Wall clock time and date at job start Tue Mar 31 2020 11:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47118 * 2 1 4 4 C 1.53002 * 109.47360 * 119.99898 * 2 1 3 5 5 C 1.50695 * 109.47013 * 295.00003 * 4 2 1 6 6 H 1.07991 * 119.99971 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99457 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00165 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99598 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47288 * 60.00457 * 9 7 5 11 11 H 1.48498 * 109.46941 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47227 * 300.00213 * 9 7 5 13 13 C 1.53004 * 109.47176 * 240.00020 * 2 1 3 14 14 N 1.46902 * 109.46840 * 64.99801 * 13 2 1 15 15 C 1.48535 * 111.00011 * 52.60453 * 14 13 2 16 16 C 1.54945 * 103.22720 * 159.71987 * 15 14 13 17 17 C 1.54589 * 102.91944 * 322.58614 * 16 15 14 18 18 C 1.47898 * 111.00102 * 170.00129 * 14 13 2 19 19 H 1.09005 * 110.08453 * 333.59924 * 18 14 13 20 20 C 1.50698 * 109.91951 * 94.80375 * 18 14 13 21 21 C 1.38302 * 119.96469 * 39.04415 * 20 18 14 22 22 C 1.38263 * 120.15485 * 180.02562 * 21 20 18 23 23 C 1.38122 * 120.07088 * 359.97438 * 22 21 20 24 24 C 1.38894 * 119.92902 * 0.28110 * 23 22 21 25 25 N 1.39672 * 120.08053 * 179.74671 * 24 23 22 26 26 C 1.46507 * 119.99425 * 354.29615 * 25 24 23 27 27 C 1.46494 * 120.00460 * 174.30143 * 25 24 23 28 28 C 1.38088 * 119.96066 * 219.06726 * 20 18 14 29 29 H 1.08996 * 109.46887 * 299.99457 * 1 2 3 30 30 H 1.08999 * 109.47187 * 60.00264 * 1 2 3 31 31 H 1.09005 * 109.46623 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46638 * 55.00265 * 4 2 1 33 33 H 1.08999 * 109.46954 * 174.99747 * 4 2 1 34 34 H 0.97000 * 120.00009 * 179.97438 * 8 7 5 35 35 H 1.08990 * 109.47331 * 305.00263 * 13 2 1 36 36 H 1.09002 * 109.47318 * 184.99399 * 13 2 1 37 37 H 1.08996 * 110.66884 * 41.28898 * 15 14 13 38 38 H 1.08995 * 110.81239 * 278.21980 * 15 14 13 39 39 H 1.08998 * 110.72398 * 204.22670 * 16 15 14 40 40 H 1.09000 * 110.72142 * 80.94191 * 16 15 14 41 41 H 1.08998 * 110.31074 * 263.04167 * 17 16 15 42 42 H 1.09001 * 110.39550 * 140.91559 * 17 16 15 43 43 H 1.08005 * 119.92602 * 0.02562 * 21 20 18 44 44 H 1.07998 * 119.96305 * 180.02562 * 22 21 20 45 45 H 1.08001 * 120.03926 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.47082 * 90.00474 * 26 25 24 47 47 H 1.09005 * 109.46950 * 210.00176 * 26 25 24 48 48 H 1.09002 * 109.47127 * 329.99861 * 26 25 24 49 49 H 1.09004 * 109.46690 * 5.06709 * 27 25 24 50 50 H 1.08994 * 109.47459 * 125.07280 * 27 25 24 51 51 H 1.09004 * 109.46922 * 245.07395 * 27 25 24 52 52 H 1.07996 * 120.04079 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0801 0.9741 2.3756 7 6 1.9925 -0.4023 3.7283 8 7 2.6757 -1.5193 3.8511 9 14 1.4978 0.5621 5.2497 10 1 0.0178 0.6685 5.3088 11 1 1.9930 -0.1379 6.4621 12 1 2.0898 1.9225 5.1876 13 6 2.0400 -0.7213 -1.2493 14 7 1.6513 0.0374 -2.4456 15 6 2.0753 1.4568 -2.3369 16 6 2.0775 1.9400 -3.8090 17 6 2.6028 0.7056 -4.5772 18 6 2.3239 -0.4930 -3.6513 19 1 3.2618 -0.9750 -3.3753 20 6 1.4245 -1.4814 -4.3479 21 6 0.0648 -1.2414 -4.4275 22 6 -0.7640 -2.1458 -5.0652 23 6 -0.2359 -3.2925 -5.6257 24 6 1.1284 -3.5393 -5.5431 25 7 1.6650 -4.7004 -6.1042 26 6 0.7765 -5.7187 -6.6699 27 6 3.1161 -4.9001 -6.1269 28 6 1.9590 -2.6260 -4.9057 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2951 33 1 3.1264 -0.7994 1.2055 34 1 2.9230 -1.8422 4.7317 35 1 1.6054 -1.7197 -1.2952 36 1 3.1264 -0.7994 -1.2057 37 1 3.0745 1.5281 -1.9072 38 1 1.3616 2.0299 -1.7450 39 1 2.7503 2.7882 -3.9356 40 1 1.0684 2.1951 -4.1327 41 1 3.6730 0.8012 -4.7603 42 1 2.0674 0.5884 -5.5194 43 1 -0.3506 -0.3453 -3.9904 44 1 -1.8252 -1.9551 -5.1259 45 1 -0.8837 -3.9984 -6.1241 46 1 0.6058 -5.5062 -7.7253 47 1 1.2377 -6.7010 -6.5670 48 1 -0.1750 -5.7066 -6.1382 49 1 3.6029 -4.0885 -5.5860 50 1 3.3596 -5.8506 -5.6523 51 1 3.4654 -4.9094 -7.1594 52 1 3.0208 -2.8128 -4.8434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876749112.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:30 Heat of formation + Delta-G solvation = 14.091860 kcal Electronic energy + Delta-G solvation = -26950.759855 eV Core-core repulsion = 23528.002960 eV Total energy + Delta-G solvation = -3422.756895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04761 -39.75274 -37.30073 -36.57229 -34.49070 -32.71642 -31.98249 -30.91413 -29.53591 -28.76281 -28.14278 -26.83109 -25.63825 -24.77167 -23.03775 -22.55726 -22.06756 -20.42810 -20.16927 -18.53513 -18.27415 -17.03074 -16.66536 -16.43579 -16.34368 -16.09521 -15.90762 -15.70312 -15.23592 -14.80368 -14.59655 -14.38216 -14.19414 -14.11294 -13.71155 -13.60934 -13.36616 -13.31112 -13.15887 -12.93795 -12.79480 -12.73414 -12.62463 -12.47469 -12.33912 -12.20585 -12.08665 -11.95257 -11.87641 -11.69997 -11.41152 -11.30644 -11.06504 -10.91892 -10.58882 -10.53136 -9.56151 -9.33047 -8.17371 -8.10023 -6.26911 0.58191 0.82672 1.39665 1.42845 1.50398 2.29607 2.41898 2.94318 3.14949 3.15888 3.72106 3.82260 3.95038 4.03961 4.13925 4.18041 4.25902 4.33667 4.39047 4.40206 4.49279 4.51705 4.53101 4.65349 4.70015 4.74292 4.78522 4.82349 4.87965 4.90185 4.92161 4.94756 4.98410 5.00887 5.01847 5.10324 5.18273 5.25380 5.28371 5.35881 5.42733 5.46308 5.49185 5.54546 5.77650 5.79251 5.86545 5.87909 6.03748 6.11904 6.19019 6.31763 6.41672 6.63989 6.88724 7.41322 8.94761 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.002975 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.972462 B = 9409.345862 C =10274.906984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 H 0.060 0.940 4 C 0.035 3.965 5 C -0.528 4.528 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.071 3.929 14 N -0.502 5.502 15 C 0.030 3.970 16 C -0.112 4.112 17 C -0.112 4.112 18 C 0.099 3.901 19 H 0.046 0.954 20 C -0.027 4.027 21 C -0.155 4.155 22 C -0.083 4.083 23 C -0.209 4.209 24 C 0.200 3.800 25 N -0.649 5.649 26 C 0.093 3.907 27 C 0.087 3.913 28 C -0.211 4.211 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.031 0.969 32 H -0.015 1.015 33 H -0.017 1.017 34 H 0.262 0.738 35 H 0.054 0.946 36 H 0.018 0.982 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.054 0.946 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.062 0.938 51 H 0.063 0.937 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 -1.619 -25.379 25.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 H 0.078 0.922 4 C -0.003 4.003 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.191 1.191 13 C -0.058 4.058 14 N -0.225 5.225 15 C -0.097 4.097 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.009 4.009 19 H 0.064 0.936 20 C -0.028 4.028 21 C -0.175 4.175 22 C -0.101 4.101 23 C -0.232 4.232 24 C 0.099 3.901 25 N -0.362 5.362 26 C -0.050 4.050 27 C -0.056 4.056 28 C -0.234 4.234 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.004 0.996 33 H 0.001 0.999 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.139 0.861 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.072 0.928 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.748 -1.962 -25.380 25.603 hybrid contribution 1.024 -0.176 1.461 1.793 sum -1.724 -2.139 -23.919 24.076 Atomic orbital electron populations 1.21464 0.94610 1.00208 1.00505 1.21062 0.96722 0.98550 0.92716 0.92195 1.18988 0.93842 0.94550 0.92906 1.21591 1.34468 1.08597 0.91955 0.91951 1.25974 0.95234 0.96087 1.02706 1.70105 1.40306 1.23004 1.24332 0.85552 0.78968 0.78796 0.78062 1.19186 1.21045 1.19101 1.22126 0.96376 0.97185 0.90082 1.64646 1.54345 1.02326 1.01183 1.23273 0.98927 0.89235 0.98270 1.22467 1.02470 0.97327 0.92729 1.22387 1.01728 0.92652 0.98246 1.21348 0.93635 0.95076 0.90861 0.93556 1.19510 0.94471 0.93562 0.95295 1.20812 0.92912 1.01278 1.02491 1.21150 1.00142 0.93243 0.95581 1.20844 0.93365 1.00585 1.08362 1.17912 0.92723 0.86991 0.92492 1.46486 1.06337 1.18582 1.64793 1.21701 0.94388 0.90795 0.98101 1.21771 0.79576 1.02222 1.02046 1.20656 0.99663 0.96378 1.06680 0.94144 0.91483 0.95025 0.99639 0.99887 0.92952 0.92758 0.96412 0.94624 0.90044 0.89349 0.90238 0.90393 0.90342 0.86145 0.84670 0.84897 0.92759 0.90333 0.91475 0.90969 0.91941 0.91876 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.40 8.89 71.98 0.64 -3.76 16 2 C -0.07 -3.05 2.02 -10.79 -0.02 -3.07 16 3 H 0.06 2.51 6.52 -2.39 -0.02 2.50 16 4 C 0.03 1.89 4.45 29.85 0.13 2.03 16 5 C -0.53 -30.46 8.41 25.60 0.22 -30.24 16 6 H 0.06 3.44 7.05 -2.92 -0.02 3.42 16 7 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 8 N -0.94 -58.46 13.29 21.45 0.28 -58.18 16 9 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.07 2.65 4.42 86.30 0.38 3.03 16 14 N -0.50 -15.12 3.71 -862.42 -3.20 -18.32 16 15 C 0.03 0.82 5.08 86.65 0.44 1.26 16 16 C -0.11 -2.24 7.06 31.80 0.22 -2.02 16 17 C -0.11 -2.32 6.55 31.47 0.21 -2.11 16 18 C 0.10 2.64 2.66 44.31 0.12 2.75 16 19 H 0.05 1.31 7.46 -2.38 -0.02 1.30 16 20 C -0.03 -0.73 4.74 -19.89 -0.09 -0.82 16 21 C -0.15 -4.09 9.32 22.29 0.21 -3.88 16 22 C -0.08 -1.94 10.04 22.25 0.22 -1.72 16 23 C -0.21 -4.75 9.16 22.40 0.21 -4.54 16 24 C 0.20 4.80 6.54 38.22 0.25 5.05 16 25 N -0.65 -12.61 3.41 -747.25 -2.55 -15.16 16 26 C 0.09 1.28 10.10 127.77 1.29 2.57 16 27 C 0.09 1.34 10.62 127.77 1.36 2.70 16 28 C -0.21 -5.42 8.94 22.40 0.20 -5.22 16 29 H 0.04 1.69 6.95 -2.39 -0.02 1.67 16 30 H 0.07 2.31 7.75 -2.39 -0.02 2.29 16 31 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 32 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 33 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 34 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.02 0.69 7.82 -2.39 -0.02 0.67 16 37 H 0.04 1.02 8.01 -2.39 -0.02 1.00 16 38 H 0.08 2.25 7.56 -2.39 -0.02 2.23 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.55 7.68 -2.39 -0.02 1.54 16 43 H 0.12 3.26 7.70 -2.91 -0.02 3.23 16 44 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 45 H 0.13 2.44 6.31 -2.91 -0.02 2.42 16 46 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 47 H 0.08 0.84 8.07 -2.38 -0.02 0.82 16 48 H 0.07 0.93 6.45 -2.39 -0.02 0.91 16 49 H 0.07 1.20 5.31 -2.38 -0.01 1.18 16 50 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 52 H 0.12 2.90 5.72 -2.91 -0.02 2.88 16 Total: -1.00 -67.81 399.88 3.87 -63.94 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.86 Total: 18.30 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 6.44 Total: -37.71 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -5.46 Total: -91.66 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.81 3.87 -63.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876749112.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.030 kcal (2) G-P(sol) polarization free energy of solvation -67.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds