Wall clock time and date at job start Tue Mar 31 2020 11:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00345 * 2 1 4 4 C 1.53001 * 109.46766 * 125.00114 * 3 2 1 5 5 C 1.52999 * 109.46889 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47308 * 60.00327 * 5 4 3 7 7 C 1.53007 * 109.47194 * 300.00053 * 5 4 3 8 8 N 1.46901 * 109.47323 * 180.02562 * 5 4 3 9 9 C 1.46897 * 111.00182 * 179.97438 * 8 5 4 10 10 C 1.50703 * 109.46910 * 179.97438 * 9 8 5 11 11 C 1.38286 * 119.92478 * 90.00241 * 10 9 8 12 12 C 1.38101 * 120.07469 * 180.02562 * 11 10 9 13 13 C 1.38911 * 119.92611 * 359.97438 * 12 11 10 14 14 N 1.39677 * 120.07774 * 179.97438 * 13 12 11 15 15 C 1.46508 * 119.99671 * 359.97438 * 14 13 12 16 16 C 1.46500 * 120.00191 * 180.02562 * 14 13 12 17 17 C 1.50706 * 109.46949 * 89.99699 * 16 14 13 18 18 H 1.07999 * 120.00196 * 0.02562 * 17 16 14 19 19 C 1.37879 * 119.99394 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00338 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99426 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47776 * 59.99746 * 21 19 17 23 23 H 1.48503 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47028 * 299.99350 * 21 19 17 25 25 C 1.38915 * 119.84858 * 0.25685 * 13 12 11 26 26 C 1.38101 * 119.92539 * 359.48545 * 25 13 12 27 27 H 1.07994 * 120.00528 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00124 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00124 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46982 * 5.00623 * 3 2 1 31 31 H 1.08997 * 109.47760 * 245.00305 * 3 2 1 32 32 H 1.09005 * 109.47309 * 60.00622 * 4 3 2 33 33 H 1.08996 * 109.47642 * 300.00717 * 4 3 2 34 34 H 1.09007 * 109.47385 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47158 * 299.99807 * 6 5 4 36 36 H 1.08997 * 109.47127 * 59.99551 * 6 5 4 37 37 H 1.08998 * 109.47222 * 300.00233 * 7 5 4 38 38 H 1.09001 * 109.46619 * 59.99986 * 7 5 4 39 39 H 1.08998 * 109.46963 * 180.02562 * 7 5 4 40 40 H 1.00906 * 110.99849 * 56.04530 * 8 5 4 41 41 H 1.08997 * 109.46951 * 60.00392 * 9 8 5 42 42 H 1.08998 * 109.47048 * 299.99579 * 9 8 5 43 43 H 1.07999 * 119.96200 * 359.97438 * 11 10 9 44 44 H 1.08002 * 120.04127 * 179.97438 * 12 11 10 45 45 H 1.08991 * 109.46955 * 270.00182 * 15 14 13 46 46 H 1.08995 * 109.47080 * 30.00542 * 15 14 13 47 47 H 1.09001 * 109.46349 * 150.00155 * 15 14 13 48 48 H 1.09000 * 109.46609 * 329.99879 * 16 14 13 49 49 H 1.09000 * 109.47175 * 209.99673 * 16 14 13 50 50 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 51 51 H 1.08002 * 120.03297 * 179.72644 * 25 13 12 52 52 H 1.08001 * 119.96366 * 180.25592 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7997 2.6581 1.1820 6 6 2.8100 3.8180 1.3082 7 6 4.5826 2.7956 -0.1253 8 7 4.7330 2.6847 2.3162 9 6 5.4868 3.9451 2.3483 10 6 6.4311 3.9358 3.5227 11 6 7.7135 3.4407 3.3729 12 6 8.5813 3.4303 4.4472 13 6 8.1647 3.9183 5.6792 14 7 9.0396 3.9088 6.7681 15 6 10.3981 3.3830 6.6115 16 6 8.5984 4.4234 8.0668 17 6 7.9878 3.3037 8.8697 18 1 7.9342 2.3082 8.4543 19 6 7.4976 3.5502 10.1346 20 7 7.5634 4.7623 10.6407 21 14 6.7415 2.1622 11.1301 22 1 7.7525 1.0948 11.3388 23 1 6.2930 2.6842 12.4460 24 1 5.5770 1.6044 10.3966 25 6 6.8742 4.4105 5.8275 26 6 6.0133 4.4230 4.7477 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4027 -0.9313 32 1 3.7400 0.5064 1.0920 33 1 2.4774 1.2353 2.1130 34 1 3.3547 4.7622 1.3080 35 1 2.1178 3.7982 0.4664 36 1 2.2522 3.7200 2.2395 37 1 5.2877 1.9693 -0.2152 38 1 3.8904 2.7758 -0.9671 39 1 5.1277 3.7395 -0.1248 40 1 5.3562 1.8915 2.2902 41 1 4.7936 4.7805 2.4465 42 1 6.0559 4.0517 1.4249 43 1 8.0366 3.0610 2.4149 44 1 9.5826 3.0430 4.3297 45 1 10.4022 2.3156 6.8319 46 1 10.7342 3.5439 5.5873 47 1 11.0685 3.8986 7.2992 48 1 7.8566 5.2073 7.9139 49 1 9.4535 4.8322 8.6052 50 1 7.2189 4.9356 11.5307 51 1 6.5458 4.7867 6.7852 52 1 5.0112 4.8093 4.8612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850417440.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:05 Heat of formation + Delta-G solvation = 40.107952 kcal Electronic energy + Delta-G solvation = -25970.409381 eV Core-core repulsion = 22548.780629 eV Total energy + Delta-G solvation = -3421.628752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.34582 -38.55887 -36.04312 -35.04827 -32.81842 -32.10182 -30.41151 -29.42591 -28.48288 -27.78926 -27.49865 -25.96202 -24.53221 -23.36992 -21.94792 -21.48323 -20.09020 -19.54441 -18.99271 -16.76308 -16.47951 -16.07843 -15.58412 -15.29931 -15.07464 -14.55373 -14.40521 -14.30755 -13.98166 -13.66939 -13.56601 -13.18862 -13.13666 -12.88362 -12.86377 -12.46552 -12.31835 -12.10413 -11.93478 -11.66398 -11.55480 -11.45830 -11.37438 -11.29565 -11.21985 -10.95283 -10.79037 -10.65492 -10.60254 -10.56117 -10.22278 -9.89621 -9.73082 -9.55539 -8.81804 -8.48205 -8.29507 -8.22364 -6.44330 -5.99713 -4.15148 2.01801 2.14286 2.25254 3.30227 3.34255 3.38154 4.10704 4.18788 4.43403 4.50015 4.65080 4.69241 4.83714 4.91720 5.10230 5.15058 5.23383 5.24436 5.29789 5.36632 5.46066 5.48526 5.50368 5.59293 5.64768 5.66972 5.71506 5.78675 5.82936 5.85132 5.95741 5.99517 6.03875 6.13974 6.15914 6.23241 6.30489 6.37773 6.41905 6.46512 6.51430 6.66657 6.95853 7.03195 7.16607 7.21531 7.29133 7.40033 7.50434 7.63635 7.83027 8.17596 8.28627 8.50507 8.93424 9.51511 10.97666 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.002582 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.550285 B =10841.456226 C =12125.481061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.097 4.097 4 C -0.101 4.101 5 C 0.109 3.891 6 C -0.142 4.142 7 C -0.185 4.185 8 N -0.673 5.673 9 C 0.111 3.889 10 C -0.171 4.171 11 C -0.069 4.069 12 C -0.222 4.222 13 C 0.241 3.759 14 N -0.616 5.616 15 C 0.101 3.899 16 C 0.249 3.751 17 C -0.530 4.530 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.188 4.188 26 C -0.051 4.051 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.340 0.660 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.040 0.960 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.036 0.964 49 H 0.030 0.970 50 H 0.264 0.736 51 H 0.131 0.869 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 -3.908 -21.988 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.134 4.134 4 C -0.139 4.139 5 C 0.017 3.983 6 C -0.200 4.200 7 C -0.244 4.244 8 N -0.304 5.304 9 C -0.016 4.016 10 C -0.174 4.174 11 C -0.088 4.088 12 C -0.245 4.245 13 C 0.134 3.866 14 N -0.322 5.322 15 C -0.043 4.043 16 C 0.130 3.870 17 C -0.569 4.569 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.210 4.210 26 C -0.071 4.071 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.159 0.841 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.121 0.879 44 H 0.130 0.870 45 H 0.059 0.941 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.149 0.851 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.295 -3.563 -21.149 22.654 hybrid contribution 0.284 -1.055 0.032 1.093 sum -7.011 -4.618 -21.118 22.725 Atomic orbital electron populations 1.23837 0.96016 1.01728 1.02015 1.23000 0.96038 0.98652 0.99154 1.20914 0.98294 0.95295 0.98922 1.21514 0.97661 0.96166 0.98568 1.20925 0.93029 0.95678 0.88618 1.21944 0.98616 0.97371 1.02040 1.22633 1.00796 1.01968 0.98957 1.60723 1.22193 1.04750 1.42735 1.20738 0.93941 0.92389 0.94582 1.19209 0.94684 1.08229 0.95292 1.20494 0.93187 0.98051 0.97117 1.20509 1.00471 1.10794 0.92732 1.17948 0.90015 0.91648 0.87002 1.47088 1.10729 1.64749 1.09623 1.21450 0.84150 0.98454 1.00295 1.19295 0.95627 0.94498 0.77621 1.21535 1.39383 0.96024 0.99978 0.92347 1.24959 0.95831 0.95764 0.97523 1.69919 1.46494 1.19850 1.17228 0.86580 0.79769 0.82147 0.79118 1.20274 1.21200 1.20034 1.20901 0.93076 1.07017 1.00018 1.20639 0.97988 0.96798 0.91644 0.88715 0.88665 0.87579 0.91129 0.90926 0.92052 0.90858 0.92546 0.92451 0.91732 0.92796 0.92081 0.92274 0.84127 0.90821 0.95158 0.87855 0.87028 0.94140 0.92872 0.92088 0.94640 0.95248 0.92612 0.85113 0.87097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.47 14.32 29.02 0.42 -1.05 16 2 C -0.15 -1.16 9.52 -36.02 -0.34 -1.50 16 3 C -0.10 -0.73 4.95 -27.88 -0.14 -0.87 16 4 C -0.10 -0.89 4.51 -26.73 -0.12 -1.01 16 5 C 0.11 1.02 0.74 -131.60 -0.10 0.92 16 6 C -0.14 -1.31 7.89 37.16 0.29 -1.02 16 7 C -0.18 -1.54 7.88 37.16 0.29 -1.25 16 8 N -0.67 -7.89 6.08 -101.22 -0.62 -8.50 16 9 C 0.11 1.38 5.02 -4.98 -0.02 1.36 16 10 C -0.17 -2.65 5.40 -104.58 -0.56 -3.21 16 11 C -0.07 -1.07 9.69 -39.61 -0.38 -1.45 16 12 C -0.22 -3.88 9.21 -39.38 -0.36 -4.24 16 13 C 0.24 4.93 6.55 -83.78 -0.55 4.38 16 14 N -0.62 -13.32 2.99 -180.99 -0.54 -13.86 16 15 C 0.10 1.78 10.23 59.85 0.61 2.40 16 16 C 0.25 6.31 4.95 -5.19 -0.03 6.28 16 17 C -0.53 -14.64 9.39 -34.44 -0.32 -14.97 16 18 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.19 -3.85 9.20 -39.38 -0.36 -4.22 16 26 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 27 H 0.09 0.61 8.06 -52.49 -0.42 0.19 16 28 H 0.10 0.65 7.84 -52.48 -0.41 0.24 16 29 H 0.11 0.76 8.06 -52.48 -0.42 0.34 16 30 H 0.07 0.52 6.08 -51.93 -0.32 0.21 16 31 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.53 6.41 -51.93 -0.33 0.20 16 35 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 39 H 0.06 0.52 6.40 -51.93 -0.33 0.19 16 40 H 0.34 4.01 8.71 -39.29 -0.34 3.67 16 41 H 0.07 0.91 6.25 -51.93 -0.32 0.58 16 42 H 0.03 0.35 6.24 -51.93 -0.32 0.02 16 43 H 0.10 1.34 8.06 -52.49 -0.42 0.91 16 44 H 0.11 1.76 6.14 -52.49 -0.32 1.44 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.80 6.20 -51.93 -0.32 0.48 16 47 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 48 H 0.04 0.95 6.21 -51.93 -0.32 0.63 16 49 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 50 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 51 H 0.13 2.97 6.15 -52.49 -0.32 2.65 16 52 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 404.57 15.07 6.10 6.10 Total: -1.00 -28.74 404.57 -10.35 -39.09 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -8.84 Total: 4.87 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -2.16 Total: -19.13 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.42 Total: -47.48 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.74 -10.35 -39.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850417440.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.200 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds