Wall clock time and date at job start Tue Mar 31 2020 10:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46909 * 2 1 4 4 C 1.38283 * 119.92667 * 269.72883 * 3 2 1 5 5 C 1.38112 * 120.07217 * 179.73210 * 4 3 2 6 6 C 1.38911 * 119.92431 * 0.53781 * 5 4 3 7 7 N 1.39667 * 120.07616 * 179.70841 * 6 5 4 8 8 C 1.46959 * 111.00216 * 123.82435 * 7 6 5 9 9 C 1.53046 * 109.36602 * 176.81344 * 8 7 6 10 10 N 1.46960 * 109.36331 * 58.40297 * 9 8 7 11 11 C 1.46909 * 110.99921 * 176.81273 * 10 9 8 12 12 C 1.53004 * 109.46666 * 307.67293 * 11 10 9 13 13 H 1.08997 * 109.47221 * 57.73981 * 12 11 10 14 14 C 1.53002 * 109.46964 * 297.73437 * 12 11 10 15 15 C 1.52997 * 109.46654 * 177.73912 * 12 11 10 16 16 C 1.50698 * 109.47351 * 184.99418 * 15 12 11 17 17 H 1.08013 * 119.99700 * 0.02562 * 16 15 12 18 18 C 1.37872 * 120.00747 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99434 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00485 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47125 * 90.00062 * 20 18 16 22 22 H 1.48503 * 109.47568 * 209.99932 * 20 18 16 23 23 H 1.48499 * 109.47331 * 330.00430 * 20 18 16 24 24 C 1.46955 * 110.88075 * 300.67628 * 10 9 8 25 25 C 1.46963 * 111.00081 * 0.02735 * 7 6 5 26 26 C 1.38912 * 119.84943 * 359.73620 * 6 5 4 27 27 C 1.38100 * 119.92574 * 359.97438 * 26 6 5 28 28 H 1.08999 * 109.46864 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46983 * 59.99789 * 1 2 3 30 30 H 1.08995 * 109.46628 * 299.99615 * 1 2 3 31 31 H 1.08995 * 109.47379 * 120.00645 * 2 1 3 32 32 H 1.09003 * 109.46946 * 240.00370 * 2 1 3 33 33 H 1.08000 * 119.96513 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.03721 * 180.27748 * 5 4 3 35 35 H 1.08995 * 109.48533 * 296.78237 * 8 7 6 36 36 H 1.09000 * 109.48263 * 56.84826 * 8 7 6 37 37 H 1.08999 * 109.48837 * 298.43698 * 9 8 7 38 38 H 1.09001 * 109.48878 * 178.37201 * 9 8 7 39 39 H 1.08999 * 109.47237 * 67.66845 * 11 10 9 40 40 H 1.08993 * 109.47038 * 187.67008 * 11 10 9 41 41 H 1.09002 * 109.46662 * 60.00756 * 14 12 11 42 42 H 1.09000 * 109.47080 * 179.97438 * 14 12 11 43 43 H 1.09001 * 109.47200 * 300.00629 * 14 12 11 44 44 H 1.08995 * 109.47602 * 305.00006 * 15 12 11 45 45 H 1.09006 * 109.47196 * 65.00279 * 15 12 11 46 46 H 0.97005 * 119.99852 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.49120 * 299.35391 * 24 10 9 48 48 H 1.09004 * 109.48896 * 179.28928 * 24 10 9 49 49 H 1.09001 * 109.48459 * 303.15376 * 25 7 6 50 50 H 1.08995 * 109.48752 * 63.19319 * 25 7 6 51 51 H 1.08007 * 120.03525 * 180.02562 * 26 6 5 52 52 H 1.08001 * 119.96141 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2676 2.0694 -1.1984 5 6 2.7227 3.3734 -1.2020 6 6 2.9546 4.0296 0.0002 7 7 3.4206 5.3463 0.0003 8 6 2.5218 6.2231 0.7638 9 6 3.1072 7.6365 0.8067 10 7 3.2826 8.1331 -0.5653 11 6 3.7728 9.5180 -0.5652 12 6 2.8667 10.3796 0.3167 13 1 2.8435 9.9676 1.3256 14 6 1.4508 10.3896 -0.2630 15 6 3.4094 11.8093 0.3621 16 6 2.5896 12.6275 1.3263 17 1 1.7643 12.1729 1.8543 18 6 2.8937 13.9559 1.5352 19 7 3.8990 14.5093 0.8926 20 14 1.8780 14.9698 2.7309 21 1 2.4730 14.8770 4.0883 22 1 1.8662 16.3883 2.2916 23 1 0.4873 14.4501 2.7635 24 6 4.1815 7.2564 -1.3288 25 6 3.5961 5.8430 -1.3717 26 6 2.7226 3.3732 1.2022 27 6 2.2619 2.0713 1.1985 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.0916 1.5570 -2.1327 34 1 2.9020 3.8809 -2.1383 35 1 1.5440 6.2489 0.2828 36 1 2.4179 5.8415 1.7795 37 1 4.0728 7.6149 1.3119 38 1 2.4279 8.2952 1.3479 39 1 4.7902 9.5433 -0.1750 40 1 3.7645 9.9064 -1.5836 41 1 1.0643 9.3709 -0.2952 42 1 0.8052 11.0030 0.3656 43 1 1.4742 10.8015 -1.2719 44 1 4.4484 11.7934 0.6910 45 1 3.3498 12.2523 -0.6321 46 1 4.1127 15.4440 1.0393 47 1 5.1594 7.2306 -0.8478 48 1 4.2855 7.6380 -2.3445 49 1 4.2754 5.1843 -1.9128 50 1 2.6306 5.8641 -1.8770 51 1 2.9016 3.8807 2.1387 52 1 2.0809 1.5606 2.1327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876769361.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:43 Heat of formation + Delta-G solvation = 19.879884 kcal Electronic energy + Delta-G solvation = -26304.972839 eV Core-core repulsion = 22882.466932 eV Total energy + Delta-G solvation = -3422.505907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.55770 -38.76037 -36.65720 -34.48068 -33.15966 -31.97326 -31.67971 -30.52175 -29.15852 -27.09563 -26.56894 -24.66484 -24.32067 -23.35416 -22.37438 -22.04716 -20.92691 -19.74706 -18.72424 -17.66565 -16.36459 -15.96842 -15.73140 -15.21502 -14.90415 -14.87493 -14.64550 -14.39119 -14.30066 -14.09687 -13.78616 -13.61896 -13.50447 -13.22090 -12.73655 -12.56603 -12.22569 -12.10956 -11.97259 -11.70364 -11.50464 -11.39459 -11.31191 -11.20187 -11.13032 -10.90851 -10.87290 -10.76485 -10.74342 -10.29713 -10.18762 -9.69670 -9.60577 -9.16256 -9.10105 -8.94186 -8.32897 -8.06576 -7.86755 -5.97806 -3.98956 1.19535 1.24363 3.32618 3.39103 3.42200 3.42928 3.75550 4.09325 4.47985 4.55190 4.55553 4.75055 4.82434 4.83945 5.01256 5.06858 5.11734 5.19869 5.25113 5.26936 5.35449 5.37961 5.39519 5.43550 5.56280 5.60473 5.62652 5.69760 5.72168 5.80182 5.87062 5.88250 5.89580 6.00519 6.06369 6.13082 6.16883 6.18971 6.40820 6.47010 6.51159 6.62481 6.63942 6.86915 6.98819 7.10399 7.16354 7.19562 7.34028 7.39929 7.68801 7.84452 8.02106 8.45876 9.07208 9.64369 11.13661 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.002166 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.487690 B =12923.943392 C =13452.131050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.115 4.115 4 C -0.091 4.091 5 C -0.170 4.170 6 C 0.115 3.885 7 N -0.492 5.492 8 C 0.063 3.937 9 C 0.050 3.950 10 N -0.536 5.536 11 C 0.061 3.939 12 C -0.086 4.086 13 H 0.057 0.943 14 C -0.123 4.123 15 C 0.028 3.972 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.054 3.946 25 C 0.056 3.944 26 C -0.139 4.139 27 C -0.093 4.093 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.096 0.904 39 H 0.029 0.971 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.054 0.946 43 H 0.041 0.959 44 H 0.012 0.988 45 H 0.016 0.984 46 H 0.259 0.741 47 H 0.040 0.960 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.054 0.946 51 H 0.124 0.876 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -27.797 -3.769 28.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.116 4.116 4 C -0.110 4.110 5 C -0.190 4.190 6 C 0.017 3.983 7 N -0.207 5.207 8 C -0.062 4.062 9 C -0.078 4.078 10 N -0.261 5.261 11 C -0.065 4.065 12 C -0.105 4.105 13 H 0.076 0.924 14 C -0.180 4.180 15 C -0.010 4.010 16 C -0.550 4.550 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.075 4.075 25 C -0.071 4.071 26 C -0.159 4.159 27 C -0.111 4.111 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.114 0.886 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.035 0.965 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.072 0.928 51 H 0.142 0.858 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.018 -27.518 -3.792 27.941 hybrid contribution -0.185 0.751 0.657 1.015 sum -3.203 -26.767 -3.135 27.140 Atomic orbital electron populations 1.21759 0.94966 1.01469 1.02242 1.20474 0.96000 0.92810 1.02501 1.19775 1.02179 0.96523 0.93162 1.20843 0.98487 0.94264 0.97394 1.21307 1.04003 0.96338 0.97389 1.19005 0.94910 0.90718 0.93669 1.59251 1.45709 1.00379 1.15333 1.22343 0.93885 0.91997 0.97972 1.22285 1.00794 0.94008 0.90737 1.62255 1.47873 1.02760 1.13196 1.22310 0.96818 0.86261 1.01159 1.21317 0.94756 0.97613 0.96793 0.92445 1.21594 0.96751 0.99483 1.00192 1.19115 0.95922 0.88758 0.97197 1.21217 1.14730 0.94945 1.24139 0.92615 1.25024 0.95318 0.98048 0.96214 1.69968 1.28547 1.12740 1.42347 0.86629 0.80703 0.79527 0.81345 1.20779 1.21312 1.19903 1.22158 0.94563 0.91509 0.99241 1.22339 1.00880 0.95803 0.88080 1.20788 1.03137 0.95145 0.96877 1.20853 0.98610 0.94219 0.97449 0.92616 0.92622 0.92576 0.91313 0.91358 0.86359 0.85597 0.92995 0.89953 0.94112 0.88605 0.95268 0.91046 0.94127 0.92731 0.94006 0.96927 0.96533 0.93108 0.94161 0.90061 0.90019 0.92771 0.85818 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.08 -0.54 6.06 -27.88 -0.17 -0.71 16 3 C -0.12 -1.03 5.14 -104.59 -0.54 -1.56 16 4 C -0.09 -0.84 9.69 -39.61 -0.38 -1.23 16 5 C -0.17 -1.74 8.82 -39.38 -0.35 -2.09 16 6 C 0.12 1.31 5.64 -83.79 -0.47 0.83 16 7 N -0.49 -5.89 4.75 -170.96 -0.81 -6.70 16 8 C 0.06 0.77 5.38 -3.77 -0.02 0.75 16 9 C 0.05 0.70 5.12 -3.77 -0.02 0.68 16 10 N -0.54 -7.88 4.15 -234.46 -0.97 -8.86 16 11 C 0.06 1.06 4.55 -3.82 -0.02 1.04 16 12 C -0.09 -1.73 1.86 -90.62 -0.17 -1.90 16 13 H 0.06 1.16 6.11 -51.93 -0.32 0.84 16 14 C -0.12 -2.35 8.80 37.16 0.33 -2.02 16 15 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 16 C -0.51 -14.24 8.41 -34.44 -0.29 -14.53 16 17 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 20 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 24 C 0.05 0.68 5.62 -3.77 -0.02 0.66 16 25 C 0.06 0.63 4.30 -3.77 -0.02 0.61 16 26 C -0.14 -1.46 9.19 -39.38 -0.36 -1.82 16 27 C -0.09 -0.86 9.69 -39.61 -0.38 -1.24 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.13 1.16 5.81 -52.49 -0.31 0.86 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.90 6.82 -51.93 -0.35 0.54 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.42 5.87 -51.93 -0.30 1.12 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.04 0.69 7.62 -51.93 -0.40 0.30 16 42 H 0.05 1.12 6.95 -51.93 -0.36 0.75 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.08 0.80 7.17 -51.93 -0.37 0.43 16 50 H 0.05 0.62 7.58 -51.93 -0.39 0.22 16 51 H 0.12 1.21 7.18 -52.48 -0.38 0.83 16 52 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -29.96 397.56 -12.26 -42.21 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -9.44 Total: -2.07 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -2.73 Total: -21.05 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -1.05 Total: -41.75 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.96 -12.26 -42.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876769361.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.093 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds