Wall clock time and date at job start Tue Mar 31 2020 11:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.35658 * 2 1 4 4 C 1.54596 * 110.31108 * 237.86065 * 2 1 3 5 5 H 1.08998 * 110.87923 * 144.60723 * 4 2 1 6 6 C 1.53006 * 110.72280 * 21.40102 * 4 2 1 7 7 C 1.54940 * 102.92431 * 263.04345 * 4 2 1 8 8 N 1.48534 * 103.22334 * 322.58412 * 7 4 2 9 9 C 1.46901 * 111.00110 * 159.72201 * 8 7 4 10 10 C 1.50700 * 109.47095 * 69.87313 * 9 8 7 11 11 C 1.38287 * 119.92426 * 269.72975 * 10 9 8 12 12 C 1.38099 * 120.07387 * 179.72743 * 11 10 9 13 13 C 1.38911 * 119.92752 * 0.54365 * 12 11 10 14 14 N 1.39674 * 120.07735 * 179.75169 * 13 12 11 15 15 C 1.46498 * 119.99765 * 179.97438 * 14 13 12 16 16 C 1.46503 * 119.99984 * 359.97438 * 14 13 12 17 17 C 1.50696 * 109.46751 * 90.00087 * 16 14 13 18 18 H 1.07998 * 120.00176 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99676 * 179.97438 * 17 16 14 20 20 N 1.31516 * 120.00017 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99974 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46758 * 60.00747 * 21 19 17 23 23 H 1.48497 * 109.47152 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47401 * 300.00742 * 21 19 17 25 25 C 1.38914 * 119.84586 * 359.72580 * 13 12 11 26 26 C 1.38105 * 119.92815 * 0.02562 * 25 13 12 27 27 C 1.47905 * 105.82012 * 39.20561 * 8 7 4 28 28 H 1.08994 * 109.91731 * 94.02799 * 27 8 7 29 29 C 1.53002 * 109.91441 * 215.11808 * 27 8 7 30 30 H 1.09002 * 109.47028 * 180.68572 * 1 2 3 31 31 H 1.08997 * 109.47046 * 300.68695 * 1 2 3 32 32 H 1.09002 * 109.47247 * 60.68635 * 1 2 3 33 33 H 1.09001 * 109.47002 * 305.04228 * 6 4 2 34 34 H 1.08993 * 109.46955 * 65.04665 * 6 4 2 35 35 H 1.09000 * 109.47050 * 185.04494 * 6 4 2 36 36 H 1.08991 * 110.66655 * 81.01600 * 7 4 2 37 37 H 1.08998 * 110.66713 * 203.98577 * 7 4 2 38 38 H 1.09003 * 109.46930 * 189.87406 * 9 8 7 39 39 H 1.08997 * 109.46787 * 309.87478 * 9 8 7 40 40 H 1.08006 * 119.96153 * 359.97438 * 11 10 9 41 41 H 1.08007 * 120.03732 * 180.27315 * 12 11 10 42 42 H 1.09003 * 109.47234 * 90.00117 * 15 14 13 43 43 H 1.08997 * 109.47201 * 209.99800 * 15 14 13 44 44 H 1.08997 * 109.47853 * 329.99929 * 15 14 13 45 45 H 1.09003 * 109.46688 * 210.00297 * 16 14 13 46 46 H 1.08997 * 109.47131 * 330.00413 * 16 14 13 47 47 H 0.97004 * 119.99784 * 179.97438 * 20 19 17 48 48 H 1.08001 * 120.03734 * 180.02562 * 25 13 12 49 49 H 1.07996 * 119.96144 * 179.97438 * 26 25 13 50 50 H 1.08998 * 109.47380 * 58.55010 * 29 27 8 51 51 H 1.09000 * 109.46833 * 178.54851 * 29 27 8 52 52 H 1.08997 * 109.47101 * 298.54549 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0666 -0.7713 -1.2277 5 1 2.9800 -0.3123 -1.6059 6 6 1.0049 -0.8453 -2.3270 7 6 2.3584 -2.1797 -0.6516 8 7 2.8809 -1.8891 0.7081 9 6 2.7668 -3.0668 1.5787 10 6 3.7434 -4.1219 1.1270 11 6 3.3558 -5.0670 0.1948 12 6 4.2499 -6.0318 -0.2255 13 6 5.5365 -6.0593 0.2975 14 7 6.4418 -7.0369 -0.1216 15 6 7.7984 -7.0638 0.4307 16 6 6.0347 -8.0352 -1.1134 17 6 6.3371 -7.5208 -2.4972 18 1 6.7879 -6.5478 -2.6251 19 6 6.0393 -8.2929 -3.6000 20 7 5.4908 -9.4781 -3.4443 21 14 6.4135 -7.6550 -5.3154 22 1 7.8706 -7.3976 -5.4407 23 1 6.0009 -8.6670 -6.3208 24 1 5.6661 -6.3932 -5.5483 25 6 5.9209 -5.1118 1.2379 26 6 5.0233 -4.1465 1.6500 27 6 2.0644 -0.7684 1.2228 28 1 1.2324 -1.1548 1.8113 29 6 2.9291 0.1530 2.0855 30 1 -0.3633 -1.0276 0.0123 31 1 -0.3633 0.5245 0.8837 32 1 -0.3634 0.5031 -0.8961 33 1 0.0910 -1.2789 -1.9210 34 1 0.7970 0.1578 -2.6993 35 1 1.3706 -1.4675 -3.1439 36 1 1.4433 -2.7690 -0.5943 37 1 3.1083 -2.6935 -1.2530 38 1 2.9899 -2.7816 2.6068 39 1 1.7528 -3.4627 1.5233 40 1 2.3538 -5.0480 -0.2079 41 1 3.9479 -6.7669 -0.9569 42 1 7.8152 -7.6902 1.3227 43 1 8.4850 -7.4705 -0.3117 44 1 8.1046 -6.0510 0.6923 45 1 6.5828 -8.9618 -0.9423 46 1 4.9650 -8.2235 -1.0216 47 1 5.2809 -10.0211 -4.2202 48 1 6.9205 -5.1300 1.6462 49 1 5.3214 -3.4100 2.3814 50 1 3.7620 0.5303 1.4922 51 1 2.3269 0.9897 2.4397 52 1 3.3142 -0.4044 2.9393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841889357.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:13 Heat of formation + Delta-G solvation = 25.331038 kcal Electronic energy + Delta-G solvation = -26971.422499 eV Core-core repulsion = 23549.152971 eV Total energy + Delta-G solvation = -3422.269527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.96421 -38.75641 -35.95390 -34.04881 -32.70547 -32.13425 -30.41894 -29.99900 -28.48878 -27.77047 -26.90230 -25.03160 -24.13683 -23.64797 -22.06588 -21.44096 -20.47363 -19.54469 -19.13550 -16.62471 -16.42441 -16.13472 -15.43918 -15.24871 -14.81090 -14.62181 -14.17238 -13.99392 -13.78563 -13.64576 -13.36583 -13.17361 -12.89063 -12.85736 -12.75054 -12.35089 -12.15301 -12.01013 -11.95305 -11.92717 -11.66254 -11.47292 -11.37936 -11.22713 -11.04221 -10.92232 -10.68124 -10.65285 -10.55393 -10.40899 -10.38584 -10.24388 -9.86402 -9.73329 -8.81098 -8.49684 -8.30194 -8.20382 -6.43555 -6.00099 -4.16657 2.15432 2.27161 3.28510 3.32702 3.36347 4.02559 4.18371 4.42199 4.44102 4.49097 4.65030 4.83774 5.02081 5.18550 5.22123 5.23315 5.28834 5.30895 5.36556 5.43685 5.53326 5.55987 5.57465 5.66133 5.67455 5.72279 5.74742 5.82396 5.85592 5.88363 5.92513 5.98292 6.03981 6.06077 6.10829 6.21205 6.25372 6.31403 6.32973 6.42946 6.47203 6.68751 6.95271 6.99163 7.09843 7.19042 7.24714 7.30665 7.39775 7.64545 7.81871 8.16815 8.29399 8.51992 8.92455 9.50115 10.96305 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013369 B = 0.003383 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.886357 B = 8273.918211 C = 9742.304928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.076 0.924 4 C -0.093 4.093 5 H 0.080 0.920 6 C -0.146 4.146 7 C 0.045 3.955 8 N -0.506 5.506 9 C 0.104 3.896 10 C -0.165 4.165 11 C -0.066 4.066 12 C -0.187 4.187 13 C 0.241 3.759 14 N -0.616 5.616 15 C 0.099 3.901 16 C 0.250 3.750 17 C -0.531 4.531 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.222 4.222 26 C -0.052 4.052 27 C 0.063 3.937 28 H 0.049 0.951 29 C -0.133 4.133 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.105 0.895 41 H 0.130 0.870 42 H 0.035 0.965 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.029 0.971 46 H 0.035 0.965 47 H 0.264 0.736 48 H 0.112 0.888 49 H 0.107 0.893 50 H 0.061 0.939 51 H 0.052 0.948 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 16.809 9.531 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.095 0.905 4 C -0.112 4.112 5 H 0.099 0.901 6 C -0.203 4.203 7 C -0.083 4.083 8 N -0.230 5.230 9 C -0.023 4.023 10 C -0.167 4.167 11 C -0.086 4.086 12 C -0.210 4.210 13 C 0.134 3.866 14 N -0.322 5.322 15 C -0.045 4.045 16 C 0.130 3.870 17 C -0.570 4.570 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.535 5.535 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.245 4.245 26 C -0.072 4.072 27 C -0.045 4.045 28 H 0.067 0.933 29 C -0.191 4.191 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.123 0.877 41 H 0.148 0.852 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.053 0.947 47 H 0.074 0.926 48 H 0.130 0.870 49 H 0.126 0.874 50 H 0.080 0.920 51 H 0.071 0.929 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.205 16.582 9.354 20.356 hybrid contribution -0.531 -0.070 -1.045 1.174 sum -7.736 16.512 8.310 20.038 Atomic orbital electron populations 1.21936 0.95068 1.01615 1.01512 1.22057 0.95396 0.99550 0.94418 0.90511 1.22101 0.98720 0.95830 0.94570 0.90129 1.21866 0.98724 1.01519 0.98232 1.23254 0.98590 0.95926 0.90486 1.64763 1.50615 1.05482 1.02160 1.20964 0.96140 0.89052 0.96160 1.19093 0.95591 0.98864 1.03195 1.20633 0.98170 0.94081 0.95686 1.20832 0.92930 1.02541 1.04680 1.17939 0.89636 0.87913 0.91116 1.47085 1.10039 1.30916 1.44187 1.21462 0.84708 1.00495 0.97876 1.19264 0.96350 0.86035 0.85350 1.21555 1.41235 1.03286 0.90957 0.92302 1.24958 0.94989 0.94777 0.99310 1.69924 1.42503 1.10312 1.30732 0.86586 0.78836 0.78642 0.83587 1.20223 1.21190 1.20090 1.20557 1.00244 0.99499 1.04247 1.20458 0.92449 0.96245 0.98031 1.22449 0.94272 0.92452 0.95329 0.93305 1.21733 0.99812 0.98237 0.99322 0.92739 0.93009 0.92158 0.92282 0.92690 0.92478 0.94015 0.89632 0.91029 0.94878 0.87665 0.85209 0.94673 0.91512 0.92680 0.95262 0.94683 0.92609 0.86977 0.87444 0.91990 0.92939 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 7.67 37.15 0.29 -0.88 16 2 C -0.10 -0.90 3.17 -89.27 -0.28 -1.18 16 3 H 0.08 0.69 7.69 -51.93 -0.40 0.29 16 4 C -0.09 -0.99 3.59 -88.75 -0.32 -1.31 16 5 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 6 C -0.15 -1.36 8.05 37.16 0.30 -1.06 16 7 C 0.05 0.57 4.99 -1.90 -0.01 0.56 16 8 N -0.51 -6.45 4.89 -224.01 -1.09 -7.55 16 9 C 0.10 1.37 4.85 -4.98 -0.02 1.35 16 10 C -0.16 -2.61 5.10 -104.59 -0.53 -3.15 16 11 C -0.07 -1.16 8.73 -39.61 -0.35 -1.50 16 12 C -0.19 -3.84 9.21 -39.38 -0.36 -4.21 16 13 C 0.24 4.96 6.55 -83.79 -0.55 4.41 16 14 N -0.62 -13.40 2.99 -181.00 -0.54 -13.94 16 15 C 0.10 1.77 10.19 59.85 0.61 2.38 16 16 C 0.25 6.32 4.91 -5.19 -0.03 6.30 16 17 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 18 H 0.06 1.66 7.81 -52.49 -0.41 1.24 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 21 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C -0.22 -3.97 9.21 -39.38 -0.36 -4.33 16 26 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 27 C 0.06 0.66 2.72 -66.64 -0.18 0.48 16 28 H 0.05 0.51 7.31 -51.93 -0.38 0.13 16 29 C -0.13 -1.26 9.33 37.16 0.35 -0.91 16 30 H 0.05 0.47 7.51 -51.93 -0.39 0.08 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 6.90 -51.93 -0.36 0.09 16 33 H 0.06 0.53 6.34 -51.93 -0.33 0.20 16 34 H 0.05 0.45 7.88 -51.93 -0.41 0.04 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.04 0.52 7.76 -51.93 -0.40 0.12 16 37 H 0.09 1.28 7.82 -51.93 -0.41 0.88 16 38 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 39 H 0.03 0.42 7.84 -51.93 -0.41 0.02 16 40 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.13 2.94 6.14 -52.48 -0.32 2.61 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.05 0.88 6.20 -51.93 -0.32 0.56 16 45 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 46 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 48 H 0.11 1.82 6.14 -52.49 -0.32 1.49 16 49 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 50 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 399.99 15.07 6.03 6.03 Total: -1.00 -28.61 399.99 -11.53 -40.14 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -9.38 Total: 1.57 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -2.26 Total: -17.61 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.90 Total: -46.52 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.61 -11.53 -40.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841889357.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.467 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds