Wall clock time and date at job start Tue Mar 31 2020 11:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.46139 * 2 1 4 4 C 1.54378 * 110.41381 * 237.58051 * 2 1 3 5 5 H 1.09001 * 110.32317 * 336.26588 * 4 2 1 6 6 C 1.52995 * 110.32339 * 98.47341 * 4 2 1 7 7 C 1.54253 * 105.06189 * 217.37245 * 4 2 1 8 8 H 1.09001 * 110.32138 * 241.10561 * 7 4 2 9 9 C 1.53001 * 110.41569 * 118.93993 * 7 4 2 10 10 C 1.54381 * 105.06195 * 359.97438 * 7 4 2 11 11 N 1.48558 * 104.59228 * 23.85656 * 10 7 4 12 12 C 1.46906 * 111.00058 * 200.95803 * 11 10 7 13 13 C 1.50700 * 109.47059 * 69.87633 * 12 11 10 14 14 C 1.38293 * 119.92008 * 269.72719 * 13 12 11 15 15 C 1.38108 * 120.06814 * 179.72295 * 14 13 12 16 16 C 1.38907 * 119.92408 * 0.54828 * 15 14 13 17 17 N 1.39681 * 120.06868 * 179.70074 * 16 15 14 18 18 C 1.46504 * 119.99750 * 180.02562 * 17 16 15 19 19 C 1.46497 * 120.00269 * 0.02562 * 17 16 15 20 20 C 1.50705 * 109.47019 * 89.99934 * 19 17 16 21 21 H 1.07993 * 120.00073 * 359.97438 * 20 19 17 22 22 C 1.37876 * 119.99374 * 180.02562 * 20 19 17 23 23 N 1.31512 * 120.00592 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99550 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47478 * 89.99767 * 24 22 20 26 26 H 1.48499 * 109.46937 * 209.99944 * 24 22 20 27 27 H 1.48503 * 109.47061 * 329.99528 * 24 22 20 28 28 C 1.38907 * 119.85811 * 359.72650 * 16 15 14 29 29 C 1.38109 * 119.92055 * 359.97438 * 28 16 15 30 30 H 1.08992 * 109.47087 * 299.04567 * 1 2 3 31 31 H 1.09000 * 109.46887 * 59.04764 * 1 2 3 32 32 H 1.09000 * 109.46979 * 179.04110 * 1 2 3 33 33 H 1.08995 * 109.47511 * 177.09526 * 6 4 2 34 34 H 1.09004 * 109.47364 * 297.09199 * 6 4 2 35 35 H 1.09004 * 109.47283 * 57.09049 * 6 4 2 36 36 H 1.09000 * 109.46977 * 302.85905 * 9 7 4 37 37 H 1.09003 * 109.46589 * 62.85634 * 9 7 4 38 38 H 1.08994 * 109.47319 * 182.85581 * 9 7 4 39 39 H 1.09000 * 110.41404 * 265.07776 * 10 7 4 40 40 H 1.09000 * 110.41350 * 142.63382 * 10 7 4 41 41 H 1.09003 * 109.46997 * 189.87203 * 12 11 10 42 42 H 1.08999 * 109.47193 * 309.87166 * 12 11 10 43 43 H 1.07998 * 119.96423 * 359.97438 * 14 13 12 44 44 H 1.08007 * 120.03265 * 180.27031 * 15 14 13 45 45 H 1.08993 * 109.46900 * 90.00031 * 18 17 16 46 46 H 1.09000 * 109.47290 * 210.00566 * 18 17 16 47 47 H 1.09001 * 109.47038 * 329.99943 * 18 17 16 48 48 H 1.09004 * 109.47268 * 209.99866 * 19 17 16 49 49 H 1.09001 * 109.46866 * 329.99722 * 19 17 16 50 50 H 0.97002 * 120.00428 * 180.02562 * 23 22 20 51 51 H 1.07999 * 120.04280 * 179.97438 * 28 16 15 52 52 H 1.07996 * 119.96021 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0685 -0.7757 -1.2213 5 1 1.3236 -1.4881 -1.5758 6 6 2.4520 0.1948 -2.3402 7 6 3.3177 -1.5189 -0.7052 8 1 4.2042 -1.1924 -1.2490 9 6 3.1355 -3.0314 -0.8472 10 6 3.4294 -1.1294 0.7845 11 7 2.0486 -0.7455 1.1755 12 6 2.0576 0.1027 2.3749 13 6 2.6329 1.4525 2.0314 14 6 3.9925 1.6740 2.1527 15 6 4.5238 2.9082 1.8332 16 6 3.6892 3.9308 1.4005 17 7 4.2225 5.1821 1.0825 18 6 3.3408 6.2597 0.6268 19 6 5.6633 5.4168 1.2046 20 6 6.3398 5.0777 -0.0987 21 1 5.7550 4.7225 -0.9342 22 6 7.7055 5.2201 -0.2239 23 7 8.4177 5.6522 0.7937 24 14 8.5441 4.7991 -1.8391 25 1 8.5889 6.0060 -2.7030 26 1 9.9275 4.3305 -1.5712 27 1 7.7826 3.7258 -2.5273 28 6 2.3232 3.7066 1.2852 29 6 1.7993 2.4682 1.6004 30 1 -0.3633 0.4989 0.8984 31 1 -0.3633 0.5286 -0.8813 32 1 -0.3633 -1.0275 -0.0172 33 1 2.8778 -0.3626 -3.1746 34 1 1.5643 0.7306 -2.6767 35 1 3.1870 0.9078 -1.9668 36 1 2.2398 -3.3416 -0.3090 37 1 3.0327 -3.2875 -1.9017 38 1 4.0041 -3.5426 -0.4322 39 1 4.1078 -0.2850 0.9068 40 1 3.7693 -1.9799 1.3754 41 1 1.0383 0.2247 2.7413 42 1 2.6675 -0.3664 3.1471 43 1 4.6401 0.8799 2.4937 44 1 5.5863 3.0792 1.9239 45 1 2.9902 6.8304 1.4867 46 1 3.8895 6.9178 -0.0469 47 1 2.4865 5.8326 0.1015 48 1 5.8417 6.4651 1.4446 49 1 6.0678 4.7885 1.9982 50 1 9.3785 5.7527 0.7055 51 1 1.6716 4.4997 0.9494 52 1 0.7374 2.2934 1.5114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841889358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:16 Heat of formation + Delta-G solvation = 25.563856 kcal Electronic energy + Delta-G solvation = -27867.827863 eV Core-core repulsion = 24445.568432 eV Total energy + Delta-G solvation = -3422.259431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20163 -38.55785 -35.95433 -33.74092 -32.66365 -32.30025 -30.50209 -29.79306 -28.78233 -27.82346 -26.67310 -24.84329 -24.21533 -23.38203 -22.20275 -21.65032 -20.09435 -19.66006 -19.37256 -16.68793 -16.48248 -15.89533 -15.32107 -15.04146 -14.81026 -14.39569 -14.34225 -13.97498 -13.76893 -13.53094 -13.33043 -13.13749 -12.97643 -12.83259 -12.65614 -12.38781 -12.21271 -12.12398 -11.83837 -11.59598 -11.50298 -11.46443 -11.28685 -11.05216 -11.00721 -10.91666 -10.84981 -10.71815 -10.49255 -10.42502 -10.28624 -10.17793 -9.92500 -9.77778 -8.84389 -8.54685 -8.32254 -8.21900 -6.51012 -6.05908 -4.21577 2.03035 2.16681 3.22772 3.29945 3.34016 4.10037 4.18947 4.37316 4.49127 4.65688 4.67508 4.95276 5.17679 5.24139 5.30023 5.33104 5.42456 5.48713 5.51093 5.53731 5.57802 5.60449 5.64839 5.70956 5.78008 5.81328 5.92085 5.95511 5.95960 6.00533 6.03382 6.07045 6.09622 6.17866 6.22556 6.23701 6.30596 6.31846 6.36584 6.38637 6.51507 6.58085 6.87963 6.96504 7.00321 7.15477 7.22445 7.24225 7.31549 7.53769 7.76761 8.11018 8.21650 8.43430 8.87247 9.45453 10.91705 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012417 B = 0.004204 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.379482 B = 6658.159405 C = 7704.810168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.049 3.951 3 H 0.080 0.920 4 C -0.086 4.086 5 H 0.074 0.926 6 C -0.145 4.145 7 C -0.095 4.095 8 H 0.073 0.927 9 C -0.137 4.137 10 C 0.029 3.971 11 N -0.499 5.499 12 C 0.094 3.906 13 C -0.206 4.206 14 C -0.064 4.064 15 C -0.188 4.188 16 C 0.243 3.757 17 N -0.615 5.615 18 C 0.098 3.902 19 C 0.249 3.751 20 C -0.531 4.531 21 H 0.059 0.941 22 C 0.063 3.937 23 N -0.894 5.894 24 Si 0.895 3.105 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.273 1.273 28 C -0.222 4.222 29 C -0.060 4.060 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.131 0.869 45 H 0.036 0.964 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.030 0.970 49 H 0.035 0.965 50 H 0.264 0.736 51 H 0.113 0.887 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 -11.411 -0.587 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.059 4.059 3 H 0.097 0.903 4 C -0.105 4.105 5 H 0.092 0.908 6 C -0.203 4.203 7 C -0.113 4.113 8 H 0.091 0.909 9 C -0.194 4.194 10 C -0.099 4.099 11 N -0.221 5.221 12 C -0.033 4.033 13 C -0.210 4.210 14 C -0.083 4.083 15 C -0.210 4.210 16 C 0.136 3.864 17 N -0.320 5.320 18 C -0.046 4.046 19 C 0.129 3.871 20 C -0.570 4.570 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.722 3.278 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.198 1.198 28 C -0.245 4.245 29 C -0.080 4.080 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.127 0.873 44 H 0.149 0.851 45 H 0.054 0.946 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.131 0.869 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.771 -11.616 -0.437 18.021 hybrid contribution 1.203 0.711 -1.096 1.776 sum -12.568 -10.905 -1.533 16.710 Atomic orbital electron populations 1.21676 0.94647 1.01643 1.01041 1.22949 0.95340 0.98114 0.89529 0.90258 1.21979 0.96798 0.96835 0.94882 0.90756 1.21865 1.01446 0.99147 0.97848 1.21944 0.97991 0.95651 0.95759 0.90872 1.21785 1.01737 0.94898 1.00967 1.23244 0.91178 1.00371 0.95145 1.65730 1.17447 1.35778 1.03187 1.21085 1.00534 0.88708 0.93020 1.19915 0.94146 0.96853 1.10112 1.20690 0.93992 0.95921 0.97742 1.20880 1.00467 0.92823 1.06843 1.17946 0.91660 0.86015 0.90820 1.47114 1.08717 1.07886 1.68279 1.21475 0.94219 0.90542 0.98360 1.19287 0.73516 0.97111 0.97153 1.21557 0.92279 1.44692 0.98497 0.92319 1.24950 0.97243 0.95003 0.96772 1.69926 1.06915 1.46127 1.30366 0.86541 0.78801 0.78784 0.83637 1.20581 1.21036 1.19818 1.20566 0.93705 0.98342 1.11929 1.20551 0.98130 0.92140 0.97151 0.92902 0.92802 0.92465 0.92837 0.92805 0.92252 0.92186 0.93226 0.93037 0.92424 0.90719 0.90769 0.90976 0.87293 0.85133 0.94585 0.91430 0.92712 0.95208 0.94667 0.92613 0.86925 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.24 37.16 0.34 -1.09 16 2 C 0.05 0.61 1.92 -66.08 -0.13 0.48 16 3 H 0.08 1.17 4.47 -51.93 -0.23 0.94 16 4 C -0.09 -1.01 2.86 -89.24 -0.26 -1.27 16 5 H 0.07 0.83 7.41 -51.93 -0.38 0.44 16 6 C -0.15 -1.76 8.91 37.15 0.33 -1.42 16 7 C -0.09 -1.12 3.30 -89.24 -0.29 -1.41 16 8 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 9 C -0.14 -1.38 8.91 37.16 0.33 -1.05 16 10 C 0.03 0.36 5.88 -2.18 -0.01 0.35 16 11 N -0.50 -6.30 5.33 -223.58 -1.19 -7.49 16 12 C 0.09 1.21 5.58 -4.97 -0.03 1.18 16 13 C -0.21 -3.09 3.84 -104.58 -0.40 -3.49 16 14 C -0.06 -1.07 8.03 -39.61 -0.32 -1.39 16 15 C -0.19 -3.73 9.21 -39.38 -0.36 -4.10 16 16 C 0.24 4.83 6.55 -83.79 -0.55 4.28 16 17 N -0.61 -12.99 2.99 -181.00 -0.54 -13.53 16 18 C 0.10 1.71 10.19 59.85 0.61 2.31 16 19 C 0.25 6.19 4.91 -5.19 -0.03 6.16 16 20 C -0.53 -14.35 9.39 -34.44 -0.32 -14.67 16 21 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.44 13.29 55.43 0.74 -24.71 16 24 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 28 C -0.22 -3.78 9.21 -39.38 -0.36 -4.14 16 29 C -0.06 -0.91 7.48 -39.61 -0.30 -1.21 16 30 H 0.05 0.56 7.07 -51.93 -0.37 0.19 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.83 5.25 -51.93 -0.27 0.56 16 40 H 0.07 0.88 7.86 -51.93 -0.41 0.47 16 41 H 0.07 0.89 7.83 -51.93 -0.41 0.49 16 42 H 0.07 0.88 8.02 -51.93 -0.42 0.47 16 43 H 0.11 1.66 7.53 -52.49 -0.39 1.27 16 44 H 0.13 2.89 6.14 -52.48 -0.32 2.57 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 47 H 0.05 0.84 6.20 -51.93 -0.32 0.52 16 48 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 50 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.11 1.74 6.14 -52.49 -0.32 1.42 16 52 H 0.11 1.41 7.18 -52.49 -0.38 1.04 16 LS Contribution 393.83 15.07 5.93 5.93 Total: -1.00 -27.76 393.83 -11.06 -38.82 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -9.14 Total: 3.72 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -1.84 Total: -18.87 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -1.00 Total: -45.73 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.76 -11.06 -38.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841889358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.380 kcal (2) G-P(sol) polarization free energy of solvation -27.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds