Wall clock time and date at job start Tue Mar 31 2020 11:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46882 * 2 1 4 4 C 1.52995 * 109.47286 * 239.99552 * 2 1 3 5 5 C 1.50699 * 109.46918 * 65.00415 * 4 2 1 6 6 H 1.07993 * 120.00264 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99734 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00328 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99707 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47154 * 90.00038 * 9 7 5 11 11 H 1.48509 * 109.47076 * 209.99806 * 9 7 5 12 12 H 1.48496 * 109.47331 * 329.99538 * 9 7 5 13 13 C 1.53000 * 109.47001 * 119.99431 * 2 1 3 14 14 N 1.46898 * 109.47514 * 295.00538 * 13 2 1 15 15 C 1.46900 * 111.00613 * 169.99652 * 14 13 2 16 16 C 1.50704 * 109.47212 * 284.90455 * 15 14 13 17 17 C 1.38281 * 119.92081 * 275.54199 * 16 15 14 18 18 C 1.38110 * 120.07200 * 179.72654 * 17 16 15 19 19 C 1.38912 * 119.92202 * 0.53981 * 18 17 16 20 20 N 1.39674 * 120.07443 * 179.70396 * 19 18 17 21 21 C 1.46506 * 119.99885 * 180.02562 * 20 19 18 22 22 C 1.46496 * 119.99989 * 0.02562 * 20 19 18 23 23 C 1.38910 * 119.85215 * 359.73330 * 19 18 17 24 24 C 1.38105 * 119.92636 * 359.97438 * 23 19 18 25 25 C 1.46900 * 110.99989 * 293.95200 * 14 13 2 26 26 C 1.52998 * 117.50162 * 247.37329 * 25 14 13 27 27 C 1.53001 * 117.50123 * 178.70855 * 25 14 13 28 28 H 1.09003 * 109.47780 * 300.00237 * 1 2 3 29 29 H 1.09005 * 109.47203 * 60.00049 * 1 2 3 30 30 H 1.09004 * 109.47383 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46829 * 185.00048 * 4 2 1 32 32 H 1.08997 * 109.47444 * 305.00314 * 4 2 1 33 33 H 0.97001 * 120.00545 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47341 * 175.00111 * 13 2 1 35 35 H 1.09002 * 109.47168 * 55.00126 * 13 2 1 36 36 H 1.09005 * 109.46554 * 44.89790 * 15 14 13 37 37 H 1.08994 * 109.47119 * 164.89780 * 15 14 13 38 38 H 1.08003 * 119.96812 * 359.97289 * 17 16 15 39 39 H 1.07991 * 120.04112 * 180.27283 * 18 17 16 40 40 H 1.08995 * 109.47202 * 60.00488 * 21 20 19 41 41 H 1.09001 * 109.46961 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.47167 * 299.99908 * 21 20 19 43 43 H 1.09006 * 109.46823 * 89.99715 * 22 20 19 44 44 H 1.08996 * 109.47211 * 209.99591 * 22 20 19 45 45 H 1.08994 * 109.47522 * 330.00149 * 22 20 19 46 46 H 1.08003 * 120.04234 * 179.97438 * 23 19 18 47 47 H 1.08002 * 119.96473 * 179.97438 * 24 23 19 48 48 H 1.09004 * 115.54609 * 33.03833 * 25 14 13 49 49 H 1.09006 * 117.49759 * 359.97438 * 26 25 14 50 50 H 1.08998 * 117.50322 * 145.01506 * 26 25 14 51 51 H 1.09002 * 117.49464 * 214.97897 * 27 25 14 52 52 H 1.09000 * 117.49821 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0570 -2.4765 6 1 1.0801 0.9740 -2.3757 7 6 1.9934 -0.4019 -3.7282 8 7 2.6774 -1.5184 -3.8509 9 14 1.4987 0.5625 -5.2496 10 1 2.5634 1.5428 -5.5822 11 1 1.3125 -0.3717 -6.3890 12 1 0.2269 1.2828 -4.9873 13 6 2.0399 -0.7211 1.2493 14 7 1.6512 0.0375 2.4457 15 6 1.9122 -0.7355 3.6673 16 6 0.8680 -1.8123 3.8130 17 6 -0.3475 -1.5190 4.4036 18 6 -1.3089 -2.5020 4.5336 19 6 -1.0494 -3.7893 4.0806 20 7 -2.0170 -4.7874 4.2161 21 6 -1.7413 -6.1446 3.7383 22 6 -3.3075 -4.4771 4.8362 23 6 0.1749 -4.0818 3.4930 24 6 1.1295 -3.0926 3.3606 25 6 2.3339 1.3375 2.4895 26 6 3.3675 1.5558 3.5963 27 6 2.0125 2.2651 3.6631 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1263 -0.7995 -1.2054 32 1 1.6054 -1.7198 -1.2951 33 1 2.9247 -1.8414 -4.7315 34 1 3.1262 -0.7994 1.2057 35 1 1.6053 -1.7197 1.2953 36 1 2.8995 -1.1931 3.6036 37 1 1.8739 -0.0728 4.5317 38 1 -0.5469 -0.5191 4.7599 39 1 -2.2596 -2.2713 4.9909 40 1 -0.8743 -6.5455 4.2631 41 1 -2.6069 -6.7794 3.9280 42 1 -1.5381 -6.1186 2.6677 43 1 -4.0108 -4.1536 4.0688 44 1 -3.6952 -5.3666 5.3327 45 1 -3.1767 -3.6802 5.5682 46 1 0.3800 -5.0817 3.1400 47 1 2.0817 -3.3195 2.9042 48 1 2.5280 1.7994 1.5214 49 1 3.5406 0.7349 4.2922 50 1 4.2413 2.1616 3.3566 51 1 1.9957 3.3372 3.4672 52 1 1.2942 1.9108 4.4025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876570711.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:35 Heat of formation + Delta-G solvation = 58.616905 kcal Electronic energy + Delta-G solvation = -26875.209188 eV Core-core repulsion = 23454.383045 eV Total energy + Delta-G solvation = -3420.826144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.83229 -38.72323 -36.32426 -35.39377 -33.18010 -31.94001 -31.05235 -30.03426 -28.27569 -27.04122 -26.33614 -24.96660 -23.55503 -22.73840 -22.19077 -22.14092 -20.73462 -19.79155 -18.43638 -17.35250 -16.60238 -16.07772 -15.82316 -15.40976 -15.16370 -14.89881 -14.45449 -14.27085 -13.93214 -13.67699 -13.44341 -13.34262 -12.87917 -12.81073 -12.73069 -12.35692 -12.24165 -12.09625 -12.03471 -11.80991 -11.50767 -11.34611 -11.32012 -11.09699 -10.82664 -10.73023 -10.65855 -10.42698 -10.21523 -10.16437 -10.06067 -9.67089 -9.49514 -9.04262 -8.87723 -8.73891 -8.27204 -7.76743 -7.21657 -5.92340 -3.92854 1.60775 1.69488 3.04893 3.36180 3.42365 3.46200 3.81168 4.05849 4.39464 4.53024 4.78626 4.84379 5.00810 5.04217 5.07574 5.10222 5.13948 5.18300 5.24984 5.37910 5.40851 5.43554 5.48213 5.53026 5.58015 5.64158 5.73493 5.78867 5.83625 5.88427 6.01850 6.06805 6.12088 6.16489 6.22406 6.28965 6.37767 6.52861 6.54266 6.67264 6.82283 6.90383 6.95986 7.12763 7.19979 7.26841 7.31329 7.45235 7.50713 7.56240 7.76761 7.93742 8.08771 8.53410 9.13653 9.70110 11.19247 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010070 B = 0.003583 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.975046 B = 7812.079326 C = 9742.279357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.079 4.079 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.061 3.939 14 N -0.496 5.496 15 C 0.095 3.905 16 C -0.125 4.125 17 C -0.050 4.050 18 C -0.198 4.198 19 C 0.208 3.792 20 N -0.642 5.642 21 C 0.098 3.902 22 C 0.095 3.905 23 C -0.192 4.192 24 C -0.063 4.063 25 C 0.032 3.968 26 C -0.227 4.227 27 C -0.176 4.176 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.011 0.989 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.125 0.875 49 H 0.095 0.905 50 H 0.090 0.910 51 H 0.093 0.907 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 -3.981 21.344 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.217 5.217 15 C -0.032 4.032 16 C -0.127 4.127 17 C -0.070 4.070 18 C -0.220 4.220 19 C 0.108 3.892 20 N -0.355 5.355 21 C -0.046 4.046 22 C -0.048 4.048 23 C -0.214 4.214 24 C -0.082 4.082 25 C -0.077 4.077 26 C -0.266 4.266 27 C -0.214 4.214 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.143 0.857 49 H 0.113 0.887 50 H 0.108 0.892 51 H 0.112 0.888 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.130 -4.178 21.189 22.744 hybrid contribution 0.599 0.233 -0.975 1.168 sum -6.531 -3.946 20.215 21.607 Atomic orbital electron populations 1.21547 0.95782 1.00388 1.00003 1.21206 0.95948 0.98852 0.93723 0.92754 1.19116 0.95796 0.95559 0.90501 1.21245 1.34348 1.08222 0.91002 0.92611 1.25009 0.95418 0.95080 0.99020 1.69965 1.39246 1.21266 1.23264 0.86657 0.78930 0.79830 0.82968 1.20806 1.21349 1.19891 1.22353 0.97425 0.97526 0.89222 1.61909 1.55628 1.02098 1.02090 1.21041 0.94988 0.93642 0.93578 1.19467 0.96268 0.94033 1.02924 1.20658 0.92094 0.97895 0.96317 1.20599 1.00853 0.92129 1.08459 1.17782 0.88591 0.88295 0.94554 1.46263 1.14557 1.08384 1.66342 1.21565 1.01168 0.82493 0.99345 1.21613 0.84515 1.01290 0.97367 1.20565 0.93622 1.00112 1.07133 1.20820 0.98516 0.92321 0.96577 1.22770 0.97665 0.92695 0.94618 1.23574 0.93738 1.04227 1.05094 1.23029 0.98155 0.98165 1.02065 0.93890 0.93034 0.94389 0.97035 0.96659 0.93184 0.95307 0.90823 0.94212 0.90472 0.86432 0.86451 0.93001 0.91199 0.92694 0.93561 0.91896 0.91434 0.86430 0.86410 0.85721 0.88718 0.89165 0.88849 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.89 37.16 0.33 -2.14 16 2 C -0.08 -1.66 2.29 -90.62 -0.21 -1.87 16 3 H 0.05 1.16 6.26 -51.93 -0.33 0.83 16 4 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 5 C -0.51 -14.52 8.41 -34.44 -0.29 -14.81 16 6 H 0.06 1.56 7.05 -52.49 -0.37 1.18 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.06 1.11 4.17 -3.83 -0.02 1.09 16 14 N -0.50 -7.59 4.10 -228.08 -0.94 -8.53 16 15 C 0.09 1.26 3.76 -4.97 -0.02 1.24 16 16 C -0.12 -1.70 5.01 -104.59 -0.52 -2.22 16 17 C -0.05 -0.65 9.71 -39.61 -0.38 -1.03 16 18 C -0.20 -2.45 9.21 -39.38 -0.36 -2.81 16 19 C 0.21 2.65 6.55 -83.79 -0.55 2.10 16 20 N -0.64 -6.78 3.41 -187.55 -0.64 -7.42 16 21 C 0.10 0.82 9.40 59.85 0.56 1.39 16 22 C 0.10 0.76 10.16 59.84 0.61 1.36 16 23 C -0.19 -2.53 9.31 -39.38 -0.37 -2.89 16 24 C -0.06 -0.87 8.37 -39.61 -0.33 -1.20 16 25 C 0.03 0.46 5.82 -67.71 -0.39 0.06 16 26 C -0.23 -2.71 9.57 -26.69 -0.26 -2.97 16 27 C -0.18 -2.08 9.91 -26.69 -0.26 -2.34 16 28 H 0.04 0.81 7.75 -51.93 -0.40 0.41 16 29 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 35 H 0.07 1.37 6.31 -51.93 -0.33 1.05 16 36 H 0.04 0.53 7.72 -51.93 -0.40 0.13 16 37 H 0.08 0.92 5.56 -51.93 -0.29 0.64 16 38 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.12 1.23 6.14 -52.49 -0.32 0.90 16 40 H 0.05 0.41 7.95 -51.93 -0.41 0.00 16 41 H 0.07 0.44 7.79 -51.93 -0.40 0.03 16 42 H 0.05 0.50 7.95 -51.93 -0.41 0.08 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 45 H 0.07 0.50 6.20 -51.93 -0.32 0.18 16 46 H 0.12 1.39 6.74 -52.48 -0.35 1.03 16 47 H 0.12 1.55 8.01 -52.49 -0.42 1.13 16 48 H 0.13 1.96 6.29 -51.93 -0.33 1.63 16 49 H 0.09 1.08 6.04 -51.93 -0.31 0.77 16 50 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 52 H 0.09 1.05 7.43 -51.93 -0.39 0.66 16 LS Contribution 401.49 15.07 6.05 6.05 Total: -1.00 -31.35 401.49 -11.57 -42.92 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -9.08 Total: 1.51 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -2.68 Total: -24.94 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.84 Total: -42.55 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.35 -11.57 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876570711.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.533 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds