Wall clock time and date at job start Tue Mar 31 2020 11:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.46139 * 2 1 4 4 C 1.54378 * 110.41381 * 237.58051 * 2 1 3 5 5 H 1.09001 * 110.32317 * 336.26588 * 4 2 1 6 6 C 1.52995 * 110.32339 * 98.47341 * 4 2 1 7 7 C 1.54253 * 105.06189 * 217.37245 * 4 2 1 8 8 H 1.09001 * 110.32138 * 241.10561 * 7 4 2 9 9 C 1.53001 * 110.41569 * 118.93993 * 7 4 2 10 10 C 1.54381 * 105.06195 * 359.97438 * 7 4 2 11 11 N 1.48558 * 104.59228 * 23.85656 * 10 7 4 12 12 C 1.46906 * 111.00058 * 200.95803 * 11 10 7 13 13 C 1.50700 * 109.47059 * 69.87633 * 12 11 10 14 14 C 1.38293 * 119.92008 * 269.72719 * 13 12 11 15 15 C 1.38108 * 120.06814 * 179.72295 * 14 13 12 16 16 C 1.38907 * 119.92408 * 0.54828 * 15 14 13 17 17 N 1.39681 * 120.06868 * 179.70074 * 16 15 14 18 18 C 1.46504 * 119.99750 * 180.02562 * 17 16 15 19 19 C 1.46497 * 120.00269 * 0.02562 * 17 16 15 20 20 C 1.50705 * 109.47019 * 89.99934 * 19 17 16 21 21 H 1.07993 * 120.00073 * 359.97438 * 20 19 17 22 22 C 1.37876 * 119.99374 * 180.02562 * 20 19 17 23 23 N 1.31512 * 120.00592 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99550 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47478 * 89.99767 * 24 22 20 26 26 H 1.48499 * 109.46937 * 209.99944 * 24 22 20 27 27 H 1.48503 * 109.47061 * 329.99528 * 24 22 20 28 28 C 1.38907 * 119.85811 * 359.72650 * 16 15 14 29 29 C 1.38109 * 119.92055 * 359.97438 * 28 16 15 30 30 H 1.08992 * 109.47087 * 299.04567 * 1 2 3 31 31 H 1.09000 * 109.46887 * 59.04764 * 1 2 3 32 32 H 1.09000 * 109.46979 * 179.04110 * 1 2 3 33 33 H 1.08995 * 109.47511 * 177.09526 * 6 4 2 34 34 H 1.09004 * 109.47364 * 297.09199 * 6 4 2 35 35 H 1.09004 * 109.47283 * 57.09049 * 6 4 2 36 36 H 1.09000 * 109.46977 * 302.85905 * 9 7 4 37 37 H 1.09003 * 109.46589 * 62.85634 * 9 7 4 38 38 H 1.08994 * 109.47319 * 182.85581 * 9 7 4 39 39 H 1.09000 * 110.41404 * 265.07776 * 10 7 4 40 40 H 1.09000 * 110.41350 * 142.63382 * 10 7 4 41 41 H 1.09003 * 109.46997 * 189.87203 * 12 11 10 42 42 H 1.08999 * 109.47193 * 309.87166 * 12 11 10 43 43 H 1.07998 * 119.96423 * 359.97438 * 14 13 12 44 44 H 1.08007 * 120.03265 * 180.27031 * 15 14 13 45 45 H 1.08993 * 109.46900 * 90.00031 * 18 17 16 46 46 H 1.09000 * 109.47290 * 210.00566 * 18 17 16 47 47 H 1.09001 * 109.47038 * 329.99943 * 18 17 16 48 48 H 1.09004 * 109.47268 * 209.99866 * 19 17 16 49 49 H 1.09001 * 109.46866 * 329.99722 * 19 17 16 50 50 H 0.97002 * 120.00428 * 180.02562 * 23 22 20 51 51 H 1.07999 * 120.04280 * 179.97438 * 28 16 15 52 52 H 1.07996 * 119.96021 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0685 -0.7757 -1.2213 5 1 1.3236 -1.4881 -1.5758 6 6 2.4520 0.1948 -2.3402 7 6 3.3177 -1.5189 -0.7052 8 1 4.2042 -1.1924 -1.2490 9 6 3.1355 -3.0314 -0.8472 10 6 3.4294 -1.1294 0.7845 11 7 2.0486 -0.7455 1.1755 12 6 2.0576 0.1027 2.3749 13 6 2.6329 1.4525 2.0314 14 6 3.9925 1.6740 2.1527 15 6 4.5238 2.9082 1.8332 16 6 3.6892 3.9308 1.4005 17 7 4.2225 5.1821 1.0825 18 6 3.3408 6.2597 0.6268 19 6 5.6633 5.4168 1.2046 20 6 6.3398 5.0777 -0.0987 21 1 5.7550 4.7225 -0.9342 22 6 7.7055 5.2201 -0.2239 23 7 8.4177 5.6522 0.7937 24 14 8.5441 4.7991 -1.8391 25 1 8.5889 6.0060 -2.7030 26 1 9.9275 4.3305 -1.5712 27 1 7.7826 3.7258 -2.5273 28 6 2.3232 3.7066 1.2852 29 6 1.7993 2.4682 1.6004 30 1 -0.3633 0.4989 0.8984 31 1 -0.3633 0.5286 -0.8813 32 1 -0.3633 -1.0275 -0.0172 33 1 2.8778 -0.3626 -3.1746 34 1 1.5643 0.7306 -2.6767 35 1 3.1870 0.9078 -1.9668 36 1 2.2398 -3.3416 -0.3090 37 1 3.0327 -3.2875 -1.9017 38 1 4.0041 -3.5426 -0.4322 39 1 4.1078 -0.2850 0.9068 40 1 3.7693 -1.9799 1.3754 41 1 1.0383 0.2247 2.7413 42 1 2.6675 -0.3664 3.1471 43 1 4.6401 0.8799 2.4937 44 1 5.5863 3.0792 1.9239 45 1 2.9902 6.8304 1.4867 46 1 3.8895 6.9178 -0.0469 47 1 2.4865 5.8326 0.1015 48 1 5.8417 6.4651 1.4446 49 1 6.0678 4.7885 1.9982 50 1 9.3785 5.7527 0.7055 51 1 1.6716 4.4997 0.9494 52 1 0.7374 2.2934 1.5114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841889358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:15 Heat of formation + Delta-G solvation = 12.040290 kcal Electronic energy + Delta-G solvation = -27868.414289 eV Core-core repulsion = 24445.568432 eV Total energy + Delta-G solvation = -3422.845857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33515 -39.86422 -37.40267 -35.12436 -34.45294 -33.25716 -31.90195 -31.07438 -29.88840 -29.47191 -27.86088 -26.38827 -25.26580 -24.71664 -23.52954 -23.08339 -21.37862 -20.69322 -20.51812 -18.66755 -18.10788 -16.97531 -16.88605 -16.28497 -16.21367 -15.77418 -15.57038 -15.37522 -14.96587 -14.75354 -14.52229 -14.38073 -14.17619 -14.07303 -13.93876 -13.68611 -13.33401 -13.25037 -13.15547 -13.07318 -12.88941 -12.78445 -12.65717 -12.57223 -12.40843 -12.26246 -12.17019 -11.88919 -11.84822 -11.75468 -11.46268 -11.42344 -11.33479 -11.09136 -10.67170 -10.38935 -9.67685 -9.30794 -8.39144 -7.83501 -6.40539 0.64332 0.79359 1.33514 1.34701 1.45429 2.31005 2.59672 3.00822 3.03400 3.27721 3.70165 3.72606 3.98915 4.01348 4.15248 4.18367 4.35168 4.38044 4.41516 4.51734 4.57666 4.60358 4.63656 4.67336 4.67596 4.70825 4.78867 4.82581 4.85180 4.91338 4.94233 4.97203 5.02564 5.07908 5.08812 5.16710 5.17682 5.19915 5.25357 5.27382 5.31430 5.40688 5.49268 5.54437 5.55373 5.63343 5.66201 5.82169 6.03818 6.08381 6.15297 6.21295 6.46279 6.79195 6.89674 7.31393 8.80289 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012417 B = 0.004204 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.379482 B = 6658.159405 C = 7704.810168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.047 3.953 3 H 0.056 0.944 4 C -0.084 4.084 5 H 0.088 0.912 6 C -0.142 4.142 7 C -0.097 4.097 8 H 0.059 0.941 9 C -0.129 4.129 10 C 0.027 3.973 11 N -0.492 5.492 12 C 0.096 3.904 13 C -0.190 4.190 14 C -0.064 4.064 15 C -0.217 4.217 16 C 0.216 3.784 17 N -0.631 5.631 18 C 0.098 3.902 19 C 0.267 3.733 20 C -0.540 4.540 21 H 0.047 0.953 22 C 0.015 3.985 23 N -0.926 5.926 24 Si 0.959 3.041 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.273 1.273 28 C -0.217 4.217 29 C -0.051 4.051 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.029 0.971 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.009 0.991 50 H 0.267 0.733 51 H 0.133 0.867 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.402 -13.285 -1.505 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.061 4.061 3 H 0.074 0.926 4 C -0.103 4.103 5 H 0.106 0.894 6 C -0.200 4.200 7 C -0.116 4.116 8 H 0.078 0.922 9 C -0.187 4.187 10 C -0.101 4.101 11 N -0.214 5.214 12 C -0.032 4.032 13 C -0.193 4.193 14 C -0.084 4.084 15 C -0.240 4.240 16 C 0.111 3.889 17 N -0.339 5.339 18 C -0.045 4.045 19 C 0.146 3.854 20 C -0.579 4.579 21 H 0.066 0.934 22 C -0.185 4.185 23 N -0.566 5.566 24 Si 0.784 3.216 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.198 1.198 28 C -0.240 4.240 29 C -0.070 4.070 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.136 0.864 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.076 0.924 51 H 0.150 0.850 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.480 -13.504 -1.351 21.349 hybrid contribution 1.970 1.197 -0.772 2.431 sum -14.510 -12.307 -2.123 19.144 Atomic orbital electron populations 1.21654 0.92860 1.02319 1.01757 1.22963 0.96691 0.96756 0.89692 0.92635 1.21993 0.96946 0.96822 0.94495 0.89353 1.21826 1.01038 0.98808 0.98280 1.21963 0.97624 0.97077 0.94899 0.92216 1.21719 1.01999 0.93265 1.01677 1.23261 0.90917 0.99847 0.96121 1.65787 1.17042 1.35347 1.03195 1.21181 1.01521 0.87118 0.93355 1.20221 0.93123 0.98112 1.07886 1.20810 0.95305 0.94856 0.97386 1.20753 0.98904 0.94774 1.09540 1.18194 0.93019 0.85466 0.92253 1.46970 1.07437 1.09476 1.69983 1.21602 0.94086 0.89762 0.99035 1.18759 0.76248 0.94937 0.95477 1.21739 0.92750 1.44534 0.98888 0.93436 1.25748 0.97858 0.94785 1.00073 1.70030 1.07257 1.47008 1.32259 0.85542 0.77736 0.78725 0.79625 1.19447 1.20332 1.19833 1.20799 0.92367 0.99715 1.11111 1.20899 0.99640 0.91098 0.95403 0.92364 0.91952 0.91816 0.91930 0.91882 0.95194 0.92006 0.92305 0.92589 0.94778 0.89748 0.88868 0.90277 0.86421 0.88933 0.92894 0.92518 0.90362 0.97292 0.97269 0.92356 0.84974 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.24 71.98 0.67 -1.63 16 2 C 0.05 1.06 1.92 45.07 0.09 1.14 16 3 H 0.06 1.53 4.47 -2.39 -0.01 1.52 16 4 C -0.08 -1.79 2.86 -9.90 -0.03 -1.82 16 5 H 0.09 1.68 7.41 -2.39 -0.02 1.66 16 6 C -0.14 -3.25 8.91 71.98 0.64 -2.61 16 7 C -0.10 -2.15 3.30 -9.90 -0.03 -2.18 16 8 H 0.06 1.48 7.71 -2.39 -0.02 1.46 16 9 C -0.13 -2.30 8.91 71.98 0.64 -1.66 16 10 C 0.03 0.64 5.88 86.45 0.51 1.15 16 11 N -0.49 -11.14 5.33 -861.27 -4.59 -15.73 16 12 C 0.10 2.19 5.58 85.56 0.48 2.66 16 13 C -0.19 -5.39 3.84 -19.84 -0.08 -5.47 16 14 C -0.06 -2.20 8.03 22.25 0.18 -2.02 16 15 C -0.22 -9.16 9.21 22.40 0.21 -8.95 16 16 C 0.22 8.81 6.55 38.21 0.25 9.06 16 17 N -0.63 -27.74 2.99 -726.55 -2.17 -29.92 16 18 C 0.10 3.41 10.19 127.77 1.30 4.71 16 19 C 0.27 14.17 4.91 85.64 0.42 14.59 16 20 C -0.54 -30.55 9.39 25.60 0.24 -30.31 16 21 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 22 C 0.01 0.83 5.46 84.65 0.46 1.29 16 23 N -0.93 -54.58 13.29 21.45 0.28 -54.30 16 24 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 28 C -0.22 -7.10 9.21 22.40 0.21 -6.89 16 29 C -0.05 -1.42 7.48 22.25 0.17 -1.26 16 30 H 0.06 0.98 7.07 -2.39 -0.02 0.96 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.03 0.84 8.12 -2.38 -0.02 0.82 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.03 0.99 5.25 -2.39 -0.01 0.97 16 40 H 0.08 1.86 7.86 -2.39 -0.02 1.84 16 41 H 0.09 1.84 7.83 -2.39 -0.02 1.82 16 42 H 0.08 1.73 8.02 -2.39 -0.02 1.71 16 43 H 0.12 3.71 7.53 -2.91 -0.02 3.68 16 44 H 0.09 4.55 6.14 -2.91 -0.02 4.53 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 46 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 47 H 0.08 2.30 6.20 -2.39 -0.01 2.29 16 48 H 0.01 0.51 8.07 -2.38 -0.02 0.49 16 49 H 0.01 0.54 6.20 -2.39 -0.01 0.52 16 50 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 51 H 0.13 3.75 6.14 -2.91 -0.02 3.73 16 52 H 0.14 3.05 7.18 -2.91 -0.02 3.02 16 Total: -1.00 -62.38 393.83 2.74 -59.64 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.87 Total: 24.16 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 6.31 Total: -30.20 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -6.48 Total: -99.95 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -62.38 2.74 -59.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841889358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.681 kcal (2) G-P(sol) polarization free energy of solvation -62.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds