Wall clock time and date at job start Tue Mar 31 2020 11:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46882 * 2 1 4 4 C 1.52995 * 109.47286 * 239.99552 * 2 1 3 5 5 C 1.50699 * 109.46918 * 65.00415 * 4 2 1 6 6 H 1.07993 * 120.00264 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99734 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00328 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99707 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47154 * 90.00038 * 9 7 5 11 11 H 1.48509 * 109.47076 * 209.99806 * 9 7 5 12 12 H 1.48496 * 109.47331 * 329.99538 * 9 7 5 13 13 C 1.53000 * 109.47001 * 119.99431 * 2 1 3 14 14 N 1.46898 * 109.47514 * 295.00538 * 13 2 1 15 15 C 1.46900 * 111.00613 * 169.99652 * 14 13 2 16 16 C 1.50704 * 109.47212 * 284.90455 * 15 14 13 17 17 C 1.38281 * 119.92081 * 275.54199 * 16 15 14 18 18 C 1.38110 * 120.07200 * 179.72654 * 17 16 15 19 19 C 1.38912 * 119.92202 * 0.53981 * 18 17 16 20 20 N 1.39674 * 120.07443 * 179.70396 * 19 18 17 21 21 C 1.46506 * 119.99885 * 180.02562 * 20 19 18 22 22 C 1.46496 * 119.99989 * 0.02562 * 20 19 18 23 23 C 1.38910 * 119.85215 * 359.73330 * 19 18 17 24 24 C 1.38105 * 119.92636 * 359.97438 * 23 19 18 25 25 C 1.46900 * 110.99989 * 293.95200 * 14 13 2 26 26 C 1.52998 * 117.50162 * 247.37329 * 25 14 13 27 27 C 1.53001 * 117.50123 * 178.70855 * 25 14 13 28 28 H 1.09003 * 109.47780 * 300.00237 * 1 2 3 29 29 H 1.09005 * 109.47203 * 60.00049 * 1 2 3 30 30 H 1.09004 * 109.47383 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46829 * 185.00048 * 4 2 1 32 32 H 1.08997 * 109.47444 * 305.00314 * 4 2 1 33 33 H 0.97001 * 120.00545 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47341 * 175.00111 * 13 2 1 35 35 H 1.09002 * 109.47168 * 55.00126 * 13 2 1 36 36 H 1.09005 * 109.46554 * 44.89790 * 15 14 13 37 37 H 1.08994 * 109.47119 * 164.89780 * 15 14 13 38 38 H 1.08003 * 119.96812 * 359.97289 * 17 16 15 39 39 H 1.07991 * 120.04112 * 180.27283 * 18 17 16 40 40 H 1.08995 * 109.47202 * 60.00488 * 21 20 19 41 41 H 1.09001 * 109.46961 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.47167 * 299.99908 * 21 20 19 43 43 H 1.09006 * 109.46823 * 89.99715 * 22 20 19 44 44 H 1.08996 * 109.47211 * 209.99591 * 22 20 19 45 45 H 1.08994 * 109.47522 * 330.00149 * 22 20 19 46 46 H 1.08003 * 120.04234 * 179.97438 * 23 19 18 47 47 H 1.08002 * 119.96473 * 179.97438 * 24 23 19 48 48 H 1.09004 * 115.54609 * 33.03833 * 25 14 13 49 49 H 1.09006 * 117.49759 * 359.97438 * 26 25 14 50 50 H 1.08998 * 117.50322 * 145.01506 * 26 25 14 51 51 H 1.09002 * 117.49464 * 214.97897 * 27 25 14 52 52 H 1.09000 * 117.49821 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0570 -2.4765 6 1 1.0801 0.9740 -2.3757 7 6 1.9934 -0.4019 -3.7282 8 7 2.6774 -1.5184 -3.8509 9 14 1.4987 0.5625 -5.2496 10 1 2.5634 1.5428 -5.5822 11 1 1.3125 -0.3717 -6.3890 12 1 0.2269 1.2828 -4.9873 13 6 2.0399 -0.7211 1.2493 14 7 1.6512 0.0375 2.4457 15 6 1.9122 -0.7355 3.6673 16 6 0.8680 -1.8123 3.8130 17 6 -0.3475 -1.5190 4.4036 18 6 -1.3089 -2.5020 4.5336 19 6 -1.0494 -3.7893 4.0806 20 7 -2.0170 -4.7874 4.2161 21 6 -1.7413 -6.1446 3.7383 22 6 -3.3075 -4.4771 4.8362 23 6 0.1749 -4.0818 3.4930 24 6 1.1295 -3.0926 3.3606 25 6 2.3339 1.3375 2.4895 26 6 3.3675 1.5558 3.5963 27 6 2.0125 2.2651 3.6631 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1263 -0.7995 -1.2054 32 1 1.6054 -1.7198 -1.2951 33 1 2.9247 -1.8414 -4.7315 34 1 3.1262 -0.7994 1.2057 35 1 1.6053 -1.7197 1.2953 36 1 2.8995 -1.1931 3.6036 37 1 1.8739 -0.0728 4.5317 38 1 -0.5469 -0.5191 4.7599 39 1 -2.2596 -2.2713 4.9909 40 1 -0.8743 -6.5455 4.2631 41 1 -2.6069 -6.7794 3.9280 42 1 -1.5381 -6.1186 2.6677 43 1 -4.0108 -4.1536 4.0688 44 1 -3.6952 -5.3666 5.3327 45 1 -3.1767 -3.6802 5.5682 46 1 0.3800 -5.0817 3.1400 47 1 2.0817 -3.3195 2.9042 48 1 2.5280 1.7994 1.5214 49 1 3.5406 0.7349 4.2922 50 1 4.2413 2.1616 3.3566 51 1 1.9957 3.3372 3.4672 52 1 1.2942 1.9108 4.4025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876570711.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:34 Heat of formation + Delta-G solvation = 43.168357 kcal Electronic energy + Delta-G solvation = -26875.879088 eV Core-core repulsion = 23454.383045 eV Total energy + Delta-G solvation = -3421.496043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84456 -39.79207 -37.19224 -37.05348 -34.78463 -33.63172 -31.98992 -31.19247 -28.97093 -28.89749 -27.67550 -26.36928 -24.77166 -24.28886 -23.18183 -23.10356 -21.87901 -21.04322 -19.90254 -18.55601 -18.19691 -17.41351 -16.81248 -16.70584 -16.33127 -15.99196 -15.86394 -15.52361 -15.00559 -14.88661 -14.62638 -14.51170 -14.33070 -14.11953 -13.73096 -13.48962 -13.43891 -13.26116 -13.01002 -12.96442 -12.86085 -12.76135 -12.74214 -12.56853 -12.35975 -12.20057 -12.13076 -11.86909 -11.70485 -11.57929 -11.24090 -11.18934 -11.03793 -10.86831 -10.52744 -10.52171 -9.73557 -8.95659 -8.16602 -8.09725 -6.25535 0.61718 0.70596 1.39644 1.40952 1.52076 2.30390 2.42319 2.73676 3.06168 3.16720 3.30847 3.90347 3.95829 4.03768 4.09084 4.15236 4.20852 4.22758 4.24439 4.31909 4.46132 4.49128 4.52524 4.57792 4.59898 4.68043 4.75867 4.80632 4.82690 4.86615 4.89086 4.92592 4.96293 4.97798 5.02296 5.10203 5.15533 5.22315 5.29542 5.31677 5.43769 5.48484 5.49892 5.55056 5.58530 5.82148 5.88388 5.90350 6.01891 6.20058 6.28438 6.34268 6.41518 6.60781 6.90081 7.42475 8.95741 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010070 B = 0.003583 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.975046 B = 7812.079326 C = 9742.279357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.068 4.068 3 H 0.055 0.945 4 C 0.036 3.964 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.077 3.923 14 N -0.495 5.495 15 C 0.100 3.900 16 C -0.140 4.140 17 C -0.054 4.054 18 C -0.204 4.204 19 C 0.201 3.799 20 N -0.648 5.648 21 C 0.093 3.907 22 C 0.090 3.910 23 C -0.208 4.208 24 C -0.078 4.078 25 C -0.001 4.001 26 C -0.215 4.215 27 C -0.155 4.155 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.027 0.973 31 H -0.016 1.016 32 H -0.014 1.014 33 H 0.262 0.738 34 H 0.017 0.983 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.097 0.903 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.122 0.878 47 H 0.112 0.888 48 H 0.105 0.895 49 H 0.102 0.898 50 H 0.097 0.903 51 H 0.106 0.894 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.037 -2.785 22.799 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.002 4.002 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.050 4.050 14 N -0.216 5.216 15 C -0.027 4.027 16 C -0.142 4.142 17 C -0.073 4.073 18 C -0.226 4.226 19 C 0.098 3.902 20 N -0.360 5.360 21 C -0.050 4.050 22 C -0.053 4.053 23 C -0.230 4.230 24 C -0.097 4.097 25 C -0.110 4.110 26 C -0.254 4.254 27 C -0.193 4.193 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.003 0.997 32 H 0.004 0.996 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.140 0.860 47 H 0.130 0.870 48 H 0.123 0.877 49 H 0.120 0.880 50 H 0.115 0.885 51 H 0.124 0.876 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.636 -2.982 22.668 24.440 hybrid contribution 1.053 -0.202 -1.387 1.753 sum -7.583 -3.185 21.281 22.815 Atomic orbital electron populations 1.21401 0.94986 0.99764 1.00188 1.20999 0.96380 0.98385 0.92920 0.92714 1.18980 0.93888 0.94515 0.92804 1.21621 1.34342 1.08526 0.92061 0.92187 1.25943 0.95265 0.96079 1.02592 1.70104 1.40332 1.22956 1.24229 0.85521 0.79037 0.78414 0.78546 1.19810 1.20874 1.18783 1.21988 0.96386 0.97044 0.89604 1.61879 1.55851 1.02341 1.01571 1.21052 0.94815 0.93730 0.93057 1.19544 0.96944 0.93910 1.03819 1.20871 0.91754 0.98750 0.95923 1.20856 1.01582 0.91876 1.08301 1.17988 0.88862 0.89189 0.94111 1.46555 1.14901 1.08560 1.65976 1.21686 1.02537 0.82078 0.98674 1.21792 0.83288 1.02688 0.97487 1.20704 0.94149 1.00352 1.07844 1.20912 0.98670 0.93004 0.97119 1.22755 1.00484 0.92756 0.94988 1.23604 0.94012 1.04373 1.03432 1.23102 0.97884 0.98354 0.99965 0.91792 0.94506 0.95366 0.99746 0.99565 0.92972 0.96441 0.91751 0.94547 0.88530 0.84933 0.84521 0.92680 0.88707 0.93790 0.93585 0.89625 0.90880 0.85983 0.86978 0.87684 0.87967 0.88501 0.87594 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.40 8.89 71.98 0.64 -3.76 16 2 C -0.07 -2.96 2.29 -10.80 -0.02 -2.98 16 3 H 0.05 2.38 6.26 -2.39 -0.01 2.36 16 4 C 0.04 1.96 4.45 29.85 0.13 2.09 16 5 C -0.53 -30.72 8.41 25.60 0.22 -30.51 16 6 H 0.06 3.37 7.05 -2.91 -0.02 3.35 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.94 -58.39 13.29 21.45 0.28 -58.11 16 9 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 13 C 0.08 2.88 4.17 86.30 0.36 3.24 16 14 N -0.50 -14.89 4.10 -875.52 -3.59 -18.48 16 15 C 0.10 2.56 3.76 85.56 0.32 2.88 16 16 C -0.14 -3.74 5.01 -19.84 -0.10 -3.84 16 17 C -0.05 -1.31 9.71 22.25 0.22 -1.09 16 18 C -0.20 -4.74 9.21 22.40 0.21 -4.53 16 19 C 0.20 4.95 6.55 38.21 0.25 5.20 16 20 N -0.65 -12.78 3.41 -747.28 -2.55 -15.33 16 21 C 0.09 1.47 9.40 127.77 1.20 2.67 16 22 C 0.09 1.23 10.16 127.77 1.30 2.52 16 23 C -0.21 -5.56 9.31 22.40 0.21 -5.35 16 24 C -0.08 -2.19 8.37 22.25 0.19 -2.00 16 25 C 0.00 -0.02 5.82 44.91 0.26 0.24 16 26 C -0.22 -4.71 9.57 30.62 0.29 -4.42 16 27 C -0.16 -3.25 9.91 30.62 0.30 -2.94 16 28 H 0.06 2.37 7.75 -2.39 -0.02 2.35 16 29 H 0.04 1.60 6.95 -2.38 -0.02 1.58 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 33 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 35 H 0.06 2.51 6.31 -2.39 -0.02 2.49 16 36 H 0.04 0.96 7.72 -2.38 -0.02 0.94 16 37 H 0.10 2.09 5.56 -2.39 -0.01 2.08 16 38 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 39 H 0.14 2.55 6.14 -2.92 -0.02 2.53 16 40 H 0.05 0.83 7.95 -2.39 -0.02 0.81 16 41 H 0.09 1.00 7.79 -2.39 -0.02 0.98 16 42 H 0.04 0.79 7.95 -2.39 -0.02 0.77 16 43 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.09 0.78 7.92 -2.39 -0.02 0.76 16 45 H 0.07 0.91 6.20 -2.39 -0.01 0.90 16 46 H 0.12 2.99 6.74 -2.91 -0.02 2.97 16 47 H 0.11 3.14 8.01 -2.91 -0.02 3.12 16 48 H 0.11 3.30 6.29 -2.38 -0.02 3.28 16 49 H 0.10 2.10 6.04 -2.38 -0.01 2.08 16 50 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 52 H 0.10 1.97 7.43 -2.39 -0.02 1.95 16 Total: -1.00 -68.38 401.49 3.48 -64.90 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.88 Total: 21.75 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 6.43 Total: -42.20 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -5.85 Total: -91.92 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.38 3.48 -64.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876570711.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.071 kcal (2) G-P(sol) polarization free energy of solvation -68.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds