Wall clock time and date at job start Tue Mar 31 2020 11:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47287 * 2 1 4 4 H 1.08999 * 109.47038 * 54.92212 * 3 2 1 5 5 C 1.50701 * 109.47281 * 174.92405 * 3 2 1 6 6 H 1.07997 * 119.99860 * 119.99589 * 5 3 2 7 7 C 1.37880 * 120.00127 * 300.00387 * 5 3 2 8 8 N 1.31518 * 119.99667 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00037 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47442 * 59.99668 * 9 7 5 11 11 H 1.48502 * 109.47049 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47083 * 299.99352 * 9 7 5 13 13 N 1.46903 * 109.47246 * 294.92181 * 3 2 1 14 14 C 1.46900 * 110.99795 * 154.12916 * 13 3 2 15 15 C 1.50696 * 109.46757 * 185.62206 * 14 13 3 16 16 C 1.38309 * 119.92874 * 269.73282 * 15 14 13 17 17 C 1.38083 * 120.07558 * 179.72802 * 16 15 14 18 18 C 1.38930 * 119.92392 * 0.54732 * 17 16 15 19 19 N 1.39677 * 120.07545 * 179.70657 * 18 17 16 20 20 C 1.46848 * 111.00219 * 64.22479 * 19 18 17 21 21 C 1.53031 * 109.52687 * 174.16280 * 20 19 18 22 22 C 1.53117 * 109.27865 * 59.17740 * 21 20 19 23 23 C 1.53117 * 109.16451 * 302.35107 * 22 21 20 24 24 C 1.46851 * 110.99782 * 300.01936 * 19 18 17 25 25 C 1.38893 * 119.85254 * 359.72269 * 18 17 16 26 26 C 1.50700 * 120.03760 * 180.02562 * 25 18 17 27 27 C 1.38121 * 119.92182 * 0.02562 * 25 18 17 28 28 H 1.08994 * 109.47414 * 180.49352 * 1 2 3 29 29 H 1.09002 * 109.47109 * 300.49405 * 1 2 3 30 30 H 1.09000 * 109.47210 * 60.48981 * 1 2 3 31 31 H 1.09001 * 109.47088 * 239.99891 * 2 1 3 32 32 H 1.09001 * 109.47455 * 120.00275 * 2 1 3 33 33 H 0.97001 * 119.99999 * 180.02562 * 8 7 5 34 34 H 1.00900 * 111.00338 * 278.09228 * 13 3 2 35 35 H 1.08997 * 109.47489 * 305.62274 * 14 13 3 36 36 H 1.09000 * 109.46847 * 65.63062 * 14 13 3 37 37 H 1.08000 * 119.96099 * 359.97348 * 16 15 14 38 38 H 1.08001 * 120.03823 * 180.26637 * 17 16 15 39 39 H 1.09004 * 109.46414 * 294.18266 * 20 19 18 40 40 H 1.09010 * 109.45955 * 54.14474 * 20 19 18 41 41 H 1.09003 * 109.50216 * 299.23897 * 21 20 19 42 42 H 1.08998 * 109.53836 * 179.14400 * 21 20 19 43 43 H 1.09001 * 109.52395 * 182.44109 * 22 21 20 44 44 H 1.08999 * 109.57232 * 62.29014 * 22 21 20 45 45 H 1.09005 * 109.49838 * 297.71312 * 23 22 21 46 46 H 1.08995 * 109.53781 * 177.61607 * 23 22 21 47 47 H 1.09002 * 109.45979 * 305.85020 * 24 19 18 48 48 H 1.08991 * 109.46359 * 65.83261 * 24 19 18 49 49 H 1.09007 * 109.46853 * 269.97816 * 26 25 18 50 50 H 1.09004 * 109.47154 * 29.98004 * 26 25 18 51 51 H 1.08996 * 109.47084 * 149.98103 * 26 25 18 52 52 H 1.08006 * 119.96193 * 179.97438 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9819 0.8410 5 6 3.5418 1.4443 0.1257 6 1 4.1480 1.8885 -0.6499 7 6 4.1418 0.8789 1.2308 8 7 3.4035 0.3383 2.1755 9 14 6.0032 0.8818 1.3869 10 1 6.4978 2.2820 1.3873 11 1 6.3945 0.2188 2.6568 12 1 6.5972 0.1473 0.2412 13 7 1.6530 2.0987 -1.2560 14 6 1.5540 3.5539 -1.0809 15 6 1.0235 4.1771 -2.3463 16 6 1.9010 4.5929 -3.3312 17 6 1.4180 5.1591 -4.4942 18 6 0.0494 5.3215 -4.6696 19 7 -0.4423 5.8995 -5.8422 20 6 -0.1359 5.0633 -7.0099 21 6 -0.8120 5.6503 -8.2509 22 6 -0.3055 7.0778 -8.4751 23 6 -0.5935 7.9152 -7.2260 24 6 0.0763 7.2626 -6.0146 25 6 -0.8288 4.9080 -3.6762 26 6 -2.3141 5.0816 -3.8623 27 6 -0.3391 4.3376 -2.5175 28 1 -0.3634 -1.0275 0.0089 29 1 -0.3633 0.5215 0.8855 30 1 -0.3633 0.5062 -0.8943 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8255 -0.0592 2.9531 34 1 2.2959 1.8667 -1.9983 35 1 0.8774 3.7753 -0.2555 36 1 2.5408 3.9614 -0.8613 37 1 2.9651 4.4708 -3.1921 38 1 2.1036 5.4797 -5.2647 39 1 0.9429 5.0349 -7.1632 40 1 -0.5051 4.0520 -6.8392 41 1 -1.8919 5.6662 -8.1038 42 1 -0.5722 5.0383 -9.1204 43 1 -0.8166 7.5152 -9.3327 44 1 0.7683 7.0592 -8.6616 45 1 -1.6700 7.9668 -7.0627 46 1 -0.1975 8.9215 -7.3625 47 1 -0.1388 7.8487 -5.1211 48 1 1.1540 7.2238 -6.1728 49 1 -2.6181 6.0529 -3.4721 50 1 -2.5565 5.0243 -4.9235 51 1 -2.8421 4.2931 -3.3260 52 1 -1.0214 4.0162 -1.7444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846980853.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:49 Heat of formation + Delta-G solvation = -5.434863 kcal Electronic energy + Delta-G solvation = -26659.215483 eV Core-core repulsion = 23235.611846 eV Total energy + Delta-G solvation = -3423.603637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29473 -39.23217 -37.84326 -35.31457 -34.05179 -33.53956 -32.77308 -31.75938 -30.53413 -28.38387 -27.58409 -26.18680 -24.71642 -23.95955 -23.85688 -23.03677 -21.44717 -21.00407 -20.43202 -18.75194 -18.07726 -16.89016 -16.74740 -16.28799 -16.01966 -15.76694 -15.57022 -15.27911 -15.06655 -14.70625 -14.62284 -14.34300 -14.22389 -14.03363 -13.93831 -13.72764 -13.56945 -13.20321 -13.18226 -13.12891 -12.98099 -12.67854 -12.55029 -12.49471 -12.20087 -12.13177 -12.12286 -11.93887 -11.59473 -11.52270 -11.40612 -11.33379 -11.22065 -11.02059 -10.47330 -9.65469 -9.45170 -9.34308 -9.03170 -8.06744 -6.29087 0.35152 0.49415 1.37982 1.38466 1.46083 2.38769 2.74369 2.85147 3.13061 3.77572 3.85710 3.93597 3.99213 4.01128 4.04653 4.13460 4.32321 4.42971 4.45057 4.47359 4.52701 4.58775 4.64760 4.67305 4.76422 4.78888 4.84880 4.88037 4.92250 4.93548 4.94257 4.97713 5.03215 5.09336 5.14704 5.17168 5.25089 5.28307 5.38993 5.42182 5.47656 5.50180 5.50677 5.61675 5.66041 5.75666 5.80488 5.96328 6.05599 6.08941 6.18515 6.35861 6.50618 6.77070 6.98497 7.42180 8.89789 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.002660 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.432335 B =10525.175487 C =11227.762981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.102 4.102 3 C 0.222 3.778 4 H 0.001 0.999 5 C -0.562 4.562 6 H 0.049 0.951 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.672 5.672 14 C 0.109 3.891 15 C -0.073 4.073 16 C -0.121 4.121 17 C -0.144 4.144 18 C 0.076 3.924 19 N -0.496 5.496 20 C 0.058 3.942 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.111 4.111 24 C 0.058 3.942 25 C -0.068 4.068 26 C -0.095 4.095 27 C -0.104 4.104 28 H 0.044 0.956 29 H 0.031 0.969 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.263 0.737 34 H 0.328 0.672 35 H 0.062 0.938 36 H 0.020 0.980 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.031 0.969 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.032 0.968 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.064 0.936 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.802 13.742 -19.708 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.019 0.981 5 C -0.601 4.601 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.300 5.300 14 C -0.021 4.021 15 C -0.074 4.074 16 C -0.140 4.140 17 C -0.164 4.164 18 C -0.018 4.018 19 N -0.217 5.217 20 C -0.068 4.068 21 C -0.149 4.149 22 C -0.158 4.158 23 C -0.149 4.149 24 C -0.068 4.068 25 C -0.069 4.069 26 C -0.152 4.152 27 C -0.123 4.123 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.144 0.856 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.050 0.950 49 H 0.091 0.909 50 H 0.096 0.904 51 H 0.082 0.918 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.994 13.582 -19.402 26.111 hybrid contribution 3.273 -0.130 0.793 3.370 sum -7.722 13.452 -18.609 24.226 Atomic orbital electron populations 1.21551 0.96372 0.99733 1.00516 1.21355 0.94452 0.98270 0.99973 1.18946 0.91644 0.91592 0.86450 0.98109 1.22135 0.94054 1.38293 1.05614 0.93290 1.25660 1.02105 0.94722 0.95476 1.69996 1.36472 1.38668 1.09721 0.85743 0.81032 0.78201 0.77442 1.20064 1.20800 1.19751 1.60866 1.54397 1.06326 1.08436 1.20661 0.98087 0.89050 0.94259 1.19881 0.94093 0.97732 0.95697 1.20963 0.99456 0.99692 0.93903 1.21590 0.96041 1.01032 0.97760 1.18646 0.90680 0.99849 0.92658 1.59569 1.59195 1.02648 1.00330 1.22180 0.98224 0.96483 0.89957 1.21573 1.00882 0.96556 0.95902 1.21584 1.01040 0.95146 0.97980 1.21574 1.01410 0.98733 0.93185 1.22181 0.96857 0.88184 0.99586 1.19993 0.97255 0.97263 0.92381 1.20593 0.89416 1.01940 1.03258 1.20959 0.94446 0.99251 0.97669 0.93646 0.94981 0.92486 0.95486 0.91971 0.92817 0.85597 0.91949 0.96203 0.86615 0.85715 0.95045 0.91546 0.91062 0.90345 0.90389 0.92379 0.91088 0.90238 0.91351 0.94952 0.90909 0.90423 0.91754 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.80 71.98 0.71 -4.40 16 2 C -0.10 -4.96 5.45 30.59 0.17 -4.80 16 3 C 0.22 11.21 1.97 44.17 0.09 11.30 16 4 H 0.00 0.05 7.70 -2.39 -0.02 0.03 16 5 C -0.56 -30.68 8.47 25.60 0.22 -30.46 16 6 H 0.05 2.64 7.73 -2.91 -0.02 2.62 16 7 C 0.02 1.14 5.29 84.65 0.45 1.58 16 8 N -0.91 -52.20 11.29 21.45 0.24 -51.96 16 9 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 13 N -0.67 -28.66 5.67 -499.47 -2.83 -31.50 16 14 C 0.11 4.21 5.64 85.56 0.48 4.69 16 15 C -0.07 -2.41 5.44 -19.84 -0.11 -2.51 16 16 C -0.12 -3.64 9.69 22.25 0.22 -3.42 16 17 C -0.14 -3.77 8.70 22.40 0.19 -3.57 16 18 C 0.08 1.88 4.66 38.21 0.18 2.06 16 19 N -0.50 -10.01 3.57 -695.38 -2.48 -12.50 16 20 C 0.06 1.06 5.17 86.32 0.45 1.50 16 21 C -0.11 -1.48 6.09 30.64 0.19 -1.29 16 22 C -0.12 -1.39 6.00 30.67 0.18 -1.21 16 23 C -0.11 -1.42 6.09 30.65 0.19 -1.24 16 24 C 0.06 1.02 5.11 86.32 0.44 1.46 16 25 C -0.07 -1.77 5.90 -19.74 -0.12 -1.88 16 26 C -0.10 -1.98 9.77 71.24 0.70 -1.28 16 27 C -0.10 -3.09 9.35 22.25 0.21 -2.89 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 2.23 7.77 -2.39 -0.02 2.21 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 3.40 5.95 -2.39 -0.01 3.38 16 33 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.33 14.04 8.45 -89.69 -0.76 13.28 16 35 H 0.06 2.46 7.86 -2.39 -0.02 2.44 16 36 H 0.02 0.82 8.06 -2.39 -0.02 0.80 16 37 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 38 H 0.12 2.87 7.13 -2.91 -0.02 2.85 16 39 H 0.03 0.60 7.55 -2.38 -0.02 0.58 16 40 H 0.07 1.34 8.11 -2.38 -0.02 1.32 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 48 H 0.03 0.58 7.33 -2.39 -0.02 0.57 16 49 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 50 H 0.08 1.55 7.46 -2.39 -0.02 1.53 16 51 H 0.06 1.26 8.09 -2.39 -0.02 1.24 16 52 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -58.60 403.12 1.88 -56.73 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.11 Total: 29.99 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 4.82 Total: -36.36 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -5.07 Total: -95.95 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -58.60 1.88 -56.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846980853.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.291 kcal (2) G-P(sol) polarization free energy of solvation -58.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds