Wall clock time and date at job start Tue Mar 31 2020 11:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.35658 * 2 1 4 4 C 1.54596 * 110.31108 * 237.86065 * 2 1 3 5 5 H 1.08998 * 110.87923 * 144.60723 * 4 2 1 6 6 C 1.53006 * 110.72280 * 21.40102 * 4 2 1 7 7 C 1.54940 * 102.92431 * 263.04345 * 4 2 1 8 8 N 1.48534 * 103.22334 * 322.58412 * 7 4 2 9 9 C 1.46901 * 111.00110 * 159.72201 * 8 7 4 10 10 C 1.50700 * 109.47095 * 69.87313 * 9 8 7 11 11 C 1.38287 * 119.92426 * 269.72975 * 10 9 8 12 12 C 1.38099 * 120.07387 * 179.72743 * 11 10 9 13 13 C 1.38911 * 119.92752 * 0.54365 * 12 11 10 14 14 N 1.39674 * 120.07735 * 179.75169 * 13 12 11 15 15 C 1.46498 * 119.99765 * 179.97438 * 14 13 12 16 16 C 1.46503 * 119.99984 * 359.97438 * 14 13 12 17 17 C 1.50696 * 109.46751 * 90.00087 * 16 14 13 18 18 H 1.07998 * 120.00176 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99676 * 179.97438 * 17 16 14 20 20 N 1.31516 * 120.00017 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99974 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46758 * 60.00747 * 21 19 17 23 23 H 1.48497 * 109.47152 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47401 * 300.00742 * 21 19 17 25 25 C 1.38914 * 119.84586 * 359.72580 * 13 12 11 26 26 C 1.38105 * 119.92815 * 0.02562 * 25 13 12 27 27 C 1.47905 * 105.82012 * 39.20561 * 8 7 4 28 28 H 1.08994 * 109.91731 * 94.02799 * 27 8 7 29 29 C 1.53002 * 109.91441 * 215.11808 * 27 8 7 30 30 H 1.09002 * 109.47028 * 180.68572 * 1 2 3 31 31 H 1.08997 * 109.47046 * 300.68695 * 1 2 3 32 32 H 1.09002 * 109.47247 * 60.68635 * 1 2 3 33 33 H 1.09001 * 109.47002 * 305.04228 * 6 4 2 34 34 H 1.08993 * 109.46955 * 65.04665 * 6 4 2 35 35 H 1.09000 * 109.47050 * 185.04494 * 6 4 2 36 36 H 1.08991 * 110.66655 * 81.01600 * 7 4 2 37 37 H 1.08998 * 110.66713 * 203.98577 * 7 4 2 38 38 H 1.09003 * 109.46930 * 189.87406 * 9 8 7 39 39 H 1.08997 * 109.46787 * 309.87478 * 9 8 7 40 40 H 1.08006 * 119.96153 * 359.97438 * 11 10 9 41 41 H 1.08007 * 120.03732 * 180.27315 * 12 11 10 42 42 H 1.09003 * 109.47234 * 90.00117 * 15 14 13 43 43 H 1.08997 * 109.47201 * 209.99800 * 15 14 13 44 44 H 1.08997 * 109.47853 * 329.99929 * 15 14 13 45 45 H 1.09003 * 109.46688 * 210.00297 * 16 14 13 46 46 H 1.08997 * 109.47131 * 330.00413 * 16 14 13 47 47 H 0.97004 * 119.99784 * 179.97438 * 20 19 17 48 48 H 1.08001 * 120.03734 * 180.02562 * 25 13 12 49 49 H 1.07996 * 119.96144 * 179.97438 * 26 25 13 50 50 H 1.08998 * 109.47380 * 58.55010 * 29 27 8 51 51 H 1.09000 * 109.46833 * 178.54851 * 29 27 8 52 52 H 1.08997 * 109.47101 * 298.54549 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0666 -0.7713 -1.2277 5 1 2.9800 -0.3123 -1.6059 6 6 1.0049 -0.8453 -2.3270 7 6 2.3584 -2.1797 -0.6516 8 7 2.8809 -1.8891 0.7081 9 6 2.7668 -3.0668 1.5787 10 6 3.7434 -4.1219 1.1270 11 6 3.3558 -5.0670 0.1948 12 6 4.2499 -6.0318 -0.2255 13 6 5.5365 -6.0593 0.2975 14 7 6.4418 -7.0369 -0.1216 15 6 7.7984 -7.0638 0.4307 16 6 6.0347 -8.0352 -1.1134 17 6 6.3371 -7.5208 -2.4972 18 1 6.7879 -6.5478 -2.6251 19 6 6.0393 -8.2929 -3.6000 20 7 5.4908 -9.4781 -3.4443 21 14 6.4135 -7.6550 -5.3154 22 1 7.8706 -7.3976 -5.4407 23 1 6.0009 -8.6670 -6.3208 24 1 5.6661 -6.3932 -5.5483 25 6 5.9209 -5.1118 1.2379 26 6 5.0233 -4.1465 1.6500 27 6 2.0644 -0.7684 1.2228 28 1 1.2324 -1.1548 1.8113 29 6 2.9291 0.1530 2.0855 30 1 -0.3633 -1.0276 0.0123 31 1 -0.3633 0.5245 0.8837 32 1 -0.3634 0.5031 -0.8961 33 1 0.0910 -1.2789 -1.9210 34 1 0.7970 0.1578 -2.6993 35 1 1.3706 -1.4675 -3.1439 36 1 1.4433 -2.7690 -0.5943 37 1 3.1083 -2.6935 -1.2530 38 1 2.9899 -2.7816 2.6068 39 1 1.7528 -3.4627 1.5233 40 1 2.3538 -5.0480 -0.2079 41 1 3.9479 -6.7669 -0.9569 42 1 7.8152 -7.6902 1.3227 43 1 8.4850 -7.4705 -0.3117 44 1 8.1046 -6.0510 0.6923 45 1 6.5828 -8.9618 -0.9423 46 1 4.9650 -8.2235 -1.0216 47 1 5.2809 -10.0211 -4.2202 48 1 6.9205 -5.1300 1.6462 49 1 5.3214 -3.4100 2.3814 50 1 3.7620 0.5303 1.4922 51 1 2.3269 0.9897 2.4397 52 1 3.3142 -0.4044 2.9393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841889357.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:13 Heat of formation + Delta-G solvation = 11.635581 kcal Electronic energy + Delta-G solvation = -26972.016378 eV Core-core repulsion = 23549.152971 eV Total energy + Delta-G solvation = -3422.863407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96871 -40.11269 -37.44902 -35.22306 -34.59740 -33.04009 -31.89248 -31.24690 -29.65424 -29.25470 -28.02080 -26.52831 -25.14964 -24.94246 -23.47494 -22.95904 -21.40720 -20.98154 -19.97145 -18.64312 -18.08740 -16.99907 -16.90075 -16.52551 -16.19185 -15.89470 -15.51157 -15.28617 -15.04683 -14.81203 -14.52559 -14.33756 -14.20034 -14.10747 -13.94515 -13.59277 -13.27018 -13.18791 -13.08176 -13.05599 -12.93905 -12.76313 -12.66577 -12.53636 -12.45738 -12.39440 -12.19447 -11.94237 -11.79057 -11.70608 -11.45396 -11.39958 -11.21112 -11.16501 -10.65121 -10.39901 -9.66400 -9.27739 -8.36821 -7.79927 -6.38552 0.70669 0.84641 1.35861 1.37851 1.46182 2.33347 2.63238 2.93636 3.05059 3.35146 3.65018 3.67196 4.00108 4.04077 4.14853 4.21490 4.25682 4.37381 4.44079 4.45576 4.53467 4.59512 4.61348 4.64320 4.68150 4.71003 4.76383 4.82025 4.86130 4.87738 4.91458 4.91961 5.00581 5.01977 5.12061 5.14771 5.16554 5.19566 5.24097 5.28809 5.32482 5.37876 5.48324 5.55581 5.58927 5.67911 5.69345 5.89605 6.06426 6.10823 6.17885 6.26968 6.49639 6.81887 6.93634 7.33318 8.82162 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013369 B = 0.003383 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.886357 B = 8273.918211 C = 9742.304928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.086 0.914 4 C -0.091 4.091 5 H 0.070 0.930 6 C -0.142 4.142 7 C 0.045 3.955 8 N -0.517 5.517 9 C 0.108 3.892 10 C -0.152 4.152 11 C -0.066 4.066 12 C -0.215 4.215 13 C 0.213 3.787 14 N -0.633 5.633 15 C 0.098 3.902 16 C 0.268 3.732 17 C -0.543 4.543 18 H 0.048 0.952 19 C 0.014 3.986 20 N -0.926 5.926 21 Si 0.960 3.040 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.274 1.274 25 C -0.217 4.217 26 C -0.050 4.050 27 C 0.062 3.938 28 H 0.054 0.946 29 C -0.130 4.130 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.038 0.962 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.009 0.991 46 H 0.010 0.990 47 H 0.268 0.732 48 H 0.133 0.867 49 H 0.140 0.860 50 H 0.052 0.948 51 H 0.071 0.929 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.282 19.871 10.676 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.104 0.896 4 C -0.110 4.110 5 H 0.089 0.911 6 C -0.200 4.200 7 C -0.083 4.083 8 N -0.242 5.242 9 C -0.020 4.020 10 C -0.155 4.155 11 C -0.086 4.086 12 C -0.238 4.238 13 C 0.108 3.892 14 N -0.341 5.341 15 C -0.045 4.045 16 C 0.146 3.854 17 C -0.582 4.582 18 H 0.066 0.934 19 C -0.186 4.186 20 N -0.566 5.566 21 Si 0.785 3.215 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.199 1.199 25 C -0.240 4.240 26 C -0.069 4.069 27 C -0.046 4.046 28 H 0.073 0.927 29 C -0.187 4.187 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.056 0.944 40 H 0.133 0.867 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.076 0.924 48 H 0.150 0.850 49 H 0.158 0.842 50 H 0.071 0.929 51 H 0.090 0.910 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.638 19.674 10.529 23.585 hybrid contribution -0.461 -0.945 -1.319 1.687 sum -8.100 18.729 9.210 22.388 Atomic orbital electron populations 1.21911 0.93861 1.01466 1.02553 1.22052 0.96334 0.99526 0.93002 0.89600 1.22073 0.98865 0.94545 0.95565 0.91111 1.21843 0.98394 1.02266 0.97475 1.23170 0.97472 0.97037 0.90615 1.64717 1.51648 1.05804 1.01983 1.20954 0.95463 0.88532 0.97028 1.19445 0.96243 0.98403 1.01383 1.20750 0.98152 0.93683 0.95969 1.20724 0.94305 1.03360 1.05407 1.18194 0.89505 0.88853 0.92635 1.46960 1.11725 1.30962 1.44411 1.21595 0.82651 1.02206 0.98005 1.18751 0.94456 0.86338 0.85845 1.21753 1.41191 1.02844 0.92400 0.93375 1.25773 0.94669 0.94922 1.03214 1.70031 1.43263 1.11385 1.31925 0.85575 0.78946 0.78099 0.78888 1.19303 1.20222 1.19936 1.20803 1.01518 0.98630 1.03027 1.20845 0.91992 0.96038 0.97980 1.22548 0.94347 0.91779 0.95892 0.92750 1.21716 0.99610 0.98554 0.98860 0.93461 0.91832 0.91317 0.91761 0.91177 0.93570 0.94095 0.92726 0.89153 0.94392 0.86688 0.88812 0.92879 0.92552 0.90404 0.97275 0.97216 0.92351 0.84957 0.84228 0.92896 0.91033 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.67 71.98 0.55 -1.31 16 2 C -0.09 -1.46 3.17 -9.92 -0.03 -1.49 16 3 H 0.09 1.27 7.69 -2.39 -0.02 1.25 16 4 C -0.09 -1.83 3.59 -9.58 -0.03 -1.86 16 5 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 6 C -0.14 -2.46 8.05 71.98 0.58 -1.88 16 7 C 0.04 1.12 4.99 86.65 0.43 1.55 16 8 N -0.52 -12.18 4.89 -862.62 -4.21 -16.39 16 9 C 0.11 2.58 4.85 85.56 0.41 2.99 16 10 C -0.15 -4.62 5.10 -19.84 -0.10 -4.72 16 11 C -0.07 -2.36 8.73 22.25 0.19 -2.16 16 12 C -0.22 -9.32 9.21 22.40 0.21 -9.11 16 13 C 0.21 8.97 6.55 38.21 0.25 9.22 16 14 N -0.63 -28.49 2.99 -726.57 -2.17 -30.66 16 15 C 0.10 3.52 10.19 127.77 1.30 4.82 16 16 C 0.27 14.39 4.91 85.63 0.42 14.81 16 17 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 18 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 19 C 0.01 0.77 5.46 84.65 0.46 1.23 16 20 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 21 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 25 C -0.22 -7.46 9.21 22.40 0.21 -7.26 16 26 C -0.05 -1.49 9.69 22.25 0.22 -1.27 16 27 C 0.06 1.12 2.72 45.06 0.12 1.25 16 28 H 0.05 0.95 7.31 -2.39 -0.02 0.93 16 29 C -0.13 -2.04 9.33 71.98 0.67 -1.36 16 30 H 0.05 0.70 7.51 -2.39 -0.02 0.68 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.81 6.90 -2.39 -0.02 0.79 16 33 H 0.06 1.04 6.34 -2.39 -0.02 1.03 16 34 H 0.07 1.00 7.88 -2.39 -0.02 0.98 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.04 1.01 7.76 -2.39 -0.02 0.99 16 37 H 0.05 1.68 7.82 -2.39 -0.02 1.66 16 38 H 0.09 1.86 8.05 -2.39 -0.02 1.85 16 39 H 0.04 0.89 7.84 -2.39 -0.02 0.87 16 40 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 41 H 0.09 4.67 6.14 -2.91 -0.02 4.65 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16 44 H 0.08 2.38 6.20 -2.39 -0.01 2.37 16 45 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 46 H 0.01 0.57 6.20 -2.39 -0.01 0.56 16 47 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 48 H 0.13 3.95 6.14 -2.91 -0.02 3.93 16 49 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 50 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -64.00 399.99 2.89 -61.11 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.86 Total: 21.47 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 6.10 Total: -27.48 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -6.10 Total: -101.85 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.00 2.89 -61.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841889357.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.745 kcal (2) G-P(sol) polarization free energy of solvation -63.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds