Wall clock time and date at job start Tue Mar 31 2020 11:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47287 * 2 1 4 4 H 1.08999 * 109.47038 * 54.92212 * 3 2 1 5 5 C 1.50701 * 109.47281 * 174.92405 * 3 2 1 6 6 H 1.07997 * 119.99860 * 119.99589 * 5 3 2 7 7 C 1.37880 * 120.00127 * 300.00387 * 5 3 2 8 8 N 1.31518 * 119.99667 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00037 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47442 * 59.99668 * 9 7 5 11 11 H 1.48502 * 109.47049 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47083 * 299.99352 * 9 7 5 13 13 N 1.46903 * 109.47246 * 294.92181 * 3 2 1 14 14 C 1.46900 * 110.99795 * 154.12916 * 13 3 2 15 15 C 1.50696 * 109.46757 * 185.62206 * 14 13 3 16 16 C 1.38309 * 119.92874 * 269.73282 * 15 14 13 17 17 C 1.38083 * 120.07558 * 179.72802 * 16 15 14 18 18 C 1.38930 * 119.92392 * 0.54732 * 17 16 15 19 19 N 1.39677 * 120.07545 * 179.70657 * 18 17 16 20 20 C 1.46848 * 111.00219 * 64.22479 * 19 18 17 21 21 C 1.53031 * 109.52687 * 174.16280 * 20 19 18 22 22 C 1.53117 * 109.27865 * 59.17740 * 21 20 19 23 23 C 1.53117 * 109.16451 * 302.35107 * 22 21 20 24 24 C 1.46851 * 110.99782 * 300.01936 * 19 18 17 25 25 C 1.38893 * 119.85254 * 359.72269 * 18 17 16 26 26 C 1.50700 * 120.03760 * 180.02562 * 25 18 17 27 27 C 1.38121 * 119.92182 * 0.02562 * 25 18 17 28 28 H 1.08994 * 109.47414 * 180.49352 * 1 2 3 29 29 H 1.09002 * 109.47109 * 300.49405 * 1 2 3 30 30 H 1.09000 * 109.47210 * 60.48981 * 1 2 3 31 31 H 1.09001 * 109.47088 * 239.99891 * 2 1 3 32 32 H 1.09001 * 109.47455 * 120.00275 * 2 1 3 33 33 H 0.97001 * 119.99999 * 180.02562 * 8 7 5 34 34 H 1.00900 * 111.00338 * 278.09228 * 13 3 2 35 35 H 1.08997 * 109.47489 * 305.62274 * 14 13 3 36 36 H 1.09000 * 109.46847 * 65.63062 * 14 13 3 37 37 H 1.08000 * 119.96099 * 359.97348 * 16 15 14 38 38 H 1.08001 * 120.03823 * 180.26637 * 17 16 15 39 39 H 1.09004 * 109.46414 * 294.18266 * 20 19 18 40 40 H 1.09010 * 109.45955 * 54.14474 * 20 19 18 41 41 H 1.09003 * 109.50216 * 299.23897 * 21 20 19 42 42 H 1.08998 * 109.53836 * 179.14400 * 21 20 19 43 43 H 1.09001 * 109.52395 * 182.44109 * 22 21 20 44 44 H 1.08999 * 109.57232 * 62.29014 * 22 21 20 45 45 H 1.09005 * 109.49838 * 297.71312 * 23 22 21 46 46 H 1.08995 * 109.53781 * 177.61607 * 23 22 21 47 47 H 1.09002 * 109.45979 * 305.85020 * 24 19 18 48 48 H 1.08991 * 109.46359 * 65.83261 * 24 19 18 49 49 H 1.09007 * 109.46853 * 269.97816 * 26 25 18 50 50 H 1.09004 * 109.47154 * 29.98004 * 26 25 18 51 51 H 1.08996 * 109.47084 * 149.98103 * 26 25 18 52 52 H 1.08006 * 119.96193 * 179.97438 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9819 0.8410 5 6 3.5418 1.4443 0.1257 6 1 4.1480 1.8885 -0.6499 7 6 4.1418 0.8789 1.2308 8 7 3.4035 0.3383 2.1755 9 14 6.0032 0.8818 1.3869 10 1 6.4978 2.2820 1.3873 11 1 6.3945 0.2188 2.6568 12 1 6.5972 0.1473 0.2412 13 7 1.6530 2.0987 -1.2560 14 6 1.5540 3.5539 -1.0809 15 6 1.0235 4.1771 -2.3463 16 6 1.9010 4.5929 -3.3312 17 6 1.4180 5.1591 -4.4942 18 6 0.0494 5.3215 -4.6696 19 7 -0.4423 5.8995 -5.8422 20 6 -0.1359 5.0633 -7.0099 21 6 -0.8120 5.6503 -8.2509 22 6 -0.3055 7.0778 -8.4751 23 6 -0.5935 7.9152 -7.2260 24 6 0.0763 7.2626 -6.0146 25 6 -0.8288 4.9080 -3.6762 26 6 -2.3141 5.0816 -3.8623 27 6 -0.3391 4.3376 -2.5175 28 1 -0.3634 -1.0275 0.0089 29 1 -0.3633 0.5215 0.8855 30 1 -0.3633 0.5062 -0.8943 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8255 -0.0592 2.9531 34 1 2.2959 1.8667 -1.9983 35 1 0.8774 3.7753 -0.2555 36 1 2.5408 3.9614 -0.8613 37 1 2.9651 4.4708 -3.1921 38 1 2.1036 5.4797 -5.2647 39 1 0.9429 5.0349 -7.1632 40 1 -0.5051 4.0520 -6.8392 41 1 -1.8919 5.6662 -8.1038 42 1 -0.5722 5.0383 -9.1204 43 1 -0.8166 7.5152 -9.3327 44 1 0.7683 7.0592 -8.6616 45 1 -1.6700 7.9668 -7.0627 46 1 -0.1975 8.9215 -7.3625 47 1 -0.1388 7.8487 -5.1211 48 1 1.1540 7.2238 -6.1728 49 1 -2.6181 6.0529 -3.4721 50 1 -2.5565 5.0243 -4.9235 51 1 -2.8421 4.2931 -3.3260 52 1 -1.0214 4.0162 -1.7444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846980853.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:51 Heat of formation + Delta-G solvation = 6.692076 kcal Electronic energy + Delta-G solvation = -26658.689619 eV Core-core repulsion = 23235.611846 eV Total energy + Delta-G solvation = -3423.077773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31479 -38.20501 -36.15131 -34.10688 -32.68545 -32.13375 -31.12666 -31.06279 -29.21615 -26.80409 -26.37542 -24.86311 -23.30407 -23.25746 -22.27950 -22.01433 -19.95784 -19.69040 -19.40463 -17.15332 -16.72201 -15.62156 -15.21314 -15.11474 -14.86153 -14.73591 -14.22427 -14.10226 -13.83240 -13.70815 -13.32974 -13.21992 -13.16802 -12.87722 -12.66711 -12.47258 -12.36930 -12.12856 -11.73041 -11.50088 -11.45122 -11.30214 -11.17782 -11.07762 -10.95977 -10.88120 -10.79148 -10.68313 -10.63194 -10.46994 -10.14102 -9.59424 -9.50983 -9.07443 -8.54981 -8.51668 -8.38729 -8.18536 -7.24796 -6.00580 -4.13826 1.50307 1.62818 3.26883 3.32293 3.34483 3.71283 3.90913 4.38294 4.55554 4.64072 4.66036 5.00308 5.03373 5.07381 5.16436 5.18368 5.26003 5.28086 5.36945 5.40922 5.58358 5.61437 5.63352 5.64683 5.68351 5.77871 5.79596 5.82216 5.85338 5.89870 5.95759 6.06005 6.10665 6.20270 6.41072 6.44679 6.49289 6.53743 6.60943 6.72625 6.73131 6.85793 7.01038 7.06446 7.14903 7.19373 7.43690 7.51162 7.58775 7.76955 8.08553 8.13670 8.32101 8.64591 8.98698 9.53733 10.99432 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.002660 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.432335 B =10525.175487 C =11227.762981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.547 4.547 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.682 5.682 14 C 0.101 3.899 15 C -0.058 4.058 16 C -0.113 4.113 17 C -0.145 4.145 18 C 0.069 3.931 19 N -0.495 5.495 20 C 0.060 3.940 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.116 4.116 24 C 0.060 3.940 25 C -0.064 4.064 26 C -0.101 4.101 27 C -0.098 4.098 28 H 0.024 0.976 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.090 0.910 33 H 0.262 0.738 34 H 0.328 0.672 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.035 0.965 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.035 0.965 49 H 0.062 0.938 50 H 0.073 0.927 51 H 0.058 0.942 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 12.744 -17.525 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.586 4.586 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.029 4.029 15 C -0.058 4.058 16 C -0.132 4.132 17 C -0.166 4.166 18 C -0.024 4.024 19 N -0.216 5.216 20 C -0.067 4.067 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.066 4.066 25 C -0.065 4.065 26 C -0.158 4.158 27 C -0.117 4.117 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.053 0.947 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.053 0.947 49 H 0.081 0.919 50 H 0.092 0.908 51 H 0.077 0.923 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.453 12.573 -17.201 23.732 hybrid contribution 3.143 0.125 0.168 3.150 sum -7.310 12.698 -17.033 22.467 Atomic orbital electron populations 1.21697 0.98985 0.98351 1.00404 1.21490 0.92132 0.99157 1.01623 1.19164 0.92799 0.91273 0.86013 0.94990 1.21828 0.92768 1.38419 1.05565 0.92969 1.24929 0.97901 0.94962 0.95695 1.69868 1.34897 1.38134 1.09366 0.86718 0.86077 0.78175 0.77378 1.20417 1.21206 1.20295 1.60932 1.55042 1.04960 1.10141 1.20773 0.98989 0.90400 0.92726 1.20144 0.93272 0.96017 0.96379 1.20932 0.99603 0.99213 0.93475 1.21452 0.95377 1.01597 0.98129 1.18442 0.90924 1.01024 0.92028 1.59482 1.59341 1.02037 1.00789 1.22131 0.98208 0.96882 0.89487 1.21593 1.01179 0.95953 0.96686 1.21582 1.00876 0.95741 0.97740 1.21593 1.01648 0.98150 0.94018 1.22114 0.96766 0.89000 0.98752 1.19734 0.95799 0.97974 0.92948 1.20597 0.91144 1.01183 1.02865 1.20905 0.95017 0.98896 0.96905 0.95688 0.94513 0.93281 0.95153 0.89166 0.92800 0.85596 0.91238 0.94568 0.86455 0.87126 0.94689 0.90560 0.91039 0.91559 0.91896 0.92364 0.91036 0.91620 0.90716 0.94715 0.91917 0.90830 0.92326 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.80 37.16 0.36 -2.48 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.28 1.97 -68.86 -0.14 5.14 16 4 H 0.03 0.87 7.70 -51.93 -0.40 0.47 16 5 C -0.55 -14.61 8.47 -34.44 -0.29 -14.90 16 6 H 0.05 1.38 7.73 -52.49 -0.41 0.98 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.87 11.29 55.43 0.63 -24.25 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.68 -14.24 5.67 -109.22 -0.62 -14.86 16 14 C 0.10 1.88 5.64 -4.98 -0.03 1.86 16 15 C -0.06 -0.93 5.44 -104.59 -0.57 -1.50 16 16 C -0.11 -1.70 9.69 -39.61 -0.38 -2.09 16 17 C -0.15 -1.97 8.70 -39.38 -0.34 -2.31 16 18 C 0.07 0.91 4.66 -83.79 -0.39 0.52 16 19 N -0.50 -5.44 3.57 -171.15 -0.61 -6.05 16 20 C 0.06 0.60 5.17 -3.84 -0.02 0.58 16 21 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 22 C -0.12 -0.88 6.00 -26.61 -0.16 -1.04 16 23 C -0.12 -0.90 6.09 -26.65 -0.16 -1.06 16 24 C 0.06 0.59 5.11 -3.83 -0.02 0.57 16 25 C -0.06 -0.86 5.90 -104.42 -0.62 -1.48 16 26 C -0.10 -1.14 9.77 36.01 0.35 -0.79 16 27 C -0.10 -1.47 9.35 -39.61 -0.37 -1.84 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.98 7.77 -51.93 -0.40 0.58 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.33 6.90 8.45 -39.29 -0.33 6.57 16 35 H 0.07 1.31 7.86 -51.93 -0.41 0.91 16 36 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 37 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.11 1.35 7.13 -52.49 -0.37 0.97 16 39 H 0.03 0.36 7.55 -51.93 -0.39 -0.03 16 40 H 0.08 0.82 8.11 -51.92 -0.42 0.40 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 48 H 0.03 0.35 7.33 -51.93 -0.38 -0.03 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.81 7.46 -51.93 -0.39 0.43 16 51 H 0.06 0.62 8.09 -51.93 -0.42 0.21 16 52 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -27.32 403.12 -12.41 -39.73 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -9.68 Total: 6.15 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -3.18 Total: -22.83 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.60 Total: -45.16 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -27.32 -12.41 -39.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846980853.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.419 kcal (2) G-P(sol) polarization free energy of solvation -27.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds