Wall clock time and date at job start Tue Mar 31 2020 11:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50700 * 119.99890 * 2 1 4 4 C 1.53000 * 109.47079 * 294.99847 * 3 2 1 5 5 C 1.53000 * 109.47293 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47033 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00153 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99792 * 179.97438 * 6 5 4 9 9 N 1.31505 * 120.00148 * 179.97438 * 8 6 5 10 10 Si 1.86808 * 120.00124 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46890 * 89.99831 * 10 8 6 12 12 H 1.48497 * 109.47279 * 209.99902 * 10 8 6 13 13 H 1.48498 * 109.47040 * 330.00086 * 10 8 6 14 14 N 1.28010 * 120.00276 * 179.97438 * 2 1 3 15 15 N 1.40099 * 119.99862 * 0.02562 * 14 2 1 16 16 C 1.46495 * 119.99946 * 180.02562 * 15 14 2 17 17 H 1.08999 * 109.47694 * 29.99465 * 16 15 14 18 18 C 1.53004 * 109.47438 * 150.00276 * 16 15 14 19 19 C 1.50706 * 109.46503 * 294.99458 * 18 16 15 20 20 C 1.38238 * 119.99727 * 90.00317 * 19 18 16 21 21 C 1.38234 * 119.99693 * 180.02562 * 20 19 18 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00207 * 270.01808 * 19 18 16 25 25 C 1.53004 * 109.46831 * 269.99772 * 16 15 14 26 26 C 1.53000 * 109.47350 * 304.99997 * 25 16 15 27 27 C 1.52994 * 109.47053 * 65.00324 * 25 16 15 28 28 H 1.08999 * 109.47448 * 270.00063 * 1 2 3 29 29 H 1.08999 * 109.47081 * 30.00417 * 1 2 3 30 30 H 1.08999 * 109.46631 * 150.00278 * 1 2 3 31 31 H 1.09007 * 109.47078 * 54.99499 * 3 2 1 32 32 H 1.08994 * 109.47290 * 174.99884 * 3 2 1 33 33 H 1.09003 * 109.47267 * 300.00088 * 4 3 2 34 34 H 1.09003 * 109.47171 * 60.00010 * 4 3 2 35 35 H 1.08994 * 109.47214 * 300.00071 * 5 4 3 36 36 H 1.09003 * 109.46903 * 59.99969 * 5 4 3 37 37 H 0.97001 * 120.00465 * 180.02562 * 9 8 6 38 38 H 0.97004 * 120.00141 * 359.97438 * 15 14 2 39 39 H 1.09000 * 109.47324 * 175.00047 * 18 16 15 40 40 H 1.08993 * 109.47443 * 54.99251 * 18 16 15 41 41 H 1.07997 * 119.99846 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 45 45 H 1.07999 * 120.00008 * 0.02562 * 24 19 18 46 46 H 1.09006 * 109.47215 * 184.99814 * 25 16 15 47 47 H 1.08998 * 109.46810 * 59.99819 * 26 25 16 48 48 H 1.09001 * 109.47464 * 180.02562 * 26 25 16 49 49 H 1.09000 * 109.47144 * 300.00263 * 26 25 16 50 50 H 1.09001 * 109.47287 * 179.97438 * 27 25 16 51 51 H 1.09003 * 109.46925 * 299.99329 * 27 25 16 52 52 H 1.09000 * 109.47687 * 59.99904 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9876 2.0516 -1.3074 5 6 2.7520 3.3769 -1.3071 6 6 2.4836 4.1118 -2.5952 7 1 1.8326 3.6773 -3.3393 8 6 3.0684 5.3394 -2.8231 9 7 2.8347 5.9806 -3.9473 10 14 4.1940 6.0914 -1.5357 11 1 5.5918 5.6570 -1.7859 12 1 4.1145 7.5722 -1.6129 13 1 3.7704 5.6426 -0.1850 14 7 2.1471 -1.1086 0.0005 15 7 1.4467 -2.3219 0.0005 16 6 2.1792 -3.5905 0.0016 17 1 3.1313 -3.4600 0.5160 18 6 1.3518 -4.6566 0.7227 19 6 1.2037 -4.2805 2.1745 20 6 0.1341 -3.5054 2.5820 21 6 -0.0014 -3.1600 3.9137 22 6 0.9323 -3.5901 4.8378 23 6 2.0046 -4.3611 4.4295 24 6 2.1376 -4.7104 3.0986 25 6 2.4352 -4.0328 -1.4405 26 6 1.1075 -4.0957 -2.1981 27 6 3.3655 -3.0289 -2.1243 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.9316 1.9146 0.8418 32 1 3.3287 1.1080 0.0896 33 1 2.3164 1.4422 -2.1492 34 1 0.9193 2.2488 -1.3970 35 1 2.4228 3.9861 -0.4654 36 1 3.8204 3.1801 -1.2173 37 1 3.2464 6.8441 -4.1078 38 1 0.4766 -2.3219 0.0005 39 1 1.8553 -5.6204 0.6466 40 1 0.3661 -4.7243 0.2625 41 1 -0.5951 -3.1691 1.8599 42 1 -0.8368 -2.5541 4.2320 43 1 0.8266 -3.3199 5.8781 44 1 2.7365 -4.6935 5.1507 45 1 2.9736 -5.3154 2.7801 46 1 2.9009 -5.0184 -1.4411 47 1 0.6419 -3.1102 -2.1975 48 1 1.2898 -4.4112 -3.2254 49 1 0.4447 -4.8109 -1.7110 50 1 3.5483 -3.3442 -3.1515 51 1 2.8999 -2.0434 -2.1238 52 1 4.3115 -2.9841 -1.5846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841634333.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:21 Heat of formation + Delta-G solvation = 33.077328 kcal Electronic energy + Delta-G solvation = -26415.022563 eV Core-core repulsion = 22993.088940 eV Total energy + Delta-G solvation = -3421.933623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.79164 -38.25758 -36.76446 -34.21482 -33.07798 -32.25957 -31.11969 -30.65063 -28.77893 -27.73100 -27.24880 -26.83132 -23.97338 -23.12590 -22.72257 -21.24659 -20.15006 -19.68068 -18.95700 -17.03186 -16.65442 -16.11085 -15.96974 -15.54701 -15.25128 -14.83797 -14.30145 -14.15586 -14.05807 -13.74357 -13.66827 -13.62989 -13.16371 -13.09620 -12.68778 -12.58130 -12.29527 -12.04986 -12.01049 -11.87183 -11.67019 -11.62066 -11.48791 -11.31512 -11.22904 -10.96735 -10.83573 -10.77021 -10.70584 -10.43934 -9.92921 -9.65592 -9.61803 -9.44682 -9.13209 -9.11504 -8.87991 -8.48014 -7.57048 -5.98760 -3.96136 1.14587 1.19302 2.63190 3.12852 3.35767 3.42703 3.46998 3.56242 4.41697 4.50752 4.57333 4.69900 4.77810 4.87603 4.90304 4.95744 5.01516 5.05495 5.22754 5.27655 5.28948 5.35749 5.37720 5.42797 5.47930 5.60345 5.62754 5.66310 5.77075 5.79737 5.85249 5.90172 5.93492 5.95463 6.04742 6.07606 6.14691 6.19237 6.24769 6.29988 6.34145 6.41747 6.48200 6.65562 6.76647 6.79174 6.92149 7.00924 7.38345 7.41540 7.52769 7.86385 8.60567 8.79722 9.06832 9.64312 11.14903 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.002724 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.706944 B =10275.748088 C =11342.079062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 C -0.058 4.058 4 C -0.093 4.093 5 C -0.014 4.014 6 C -0.518 4.518 7 H 0.070 0.930 8 C 0.064 3.936 9 N -0.906 5.906 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.264 1.264 14 N -0.235 5.235 15 N -0.659 5.659 16 C 0.200 3.800 17 H 0.079 0.921 18 C -0.093 4.093 19 C -0.072 4.072 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.111 4.111 26 C -0.145 4.145 27 C -0.140 4.140 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.016 0.984 36 H 0.012 0.988 37 H 0.262 0.738 38 H 0.370 0.630 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.050 0.950 50 H 0.045 0.955 51 H 0.066 0.934 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 -25.661 14.370 29.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.098 4.098 4 C -0.132 4.132 5 C -0.052 4.052 6 C -0.556 4.556 7 H 0.089 0.911 8 C -0.136 4.136 9 N -0.546 5.546 10 Si 0.707 3.293 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.189 1.189 14 N -0.041 5.041 15 N -0.398 5.398 16 C 0.093 3.907 17 H 0.097 0.903 18 C -0.131 4.131 19 C -0.072 4.072 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.131 4.131 26 C -0.202 4.202 27 C -0.198 4.198 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.209 0.791 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.085 0.915 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.957 -26.076 14.282 29.994 hybrid contribution -0.651 0.751 0.514 1.119 sum -4.608 -25.325 14.796 29.690 Atomic orbital electron populations 1.21165 0.94199 1.03050 1.02129 1.24631 0.93606 0.93821 1.01162 1.20479 0.99398 0.89863 1.00049 1.21412 1.00524 0.97015 0.94276 1.19586 0.95249 0.92778 0.97578 1.21173 1.29268 1.03131 1.02007 0.91143 1.25042 0.96337 0.96967 0.95279 1.69919 1.44835 1.15236 1.24586 0.86772 0.81448 0.78101 0.82938 1.20335 1.21530 1.18905 1.73773 1.26674 0.92085 1.11556 1.47865 1.05186 1.00128 1.86606 1.20504 0.95283 0.81254 0.93640 0.90253 1.21022 1.01761 0.98951 0.91379 1.19773 0.94879 0.97407 0.95121 1.20945 0.97886 0.98070 0.95724 1.21130 0.99250 0.99798 0.93427 1.21119 0.95109 0.98714 0.99515 1.21117 0.97993 0.98570 0.96000 1.21023 0.98795 1.00661 0.93129 1.21643 0.96586 0.99106 0.95799 1.21810 0.96992 1.01708 0.99729 1.21733 0.98937 1.00025 0.99059 0.91371 0.90053 0.92674 0.90902 0.90943 0.92811 0.92720 0.96596 0.97006 0.92841 0.79078 0.89583 0.90531 0.86778 0.86314 0.86367 0.86280 0.86229 0.91201 0.92486 0.93006 0.93116 0.93549 0.91460 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.46 36.01 0.34 -1.42 16 2 C 0.06 0.91 6.55 -78.91 -0.52 0.39 16 3 C -0.06 -0.95 5.60 -27.88 -0.16 -1.11 16 4 C -0.09 -1.84 5.03 -26.73 -0.13 -1.97 16 5 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 6 C -0.52 -14.95 9.66 -34.44 -0.33 -15.29 16 7 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 8 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 9 N -0.91 -28.36 13.96 55.43 0.77 -27.59 16 10 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 14 N -0.23 -3.39 10.08 35.60 0.36 -3.03 16 15 N -0.66 -7.49 4.07 -4.89 -0.02 -7.51 16 16 C 0.20 1.94 2.33 -67.93 -0.16 1.78 16 17 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.09 -0.71 4.55 -27.88 -0.13 -0.84 16 19 C -0.07 -0.65 4.95 -104.62 -0.52 -1.17 16 20 C -0.11 -1.01 9.20 -39.58 -0.36 -1.38 16 21 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 22 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.12 -1.05 9.70 -39.58 -0.38 -1.44 16 25 C -0.11 -1.04 2.74 -90.62 -0.25 -1.29 16 26 C -0.15 -1.31 8.74 37.16 0.32 -0.98 16 27 C -0.14 -1.65 8.92 37.15 0.33 -1.32 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.02 6.91 -51.93 -0.36 0.66 16 30 H 0.05 0.60 6.31 -51.93 -0.33 0.28 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.05 1.05 7.01 -51.93 -0.36 0.69 16 35 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 36 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.37 3.89 5.82 -182.59 -1.06 2.82 16 39 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 40 H 0.08 0.54 6.76 -51.93 -0.35 0.19 16 41 H 0.11 0.95 7.72 -52.49 -0.41 0.55 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.60 7.43 -51.93 -0.39 0.21 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.05 0.38 6.68 -51.93 -0.35 0.03 16 50 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.07 0.97 6.78 -51.93 -0.35 0.61 16 52 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 409.47 15.07 6.17 6.17 Total: -1.00 -31.63 409.47 -10.95 -42.59 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -10.22 Total: 1.15 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -3.35 Total: -29.13 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 1.11 Total: -38.13 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.63 -10.95 -42.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841634333.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.665 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds