Wall clock time and date at job start Tue Mar 31 2020 10:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46909 * 2 1 4 4 C 1.38283 * 119.92667 * 269.72883 * 3 2 1 5 5 C 1.38112 * 120.07217 * 179.73210 * 4 3 2 6 6 C 1.38911 * 119.92431 * 0.53781 * 5 4 3 7 7 N 1.39667 * 120.07616 * 179.70841 * 6 5 4 8 8 C 1.46959 * 111.00216 * 123.82435 * 7 6 5 9 9 C 1.53046 * 109.36602 * 176.81344 * 8 7 6 10 10 N 1.46960 * 109.36331 * 58.40297 * 9 8 7 11 11 C 1.46909 * 110.99921 * 176.81273 * 10 9 8 12 12 C 1.53004 * 109.46666 * 307.67293 * 11 10 9 13 13 H 1.08997 * 109.47221 * 57.73981 * 12 11 10 14 14 C 1.53002 * 109.46964 * 297.73437 * 12 11 10 15 15 C 1.52997 * 109.46654 * 177.73912 * 12 11 10 16 16 C 1.50698 * 109.47351 * 184.99418 * 15 12 11 17 17 H 1.08013 * 119.99700 * 0.02562 * 16 15 12 18 18 C 1.37872 * 120.00747 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99434 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00485 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47125 * 90.00062 * 20 18 16 22 22 H 1.48503 * 109.47568 * 209.99932 * 20 18 16 23 23 H 1.48499 * 109.47331 * 330.00430 * 20 18 16 24 24 C 1.46955 * 110.88075 * 300.67628 * 10 9 8 25 25 C 1.46963 * 111.00081 * 0.02735 * 7 6 5 26 26 C 1.38912 * 119.84943 * 359.73620 * 6 5 4 27 27 C 1.38100 * 119.92574 * 359.97438 * 26 6 5 28 28 H 1.08999 * 109.46864 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46983 * 59.99789 * 1 2 3 30 30 H 1.08995 * 109.46628 * 299.99615 * 1 2 3 31 31 H 1.08995 * 109.47379 * 120.00645 * 2 1 3 32 32 H 1.09003 * 109.46946 * 240.00370 * 2 1 3 33 33 H 1.08000 * 119.96513 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.03721 * 180.27748 * 5 4 3 35 35 H 1.08995 * 109.48533 * 296.78237 * 8 7 6 36 36 H 1.09000 * 109.48263 * 56.84826 * 8 7 6 37 37 H 1.08999 * 109.48837 * 298.43698 * 9 8 7 38 38 H 1.09001 * 109.48878 * 178.37201 * 9 8 7 39 39 H 1.08999 * 109.47237 * 67.66845 * 11 10 9 40 40 H 1.08993 * 109.47038 * 187.67008 * 11 10 9 41 41 H 1.09002 * 109.46662 * 60.00756 * 14 12 11 42 42 H 1.09000 * 109.47080 * 179.97438 * 14 12 11 43 43 H 1.09001 * 109.47200 * 300.00629 * 14 12 11 44 44 H 1.08995 * 109.47602 * 305.00006 * 15 12 11 45 45 H 1.09006 * 109.47196 * 65.00279 * 15 12 11 46 46 H 0.97005 * 119.99852 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.49120 * 299.35391 * 24 10 9 48 48 H 1.09004 * 109.48896 * 179.28928 * 24 10 9 49 49 H 1.09001 * 109.48459 * 303.15376 * 25 7 6 50 50 H 1.08995 * 109.48752 * 63.19319 * 25 7 6 51 51 H 1.08007 * 120.03525 * 180.02562 * 26 6 5 52 52 H 1.08001 * 119.96141 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2676 2.0694 -1.1984 5 6 2.7227 3.3734 -1.2020 6 6 2.9546 4.0296 0.0002 7 7 3.4206 5.3463 0.0003 8 6 2.5218 6.2231 0.7638 9 6 3.1072 7.6365 0.8067 10 7 3.2826 8.1331 -0.5653 11 6 3.7728 9.5180 -0.5652 12 6 2.8667 10.3796 0.3167 13 1 2.8435 9.9676 1.3256 14 6 1.4508 10.3896 -0.2630 15 6 3.4094 11.8093 0.3621 16 6 2.5896 12.6275 1.3263 17 1 1.7643 12.1729 1.8543 18 6 2.8937 13.9559 1.5352 19 7 3.8990 14.5093 0.8926 20 14 1.8780 14.9698 2.7309 21 1 2.4730 14.8770 4.0883 22 1 1.8662 16.3883 2.2916 23 1 0.4873 14.4501 2.7635 24 6 4.1815 7.2564 -1.3288 25 6 3.5961 5.8430 -1.3717 26 6 2.7226 3.3732 1.2022 27 6 2.2619 2.0713 1.1985 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.0916 1.5570 -2.1327 34 1 2.9020 3.8809 -2.1383 35 1 1.5440 6.2489 0.2828 36 1 2.4179 5.8415 1.7795 37 1 4.0728 7.6149 1.3119 38 1 2.4279 8.2952 1.3479 39 1 4.7902 9.5433 -0.1750 40 1 3.7645 9.9064 -1.5836 41 1 1.0643 9.3709 -0.2952 42 1 0.8052 11.0030 0.3656 43 1 1.4742 10.8015 -1.2719 44 1 4.4484 11.7934 0.6910 45 1 3.3498 12.2523 -0.6321 46 1 4.1127 15.4440 1.0393 47 1 5.1594 7.2306 -0.8478 48 1 4.2855 7.6380 -2.3445 49 1 4.2754 5.1843 -1.9128 50 1 2.6306 5.8641 -1.8770 51 1 2.9016 3.8807 2.1387 52 1 2.0809 1.5606 2.1327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876769361.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:42 Heat of formation + Delta-G solvation = 4.672278 kcal Electronic energy + Delta-G solvation = -26305.632290 eV Core-core repulsion = 22882.466932 eV Total energy + Delta-G solvation = -3423.165358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42336 -39.74644 -37.83982 -35.88707 -34.37054 -33.50830 -32.59510 -31.39029 -30.14553 -28.79914 -27.81369 -26.07832 -25.28922 -24.42903 -23.67715 -22.94381 -21.76307 -20.75239 -20.27689 -18.66927 -18.33060 -16.79383 -16.71380 -16.40216 -16.19722 -16.06221 -15.89563 -15.60986 -15.34774 -14.92454 -14.79943 -14.52978 -14.30550 -14.19864 -14.06081 -14.02051 -13.40931 -13.30172 -13.11992 -12.96219 -12.77700 -12.69488 -12.51380 -12.46652 -12.32224 -12.21127 -12.04478 -11.91428 -11.84024 -11.74490 -11.55385 -11.36697 -11.05756 -10.87107 -10.53122 -10.50186 -9.82632 -9.29875 -8.67329 -8.17306 -6.26228 0.45323 0.51842 1.40115 1.40935 1.51952 2.41762 2.62505 2.90763 2.96883 3.16152 3.76261 3.88562 3.95588 3.98010 4.06682 4.10660 4.20534 4.23235 4.32340 4.39244 4.43332 4.47911 4.52393 4.54086 4.58744 4.63386 4.71012 4.76904 4.80998 4.83761 4.86476 4.90772 4.95878 5.01326 5.06636 5.08698 5.12719 5.19497 5.28260 5.36730 5.40329 5.45799 5.48875 5.49825 5.54527 5.79291 5.79884 5.86739 5.88327 5.99991 6.05212 6.15327 6.30817 6.38866 6.89547 7.41846 8.94666 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.002166 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.487690 B =12923.943392 C =13452.131050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.116 4.116 4 C -0.098 4.098 5 C -0.177 4.177 6 C 0.094 3.906 7 N -0.500 5.500 8 C 0.072 3.928 9 C 0.052 3.948 10 N -0.535 5.535 11 C 0.073 3.927 12 C -0.076 4.076 13 H 0.057 0.943 14 C -0.111 4.111 15 C 0.033 3.967 16 C -0.526 4.526 17 H 0.061 0.939 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.961 3.039 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.263 1.263 24 C 0.054 3.946 25 C 0.063 3.937 26 C -0.150 4.150 27 C -0.099 4.099 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.031 0.969 38 H 0.086 0.914 39 H 0.018 0.982 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.037 0.963 44 H -0.016 1.016 45 H -0.009 1.009 46 H 0.261 0.739 47 H 0.033 0.967 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.054 0.946 51 H 0.125 0.875 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 -29.974 -3.602 30.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.117 4.117 4 C -0.116 4.116 5 C -0.197 4.197 6 C -0.003 4.003 7 N -0.216 5.216 8 C -0.053 4.053 9 C -0.076 4.076 10 N -0.260 5.260 11 C -0.054 4.054 12 C -0.095 4.095 13 H 0.076 0.924 14 C -0.169 4.169 15 C -0.004 4.004 16 C -0.565 4.565 17 H 0.079 0.921 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.786 3.214 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.187 1.187 24 C -0.074 4.074 25 C -0.064 4.064 26 C -0.170 4.170 27 C -0.117 4.117 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.037 0.963 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.003 0.997 45 H 0.009 0.991 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.111 0.889 49 H 0.116 0.884 50 H 0.073 0.927 51 H 0.143 0.857 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.303 -29.726 -3.626 30.254 hybrid contribution 0.235 1.339 0.586 1.480 sum -4.068 -28.387 -3.040 28.838 Atomic orbital electron populations 1.21744 0.94611 1.02201 1.01725 1.20521 0.96198 0.91513 1.03435 1.20099 1.01175 0.97529 0.92915 1.21118 0.98043 0.94039 0.98425 1.21475 1.04006 0.96895 0.97360 1.19119 0.96304 0.90425 0.94449 1.59275 1.45926 1.00778 1.15584 1.22222 0.93443 0.90864 0.98786 1.22255 1.00145 0.95139 0.90095 1.62243 1.48203 1.01691 1.13840 1.22033 0.95521 0.87653 1.00205 1.21115 0.95805 0.94786 0.97771 0.92430 1.21470 0.95539 1.00519 0.99346 1.19002 0.94391 0.91919 0.95133 1.21617 1.14938 0.95545 1.24359 0.92070 1.25959 0.96516 0.99509 0.98121 1.70106 1.30270 1.13167 1.44025 0.85507 0.79385 0.77621 0.78907 1.19983 1.20992 1.18703 1.22240 0.93833 0.92063 0.99305 1.22304 1.01129 0.94901 0.88096 1.20937 1.03482 0.95812 0.96808 1.21105 0.98202 0.93905 0.98510 0.91297 0.93116 0.93117 0.90451 0.90405 0.84559 0.84834 0.93479 0.88855 0.95118 0.89550 0.96324 0.91091 0.91775 0.94285 0.94402 0.99746 0.99061 0.92995 0.94903 0.88905 0.88419 0.92734 0.85682 0.84513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.89 71.98 0.71 -0.79 16 2 C -0.08 -0.87 6.06 29.85 0.18 -0.69 16 3 C -0.12 -1.82 5.14 -19.84 -0.10 -1.93 16 4 C -0.10 -1.60 9.69 22.25 0.22 -1.39 16 5 C -0.18 -3.34 8.82 22.40 0.20 -3.14 16 6 C 0.09 2.02 5.64 38.22 0.22 2.24 16 7 N -0.50 -11.43 4.75 -694.80 -3.30 -14.73 16 8 C 0.07 1.69 5.38 86.31 0.46 2.16 16 9 C 0.05 1.43 5.12 86.31 0.44 1.87 16 10 N -0.54 -15.42 4.15 -895.70 -3.72 -19.13 16 11 C 0.07 2.56 4.55 86.30 0.39 2.95 16 12 C -0.08 -3.10 1.86 -10.79 -0.02 -3.12 16 13 H 0.06 2.35 6.11 -2.39 -0.01 2.33 16 14 C -0.11 -4.22 8.80 71.98 0.63 -3.59 16 15 C 0.03 1.75 4.45 29.85 0.13 1.88 16 16 C -0.53 -29.76 8.41 25.60 0.22 -29.55 16 17 H 0.06 3.32 7.06 -2.90 -0.02 3.30 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 20 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 24 C 0.05 1.30 5.62 86.31 0.48 1.78 16 25 C 0.06 1.31 4.30 86.31 0.37 1.68 16 26 C -0.15 -2.98 9.19 22.40 0.21 -2.77 16 27 C -0.10 -1.66 9.69 22.25 0.22 -1.44 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.72 8.08 -2.39 -0.02 0.71 16 32 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 33 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.13 2.21 5.81 -2.91 -0.02 2.20 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.95 6.82 -2.39 -0.02 1.93 16 37 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 2.53 5.87 -2.39 -0.01 2.52 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.06 2.11 7.62 -2.39 -0.02 2.10 16 42 H 0.04 1.57 6.95 -2.39 -0.02 1.56 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 45 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 46 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 47 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.09 2.02 8.14 -2.38 -0.02 2.01 16 49 H 0.10 1.73 7.17 -2.39 -0.02 1.72 16 50 H 0.05 1.15 7.58 -2.39 -0.02 1.13 16 51 H 0.13 2.34 7.18 -2.91 -0.02 2.32 16 52 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -64.58 397.56 1.57 -63.01 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.86 Total: 14.89 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 5.42 Total: -33.60 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -6.74 Total: -90.97 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -64.58 1.57 -63.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876769361.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.683 kcal (2) G-P(sol) polarization free energy of solvation -64.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds