Wall clock time and date at job start Tue Mar 31 2020 11:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00345 * 2 1 4 4 C 1.53001 * 109.46766 * 125.00114 * 3 2 1 5 5 C 1.52999 * 109.46889 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47308 * 60.00327 * 5 4 3 7 7 C 1.53007 * 109.47194 * 300.00053 * 5 4 3 8 8 N 1.46901 * 109.47323 * 180.02562 * 5 4 3 9 9 C 1.46897 * 111.00182 * 179.97438 * 8 5 4 10 10 C 1.50703 * 109.46910 * 179.97438 * 9 8 5 11 11 C 1.38286 * 119.92478 * 90.00241 * 10 9 8 12 12 C 1.38101 * 120.07469 * 180.02562 * 11 10 9 13 13 C 1.38911 * 119.92611 * 359.97438 * 12 11 10 14 14 N 1.39677 * 120.07774 * 179.97438 * 13 12 11 15 15 C 1.46508 * 119.99671 * 359.97438 * 14 13 12 16 16 C 1.46500 * 120.00191 * 180.02562 * 14 13 12 17 17 C 1.50706 * 109.46949 * 89.99699 * 16 14 13 18 18 H 1.07999 * 120.00196 * 0.02562 * 17 16 14 19 19 C 1.37879 * 119.99394 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00338 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99426 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47776 * 59.99746 * 21 19 17 23 23 H 1.48503 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47028 * 299.99350 * 21 19 17 25 25 C 1.38915 * 119.84858 * 0.25685 * 13 12 11 26 26 C 1.38101 * 119.92539 * 359.48545 * 25 13 12 27 27 H 1.07994 * 120.00528 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00124 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00124 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46982 * 5.00623 * 3 2 1 31 31 H 1.08997 * 109.47760 * 245.00305 * 3 2 1 32 32 H 1.09005 * 109.47309 * 60.00622 * 4 3 2 33 33 H 1.08996 * 109.47642 * 300.00717 * 4 3 2 34 34 H 1.09007 * 109.47385 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47158 * 299.99807 * 6 5 4 36 36 H 1.08997 * 109.47127 * 59.99551 * 6 5 4 37 37 H 1.08998 * 109.47222 * 300.00233 * 7 5 4 38 38 H 1.09001 * 109.46619 * 59.99986 * 7 5 4 39 39 H 1.08998 * 109.46963 * 180.02562 * 7 5 4 40 40 H 1.00906 * 110.99849 * 56.04530 * 8 5 4 41 41 H 1.08997 * 109.46951 * 60.00392 * 9 8 5 42 42 H 1.08998 * 109.47048 * 299.99579 * 9 8 5 43 43 H 1.07999 * 119.96200 * 359.97438 * 11 10 9 44 44 H 1.08002 * 120.04127 * 179.97438 * 12 11 10 45 45 H 1.08991 * 109.46955 * 270.00182 * 15 14 13 46 46 H 1.08995 * 109.47080 * 30.00542 * 15 14 13 47 47 H 1.09001 * 109.46349 * 150.00155 * 15 14 13 48 48 H 1.09000 * 109.46609 * 329.99879 * 16 14 13 49 49 H 1.09000 * 109.47175 * 209.99673 * 16 14 13 50 50 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 51 51 H 1.08002 * 120.03297 * 179.72644 * 25 13 12 52 52 H 1.08001 * 119.96366 * 180.25592 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7997 2.6581 1.1820 6 6 2.8100 3.8180 1.3082 7 6 4.5826 2.7956 -0.1253 8 7 4.7330 2.6847 2.3162 9 6 5.4868 3.9451 2.3483 10 6 6.4311 3.9358 3.5227 11 6 7.7135 3.4407 3.3729 12 6 8.5813 3.4303 4.4472 13 6 8.1647 3.9183 5.6792 14 7 9.0396 3.9088 6.7681 15 6 10.3981 3.3830 6.6115 16 6 8.5984 4.4234 8.0668 17 6 7.9878 3.3037 8.8697 18 1 7.9342 2.3082 8.4543 19 6 7.4976 3.5502 10.1346 20 7 7.5634 4.7623 10.6407 21 14 6.7415 2.1622 11.1301 22 1 7.7525 1.0948 11.3388 23 1 6.2930 2.6842 12.4460 24 1 5.5770 1.6044 10.3966 25 6 6.8742 4.4105 5.8275 26 6 6.0133 4.4230 4.7477 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4027 -0.9313 32 1 3.7400 0.5064 1.0920 33 1 2.4774 1.2353 2.1130 34 1 3.3547 4.7622 1.3080 35 1 2.1178 3.7982 0.4664 36 1 2.2522 3.7200 2.2395 37 1 5.2877 1.9693 -0.2152 38 1 3.8904 2.7758 -0.9671 39 1 5.1277 3.7395 -0.1248 40 1 5.3562 1.8915 2.2902 41 1 4.7936 4.7805 2.4465 42 1 6.0559 4.0517 1.4249 43 1 8.0366 3.0610 2.4149 44 1 9.5826 3.0430 4.3297 45 1 10.4022 2.3156 6.8319 46 1 10.7342 3.5439 5.5873 47 1 11.0685 3.8986 7.2992 48 1 7.8566 5.2073 7.9139 49 1 9.4535 4.8322 8.6052 50 1 7.2189 4.9356 11.5307 51 1 6.5458 4.7867 6.7852 52 1 5.0112 4.8093 4.8612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850417440.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:04 Heat of formation + Delta-G solvation = 26.067151 kcal Electronic energy + Delta-G solvation = -25971.018236 eV Core-core repulsion = 22548.780629 eV Total energy + Delta-G solvation = -3422.237607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55683 -39.58240 -37.41224 -35.91104 -34.77855 -33.16723 -31.87423 -30.57520 -29.60415 -29.26381 -28.18674 -27.22783 -25.96731 -24.59478 -23.27780 -22.96890 -20.99219 -20.66885 -19.74483 -18.64670 -18.15255 -17.02323 -16.90709 -16.41569 -16.10390 -15.89734 -15.58685 -15.34757 -15.23562 -14.99413 -14.63367 -14.44569 -14.30129 -14.01185 -13.91444 -13.77182 -13.41708 -13.17307 -13.15120 -13.04902 -12.99976 -12.68621 -12.53181 -12.47264 -12.35842 -12.21257 -12.11282 -11.97647 -11.76608 -11.73326 -11.44760 -11.38176 -11.29201 -10.64046 -10.40043 -10.12287 -9.65220 -9.16356 -8.35878 -7.79323 -6.37275 0.72611 0.85645 1.36356 1.38803 1.45158 1.46809 2.34217 2.64039 3.03127 3.06063 3.50097 3.83294 4.00001 4.07754 4.16167 4.21791 4.24504 4.27694 4.42940 4.45793 4.48420 4.57196 4.61234 4.66950 4.71242 4.73506 4.82634 4.85318 4.87242 4.93485 4.94689 5.01433 5.07557 5.08288 5.13267 5.16372 5.19614 5.23550 5.31019 5.34707 5.45149 5.52898 5.60206 5.68371 5.70455 5.81023 5.94378 5.96235 6.07434 6.20767 6.32891 6.50521 6.61009 6.82791 6.94668 7.34338 8.83015 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.002582 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.550285 B =10841.456226 C =12125.481061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.091 4.091 4 C -0.096 4.096 5 C 0.110 3.890 6 C -0.142 4.142 7 C -0.180 4.180 8 N -0.687 5.687 9 C 0.118 3.882 10 C -0.157 4.157 11 C -0.062 4.062 12 C -0.216 4.216 13 C 0.211 3.789 14 N -0.632 5.632 15 C 0.100 3.900 16 C 0.266 3.734 17 C -0.541 4.541 18 H 0.047 0.953 19 C 0.012 3.988 20 N -0.926 5.926 21 Si 0.961 3.039 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.274 1.274 25 C -0.216 4.216 26 C -0.057 4.057 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.341 0.659 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.142 0.858 44 H 0.133 0.867 45 H 0.038 0.962 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.010 0.990 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.093 0.907 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.177 -5.379 -24.859 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.179 4.179 3 C -0.128 4.128 4 C -0.134 4.134 5 C 0.020 3.980 6 C -0.200 4.200 7 C -0.239 4.239 8 N -0.318 5.318 9 C -0.010 4.010 10 C -0.159 4.159 11 C -0.081 4.081 12 C -0.239 4.239 13 C 0.106 3.894 14 N -0.340 5.340 15 C -0.043 4.043 16 C 0.145 3.855 17 C -0.580 4.580 18 H 0.065 0.935 19 C -0.187 4.187 20 N -0.566 5.566 21 Si 0.785 3.215 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.200 1.200 25 C -0.239 4.239 26 C -0.077 4.077 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.159 0.841 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.160 0.840 44 H 0.151 0.849 45 H 0.057 0.943 46 H 0.103 0.897 47 H 0.080 0.920 48 H 0.028 0.972 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.111 0.889 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.535 -5.042 -24.062 25.713 hybrid contribution 0.277 -0.587 0.790 1.023 sum -7.258 -5.629 -23.271 25.018 Atomic orbital electron populations 1.23993 0.96114 1.02321 1.01514 1.23106 0.96291 0.98934 0.99612 1.20866 0.98033 0.95296 0.98639 1.21447 0.97684 0.95961 0.98308 1.20956 0.92657 0.95881 0.88521 1.21953 0.98790 0.97246 1.01980 1.22570 1.00904 1.01955 0.98423 1.60666 1.22364 1.04318 1.44480 1.20670 0.93617 0.92928 0.93738 1.19572 0.95441 1.05734 0.95200 1.20911 0.92503 0.96614 0.98031 1.20781 1.01775 1.09595 0.91705 1.18225 0.89914 0.93321 0.87923 1.46947 1.12395 1.66071 1.08598 1.21588 0.82352 0.98068 1.02289 1.18786 0.93942 0.93369 0.79436 1.21734 1.39682 0.95985 1.00581 0.93469 1.25779 0.96191 0.98146 0.98601 1.70025 1.47279 1.21636 1.17668 0.85571 0.78906 0.79280 0.77717 1.19322 1.20267 1.19967 1.20776 0.94460 1.09166 0.99528 1.20774 0.97905 0.97079 0.91910 0.88030 0.88316 0.87265 0.90989 0.89905 0.91931 0.92746 0.92705 0.90791 0.93289 0.92471 0.90799 0.92435 0.84057 0.90774 0.93174 0.83996 0.84919 0.94319 0.89693 0.92043 0.97206 0.97169 0.92376 0.88929 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.67 14.32 67.79 0.97 -1.70 16 2 C -0.16 -2.21 9.52 25.65 0.24 -1.96 16 3 C -0.09 -1.17 4.95 29.85 0.15 -1.02 16 4 C -0.10 -1.52 4.51 30.59 0.14 -1.38 16 5 C 0.11 1.81 0.74 3.53 0.00 1.81 16 6 C -0.14 -2.35 7.89 71.98 0.57 -1.78 16 7 C -0.18 -2.38 7.88 71.98 0.57 -1.81 16 8 N -0.69 -14.56 6.08 -474.15 -2.88 -17.45 16 9 C 0.12 2.61 5.02 85.56 0.43 3.04 16 10 C -0.16 -4.54 5.40 -19.84 -0.11 -4.64 16 11 C -0.06 -1.71 9.69 22.25 0.22 -1.49 16 12 C -0.22 -7.12 9.21 22.40 0.21 -6.91 16 13 C 0.21 8.76 6.55 38.21 0.25 9.01 16 14 N -0.63 -28.18 2.99 -726.54 -2.17 -30.35 16 15 C 0.10 3.52 10.23 127.77 1.31 4.83 16 16 C 0.27 14.28 4.95 85.63 0.42 14.70 16 17 C -0.54 -31.09 9.39 25.60 0.24 -30.85 16 18 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 19 C 0.01 0.69 5.46 84.66 0.46 1.15 16 20 N -0.93 -55.22 13.29 21.45 0.28 -54.94 16 21 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 25 C -0.22 -9.34 9.20 22.40 0.21 -9.14 16 26 C -0.06 -2.04 9.69 22.25 0.22 -1.82 16 27 H 0.10 1.16 8.06 -2.91 -0.02 1.14 16 28 H 0.10 1.20 7.84 -2.91 -0.02 1.18 16 29 H 0.11 1.40 8.06 -2.91 -0.02 1.37 16 30 H 0.07 0.90 6.08 -2.39 -0.01 0.89 16 31 H 0.08 0.91 6.43 -2.39 -0.02 0.89 16 32 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 0.92 6.41 -2.38 -0.02 0.90 16 35 H 0.07 0.96 6.43 -2.39 -0.02 0.95 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.80 6.43 -2.39 -0.02 0.79 16 39 H 0.06 0.80 6.40 -2.39 -0.02 0.78 16 40 H 0.34 7.12 8.71 -89.69 -0.78 6.34 16 41 H 0.07 1.66 6.25 -2.39 -0.01 1.65 16 42 H 0.05 0.94 6.24 -2.39 -0.01 0.93 16 43 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 44 H 0.13 3.76 6.14 -2.91 -0.02 3.74 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.08 2.39 6.20 -2.39 -0.01 2.38 16 47 H 0.06 2.11 7.89 -2.39 -0.02 2.09 16 48 H 0.01 0.58 6.21 -2.39 -0.01 0.56 16 49 H 0.01 0.58 7.89 -2.39 -0.02 0.56 16 50 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 51 H 0.09 4.63 6.15 -2.91 -0.02 4.61 16 52 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -64.32 404.57 3.85 -60.47 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.11 Total: 25.22 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 6.49 Total: -29.97 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -4.77 Total: -102.74 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.32 3.85 -60.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850417440.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.539 kcal (2) G-P(sol) polarization free energy of solvation -64.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds