Wall clock time and date at job start Tue Mar 31 2020 11:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50700 * 119.99890 * 2 1 4 4 C 1.53000 * 109.47079 * 294.99847 * 3 2 1 5 5 C 1.53000 * 109.47293 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47033 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00153 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99792 * 179.97438 * 6 5 4 9 9 N 1.31505 * 120.00148 * 179.97438 * 8 6 5 10 10 Si 1.86808 * 120.00124 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46890 * 89.99831 * 10 8 6 12 12 H 1.48497 * 109.47279 * 209.99902 * 10 8 6 13 13 H 1.48498 * 109.47040 * 330.00086 * 10 8 6 14 14 N 1.28010 * 120.00276 * 179.97438 * 2 1 3 15 15 N 1.40099 * 119.99862 * 0.02562 * 14 2 1 16 16 C 1.46495 * 119.99946 * 180.02562 * 15 14 2 17 17 H 1.08999 * 109.47694 * 29.99465 * 16 15 14 18 18 C 1.53004 * 109.47438 * 150.00276 * 16 15 14 19 19 C 1.50706 * 109.46503 * 294.99458 * 18 16 15 20 20 C 1.38238 * 119.99727 * 90.00317 * 19 18 16 21 21 C 1.38234 * 119.99693 * 180.02562 * 20 19 18 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00207 * 270.01808 * 19 18 16 25 25 C 1.53004 * 109.46831 * 269.99772 * 16 15 14 26 26 C 1.53000 * 109.47350 * 304.99997 * 25 16 15 27 27 C 1.52994 * 109.47053 * 65.00324 * 25 16 15 28 28 H 1.08999 * 109.47448 * 270.00063 * 1 2 3 29 29 H 1.08999 * 109.47081 * 30.00417 * 1 2 3 30 30 H 1.08999 * 109.46631 * 150.00278 * 1 2 3 31 31 H 1.09007 * 109.47078 * 54.99499 * 3 2 1 32 32 H 1.08994 * 109.47290 * 174.99884 * 3 2 1 33 33 H 1.09003 * 109.47267 * 300.00088 * 4 3 2 34 34 H 1.09003 * 109.47171 * 60.00010 * 4 3 2 35 35 H 1.08994 * 109.47214 * 300.00071 * 5 4 3 36 36 H 1.09003 * 109.46903 * 59.99969 * 5 4 3 37 37 H 0.97001 * 120.00465 * 180.02562 * 9 8 6 38 38 H 0.97004 * 120.00141 * 359.97438 * 15 14 2 39 39 H 1.09000 * 109.47324 * 175.00047 * 18 16 15 40 40 H 1.08993 * 109.47443 * 54.99251 * 18 16 15 41 41 H 1.07997 * 119.99846 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 45 45 H 1.07999 * 120.00008 * 0.02562 * 24 19 18 46 46 H 1.09006 * 109.47215 * 184.99814 * 25 16 15 47 47 H 1.08998 * 109.46810 * 59.99819 * 26 25 16 48 48 H 1.09001 * 109.47464 * 180.02562 * 26 25 16 49 49 H 1.09000 * 109.47144 * 300.00263 * 26 25 16 50 50 H 1.09001 * 109.47287 * 179.97438 * 27 25 16 51 51 H 1.09003 * 109.46925 * 299.99329 * 27 25 16 52 52 H 1.09000 * 109.47687 * 59.99904 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9876 2.0516 -1.3074 5 6 2.7520 3.3769 -1.3071 6 6 2.4836 4.1118 -2.5952 7 1 1.8326 3.6773 -3.3393 8 6 3.0684 5.3394 -2.8231 9 7 2.8347 5.9806 -3.9473 10 14 4.1940 6.0914 -1.5357 11 1 5.5918 5.6570 -1.7859 12 1 4.1145 7.5722 -1.6129 13 1 3.7704 5.6426 -0.1850 14 7 2.1471 -1.1086 0.0005 15 7 1.4467 -2.3219 0.0005 16 6 2.1792 -3.5905 0.0016 17 1 3.1313 -3.4600 0.5160 18 6 1.3518 -4.6566 0.7227 19 6 1.2037 -4.2805 2.1745 20 6 0.1341 -3.5054 2.5820 21 6 -0.0014 -3.1600 3.9137 22 6 0.9323 -3.5901 4.8378 23 6 2.0046 -4.3611 4.4295 24 6 2.1376 -4.7104 3.0986 25 6 2.4352 -4.0328 -1.4405 26 6 1.1075 -4.0957 -2.1981 27 6 3.3655 -3.0289 -2.1243 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.9316 1.9146 0.8418 32 1 3.3287 1.1080 0.0896 33 1 2.3164 1.4422 -2.1492 34 1 0.9193 2.2488 -1.3970 35 1 2.4228 3.9861 -0.4654 36 1 3.8204 3.1801 -1.2173 37 1 3.2464 6.8441 -4.1078 38 1 0.4766 -2.3219 0.0005 39 1 1.8553 -5.6204 0.6466 40 1 0.3661 -4.7243 0.2625 41 1 -0.5951 -3.1691 1.8599 42 1 -0.8368 -2.5541 4.2320 43 1 0.8266 -3.3199 5.8781 44 1 2.7365 -4.6935 5.1507 45 1 2.9736 -5.3154 2.7801 46 1 2.9009 -5.0184 -1.4411 47 1 0.6419 -3.1102 -2.1975 48 1 1.2898 -4.4112 -3.2254 49 1 0.4447 -4.8109 -1.7110 50 1 3.5483 -3.3442 -3.1515 51 1 2.8999 -2.0434 -2.1238 52 1 4.3115 -2.9841 -1.5846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841634333.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:20 Heat of formation + Delta-G solvation = 18.288838 kcal Electronic energy + Delta-G solvation = -26415.663840 eV Core-core repulsion = 22993.088940 eV Total energy + Delta-G solvation = -3422.574900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.47258 -39.14945 -37.79617 -35.89870 -34.18154 -33.73992 -31.97245 -31.71491 -29.80085 -29.02319 -28.16693 -27.83848 -25.19894 -24.40151 -23.40447 -21.95839 -21.89201 -20.51878 -20.08195 -18.80557 -17.65721 -17.23737 -16.77795 -16.27457 -16.26203 -15.97594 -15.64465 -15.60897 -15.03083 -14.85971 -14.59015 -14.53907 -14.24987 -14.16668 -13.77169 -13.69176 -13.39897 -13.37168 -13.03854 -12.92420 -12.80681 -12.62989 -12.51935 -12.48157 -12.41885 -12.01439 -11.85894 -11.76386 -11.71266 -11.54273 -11.49192 -11.36343 -11.33112 -11.19001 -10.73129 -10.60796 -9.78040 -9.54024 -8.53750 -8.26517 -6.30228 0.49599 0.54366 1.38877 1.40226 1.52422 1.53151 2.20870 2.39413 2.90844 3.09195 3.73776 3.91935 3.95576 3.99773 4.12939 4.14448 4.21098 4.21752 4.31325 4.37874 4.41351 4.44601 4.53514 4.65102 4.66996 4.69721 4.75869 4.78945 4.82317 4.82810 4.91096 5.01313 5.03184 5.08034 5.13212 5.15186 5.18959 5.20052 5.20677 5.26850 5.31856 5.43900 5.51212 5.61049 5.61824 5.64649 5.66244 5.71496 5.74627 5.87150 6.17213 6.32846 6.52791 6.78054 7.34328 7.78951 8.90522 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.002724 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.706944 B =10275.748088 C =11342.079062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.046 3.954 3 C -0.048 4.048 4 C -0.082 4.082 5 C -0.012 4.012 6 C -0.531 4.531 7 H 0.029 0.971 8 C 0.001 3.999 9 N -0.955 5.955 10 Si 0.952 3.048 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.242 1.242 14 N -0.249 5.249 15 N -0.650 5.650 16 C 0.201 3.799 17 H 0.063 0.937 18 C -0.083 4.083 19 C -0.082 4.082 20 C -0.121 4.121 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.106 4.106 26 C -0.142 4.142 27 C -0.139 4.139 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.055 0.945 35 H 0.026 0.974 36 H 0.015 0.985 37 H 0.265 0.735 38 H 0.376 0.624 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.093 0.907 47 H 0.037 0.963 48 H 0.051 0.949 49 H 0.071 0.929 50 H 0.049 0.951 51 H 0.037 0.963 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.821 -27.388 16.578 32.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.087 4.087 4 C -0.121 4.121 5 C -0.050 4.050 6 C -0.569 4.569 7 H 0.047 0.953 8 C -0.195 4.195 9 N -0.596 5.596 10 Si 0.775 3.225 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.165 1.165 14 N -0.056 5.056 15 N -0.389 5.389 16 C 0.095 3.905 17 H 0.082 0.918 18 C -0.122 4.122 19 C -0.082 4.082 20 C -0.139 4.139 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.126 4.126 26 C -0.199 4.199 27 C -0.196 4.196 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.216 0.784 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.111 0.889 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.068 0.932 51 H 0.056 0.944 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.764 -27.829 16.499 32.571 hybrid contribution -0.732 1.200 -0.254 1.429 sum -4.495 -26.629 16.245 31.515 Atomic orbital electron populations 1.21119 0.92501 1.03126 1.03076 1.24436 0.94612 0.93112 1.02674 1.20255 0.99378 0.90868 0.98215 1.21213 0.99845 0.95190 0.95837 1.19551 0.96015 0.94327 0.95073 1.21546 1.28407 1.03716 1.03256 0.95296 1.26061 0.98211 0.97544 0.97727 1.70077 1.46513 1.15955 1.27051 0.85629 0.79082 0.77136 0.80645 1.19432 1.21016 1.16473 1.73661 1.28023 0.93109 1.10793 1.47920 1.05562 0.99599 1.85857 1.20592 0.94948 0.81042 0.93947 0.91834 1.20985 1.02087 0.98815 0.90275 1.19962 0.94902 0.97479 0.95847 1.21143 0.98345 0.98365 0.96061 1.21383 0.99836 1.00161 0.93670 1.21396 0.95158 0.98732 1.00352 1.21414 0.98368 0.98499 0.96520 1.21305 0.99249 1.00862 0.93313 1.21624 0.96433 0.99336 0.95197 1.21782 0.96894 1.01229 1.00011 1.21708 0.99043 0.99224 0.99644 0.89884 0.90831 0.91724 0.89526 0.91607 0.94605 0.92627 0.95568 0.96626 0.92583 0.78389 0.87539 0.89511 0.86124 0.85279 0.84987 0.84731 0.84809 0.88911 0.94335 0.92970 0.90978 0.93206 0.94431 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.46 71.24 0.67 -2.51 16 2 C 0.05 1.31 6.55 46.53 0.30 1.61 16 3 C -0.05 -1.52 5.60 29.85 0.17 -1.35 16 4 C -0.08 -3.25 5.03 30.59 0.15 -3.10 16 5 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 6 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16 7 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 8 C 0.00 0.04 5.47 84.66 0.46 0.50 16 9 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 10 Si 0.95 45.09 27.47 68.60 1.88 46.97 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 14 N -0.25 -7.02 10.08 -41.20 -0.42 -7.44 16 15 N -0.65 -13.96 4.07 -169.39 -0.69 -14.64 16 16 C 0.20 3.54 2.33 44.99 0.10 3.65 16 17 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 18 C -0.08 -1.05 4.55 29.85 0.14 -0.92 16 19 C -0.08 -1.33 4.95 -19.86 -0.10 -1.42 16 20 C -0.12 -2.06 9.20 22.27 0.20 -1.86 16 21 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 22 C -0.14 -2.27 10.05 22.27 0.22 -2.05 16 23 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 24 C -0.13 -2.07 9.70 22.27 0.22 -1.85 16 25 C -0.11 -1.79 2.74 -10.79 -0.03 -1.82 16 26 C -0.14 -2.28 8.74 71.98 0.63 -1.65 16 27 C -0.14 -3.21 8.92 71.98 0.64 -2.56 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.80 6.91 -2.39 -0.02 1.78 16 30 H 0.06 1.33 6.31 -2.39 -0.02 1.31 16 31 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 32 H 0.07 2.17 8.11 -2.39 -0.02 2.15 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 2.16 7.01 -2.39 -0.02 2.15 16 35 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 36 H 0.02 0.72 7.57 -2.39 -0.02 0.71 16 37 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 38 H 0.38 7.28 5.82 -213.32 -1.24 6.04 16 39 H 0.11 0.95 8.09 -2.39 -0.02 0.93 16 40 H 0.09 0.94 6.76 -2.39 -0.02 0.93 16 41 H 0.12 1.79 7.72 -2.91 -0.02 1.77 16 42 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 43 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 44 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 46 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.04 0.76 7.43 -2.39 -0.02 0.74 16 48 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 0.85 6.68 -2.39 -0.02 0.83 16 50 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.04 1.08 6.78 -2.39 -0.02 1.07 16 52 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -69.97 409.47 5.25 -64.71 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.43 Total: 22.30 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 4.61 Total: -50.90 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -0.81 Total: -83.09 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -69.97 5.25 -64.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841634333.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.000 kcal (2) G-P(sol) polarization free energy of solvation -69.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds