Wall clock time and date at job start Tue Mar 31 2020 11:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47460 * 2 1 4 4 C 1.53002 * 109.47488 * 120.00110 * 2 1 3 5 5 C 1.53003 * 109.46921 * 64.64733 * 4 2 1 6 6 N 1.46896 * 115.55042 * 55.47047 * 5 4 2 7 7 C 1.46899 * 111.00030 * 56.17801 * 6 5 4 8 8 C 1.50701 * 109.46826 * 174.42977 * 7 6 5 9 9 C 1.38294 * 119.92316 * 90.00387 * 8 7 6 10 10 C 1.38099 * 120.07190 * 179.97438 * 9 8 7 11 11 C 1.38911 * 119.92838 * 359.97438 * 10 9 8 12 12 N 1.39677 * 120.07505 * 179.97438 * 11 10 9 13 13 C 1.46502 * 119.99823 * 0.02562 * 12 11 10 14 14 C 1.46494 * 119.99865 * 180.02562 * 12 11 10 15 15 C 1.50693 * 109.47408 * 90.00526 * 14 12 11 16 16 H 1.08001 * 120.00074 * 359.97438 * 15 14 12 17 17 C 1.37874 * 120.00438 * 180.02562 * 15 14 12 18 18 N 1.31518 * 120.00189 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00307 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46982 * 89.99912 * 19 17 15 21 21 H 1.48505 * 109.47157 * 209.99906 * 19 17 15 22 22 H 1.48498 * 109.46911 * 329.99492 * 19 17 15 23 23 C 1.38909 * 119.84825 * 0.25711 * 11 10 9 24 24 C 1.38100 * 119.92678 * 359.48513 * 23 11 10 25 25 C 1.53003 * 117.49929 * 201.14267 * 5 4 2 26 26 C 1.53003 * 117.49801 * 269.80084 * 5 4 2 27 27 H 1.08991 * 109.47378 * 174.06592 * 1 2 3 28 28 H 1.09004 * 109.46782 * 294.06510 * 1 2 3 29 29 H 1.09002 * 109.47319 * 54.06001 * 1 2 3 30 30 H 1.09002 * 109.46742 * 240.00063 * 2 1 3 31 31 H 1.09001 * 109.47626 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.46980 * 300.00464 * 3 2 1 33 33 H 1.08993 * 109.47256 * 60.00082 * 3 2 1 34 34 H 1.09001 * 109.46868 * 304.64762 * 4 2 1 35 35 H 1.08994 * 109.47513 * 184.64422 * 4 2 1 36 36 H 1.00906 * 111.00010 * 180.13788 * 6 5 4 37 37 H 1.09003 * 109.47069 * 54.43513 * 7 6 5 38 38 H 1.08993 * 109.47153 * 294.43042 * 7 6 5 39 39 H 1.07997 * 119.96055 * 359.97438 * 9 8 7 40 40 H 1.08008 * 120.03257 * 179.97438 * 10 9 8 41 41 H 1.08994 * 109.47276 * 269.99615 * 13 12 11 42 42 H 1.09000 * 109.47482 * 30.00180 * 13 12 11 43 43 H 1.09000 * 109.46911 * 149.99933 * 13 12 11 44 44 H 1.09011 * 109.47119 * 210.00129 * 14 12 11 45 45 H 1.09001 * 109.47142 * 329.99682 * 14 12 11 46 46 H 0.96995 * 120.00646 * 180.02562 * 18 17 15 47 47 H 1.08002 * 120.03424 * 179.72711 * 23 11 10 48 48 H 1.07997 * 119.96480 * 180.25367 * 24 23 11 49 49 H 1.08993 * 117.49849 * 215.00648 * 25 5 4 50 50 H 1.09009 * 117.49304 * 0.02562 * 25 5 4 51 51 H 1.09005 * 117.49698 * 359.97438 * 26 5 4 52 52 H 1.08993 * 117.49975 * 144.97631 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6278 -2.1936 1.1921 6 7 2.0500 -2.9236 -0.0107 7 6 3.5058 -2.8446 -0.1905 8 6 3.9165 -3.7142 -1.3507 9 6 3.9622 -3.1847 -2.6275 10 6 4.3386 -3.9787 -3.6928 11 6 4.6722 -5.3104 -3.4809 12 7 5.0528 -6.1163 -4.5563 13 6 5.1012 -5.5572 -5.9095 14 6 5.4037 -7.5207 -4.3309 15 6 4.1676 -8.3736 -4.4556 16 1 3.2157 -7.9153 -4.6799 17 6 4.2516 -9.7388 -4.2824 18 7 5.4106 -10.2969 -4.0088 19 14 2.7192 -10.7959 -4.4364 20 1 2.5600 -11.2345 -5.8461 21 1 2.8493 -11.9871 -3.5590 22 1 1.5301 -10.0066 -4.0261 23 6 4.6206 -5.8403 -2.1978 24 6 4.2484 -5.0394 -1.1361 25 6 1.5885 -2.9679 2.5111 26 6 0.2832 -2.5753 1.8145 27 1 -0.3634 -1.0221 -0.1062 28 1 -0.3633 0.4191 0.9384 29 1 -0.3634 0.6032 -0.8320 30 1 1.8932 -0.5138 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6104 -0.2578 2.1373 35 1 3.1268 -0.6498 1.2918 36 1 1.7412 -3.8837 0.0220 37 1 4.0031 -3.1896 0.7161 38 1 3.7916 -1.8121 -0.3912 39 1 3.7032 -2.1491 -2.7915 40 1 4.3737 -3.5646 -4.6898 41 1 4.1322 -5.6872 -6.3912 42 1 5.3407 -4.4952 -5.8556 43 1 5.8669 -6.0733 -6.4887 44 1 6.1384 -7.8352 -5.0723 45 1 5.8243 -7.6343 -3.3318 46 1 5.4699 -11.2574 -3.8873 47 1 4.8750 -6.8764 -2.0303 48 1 4.2121 -5.4496 -0.1378 49 1 1.8761 -4.0189 2.4864 50 1 1.8560 -2.4282 3.4196 51 1 -0.3074 -1.7776 2.2651 52 1 -0.2881 -3.3678 1.3314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850404569.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:10 Heat of formation + Delta-G solvation = 26.264529 kcal Electronic energy + Delta-G solvation = -26410.761305 eV Core-core repulsion = 22988.532257 eV Total energy + Delta-G solvation = -3422.229048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.59654 -39.85163 -37.45947 -35.93115 -34.93009 -34.03930 -31.88808 -30.60267 -29.58417 -28.27125 -27.87311 -27.09525 -25.59969 -23.73697 -23.18034 -22.92725 -21.32182 -21.01821 -20.08482 -18.65796 -18.15687 -17.08484 -16.75231 -16.57586 -16.27055 -15.69506 -15.48346 -15.34680 -15.11233 -14.81750 -14.48534 -14.45404 -14.35125 -14.08428 -14.03154 -13.58099 -13.18038 -13.14780 -13.04222 -13.01438 -12.85987 -12.68883 -12.61332 -12.53706 -12.36625 -12.27959 -12.16305 -11.98051 -11.76827 -11.67547 -11.43694 -11.29782 -11.03914 -10.78950 -10.65186 -10.40231 -9.66752 -9.08273 -8.37095 -7.80880 -6.38505 0.70788 0.83438 1.35565 1.36525 1.47774 2.33246 2.62866 2.82598 3.04822 3.08820 3.45421 3.77737 3.90770 4.02016 4.07636 4.16184 4.25172 4.28811 4.32987 4.40586 4.46483 4.53552 4.64006 4.72010 4.75631 4.79633 4.85209 4.87791 4.89782 4.93221 4.96726 5.01120 5.02637 5.05491 5.08901 5.13747 5.18092 5.19189 5.25849 5.28027 5.33441 5.46437 5.58628 5.61110 5.67296 5.69385 5.71296 5.92509 6.06489 6.17417 6.25859 6.45920 6.49395 6.81952 6.93211 7.33394 8.82085 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.002796 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.120186 B =10010.628597 C =10906.104111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.065 4.065 5 C 0.059 3.941 6 N -0.648 5.648 7 C 0.126 3.874 8 C -0.160 4.160 9 C -0.046 4.046 10 C -0.218 4.218 11 C 0.214 3.786 12 N -0.632 5.632 13 C 0.099 3.901 14 C 0.266 3.734 15 C -0.541 4.541 16 H 0.047 0.953 17 C 0.013 3.987 18 N -0.927 5.927 19 Si 0.961 3.039 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.272 1.272 23 C -0.216 4.216 24 C -0.068 4.068 25 C -0.223 4.223 26 C -0.165 4.165 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.339 0.661 37 H 0.033 0.967 38 H 0.086 0.914 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.038 0.962 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.010 0.990 45 H 0.011 0.989 46 H 0.267 0.733 47 H 0.094 0.906 48 H 0.120 0.880 49 H 0.082 0.918 50 H 0.101 0.899 51 H 0.108 0.892 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 21.999 10.259 25.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 C -0.204 4.204 4 C -0.103 4.103 5 C -0.034 4.034 6 N -0.277 5.277 7 C -0.001 4.001 8 C -0.163 4.163 9 C -0.066 4.066 10 C -0.240 4.240 11 C 0.109 3.891 12 N -0.340 5.340 13 C -0.044 4.044 14 C 0.145 3.855 15 C -0.580 4.580 16 H 0.066 0.934 17 C -0.187 4.187 18 N -0.567 5.567 19 Si 0.785 3.215 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.197 1.197 23 C -0.239 4.239 24 C -0.087 4.087 25 C -0.263 4.263 26 C -0.202 4.202 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.157 0.843 37 H 0.052 0.948 38 H 0.104 0.896 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.028 0.972 45 H 0.029 0.971 46 H 0.076 0.924 47 H 0.112 0.888 48 H 0.138 0.862 49 H 0.101 0.899 50 H 0.120 0.880 51 H 0.127 0.873 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.978 22.232 9.654 25.222 hybrid contribution -0.185 -2.217 0.439 2.267 sum -7.164 20.015 10.093 23.533 Atomic orbital electron populations 1.21790 0.95341 1.01464 1.01092 1.20938 0.95952 0.95441 0.98122 1.21854 1.00904 0.95820 1.01805 1.21123 1.00621 0.89970 0.98613 1.21714 1.00318 0.94590 0.86748 1.60366 1.12437 1.18531 1.36391 1.20557 0.87172 0.98811 0.93588 1.19531 1.07326 0.93984 0.95472 1.20861 0.95127 0.99472 0.91093 1.20817 1.10494 0.92057 1.00657 1.18216 0.92314 0.90857 0.87726 1.46961 1.71323 1.10176 1.05529 1.21593 1.00830 0.99288 0.82640 1.18790 0.94399 0.76904 0.95442 1.21766 0.95241 0.92475 1.48478 0.93437 1.25773 0.99215 0.99115 0.94548 1.70031 1.25771 1.11820 1.49038 0.85514 0.79431 0.78076 0.78430 1.19562 1.20343 1.19720 1.20746 1.10427 0.99985 0.92713 1.20809 0.96871 0.93541 0.97493 1.23682 1.03110 1.00946 0.98541 1.23172 0.90617 1.03564 1.02880 0.92998 0.92689 0.93413 0.91510 0.92747 0.92776 0.92405 0.90622 0.91677 0.84297 0.94829 0.89599 0.84239 0.84999 0.94302 0.89708 0.91998 0.97187 0.97130 0.92368 0.88758 0.86194 0.89944 0.88018 0.87328 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.55 71.98 0.62 -1.51 16 2 C -0.09 -1.33 2.84 -10.79 -0.03 -1.36 16 3 C -0.15 -1.90 9.19 71.98 0.66 -1.23 16 4 C -0.07 -0.97 4.04 30.60 0.12 -0.85 16 5 C 0.06 1.02 1.43 3.53 0.01 1.02 16 6 N -0.65 -13.84 6.10 -474.15 -2.89 -16.73 16 7 C 0.13 2.81 5.33 85.56 0.46 3.26 16 8 C -0.16 -4.58 5.34 -19.84 -0.11 -4.69 16 9 C -0.05 -1.33 9.69 22.25 0.22 -1.11 16 10 C -0.22 -7.24 9.21 22.40 0.21 -7.04 16 11 C 0.21 8.79 6.55 38.21 0.25 9.04 16 12 N -0.63 -28.00 2.99 -726.57 -2.17 -30.17 16 13 C 0.10 3.50 10.23 127.77 1.31 4.80 16 14 C 0.27 14.14 4.95 85.63 0.42 14.57 16 15 C -0.54 -30.79 9.39 25.60 0.24 -30.55 16 16 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 17 C 0.01 0.72 5.46 84.65 0.46 1.18 16 18 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 19 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 C -0.22 -9.08 9.20 22.40 0.21 -8.87 16 24 C -0.07 -2.29 9.69 22.25 0.22 -2.08 16 25 C -0.22 -3.73 10.08 30.62 0.31 -3.42 16 26 C -0.16 -2.66 8.49 30.62 0.26 -2.40 16 27 H 0.05 0.92 6.64 -2.39 -0.02 0.90 16 28 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 1.28 7.49 -2.39 -0.02 1.27 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 35 H 0.06 0.98 7.32 -2.39 -0.02 0.96 16 36 H 0.34 7.98 8.53 -89.69 -0.76 7.21 16 37 H 0.03 0.74 8.07 -2.39 -0.02 0.72 16 38 H 0.09 1.73 6.96 -2.39 -0.02 1.71 16 39 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.13 3.82 6.14 -2.91 -0.02 3.80 16 41 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 2.40 6.20 -2.39 -0.01 2.39 16 43 H 0.06 2.12 7.89 -2.39 -0.02 2.10 16 44 H 0.01 0.56 7.89 -2.38 -0.02 0.55 16 45 H 0.01 0.61 6.21 -2.39 -0.01 0.60 16 46 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 47 H 0.09 4.59 6.15 -2.91 -0.02 4.57 16 48 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 49 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.10 1.48 8.14 -2.38 -0.02 1.47 16 51 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 52 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -62.25 410.15 3.18 -59.07 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.11 Total: 27.05 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 5.82 Total: -31.25 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -4.78 Total: -101.41 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -62.25 3.18 -59.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850404569.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.331 kcal (2) G-P(sol) polarization free energy of solvation -62.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds