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.10 2.98 -61.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840969767.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.192 kcal (2) G-P(sol) polarization free energy of solvation -64.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds