Wall clock time and date at job start Tue Mar 31 2020 10:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47299 * 2 1 4 4 C 1.53005 * 109.47182 * 119.99682 * 2 1 3 5 5 C 1.50700 * 109.47038 * 294.99722 * 4 2 1 6 6 H 1.07997 * 120.00138 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00017 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99960 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00126 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46784 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47147 * 120.00199 * 9 7 5 12 12 H 1.48503 * 109.46660 * 239.99977 * 9 7 5 13 13 C 1.53003 * 109.47243 * 239.99503 * 2 1 3 14 14 N 1.46498 * 109.46708 * 65.00177 * 13 2 1 15 15 C 1.40005 * 119.99857 * 180.02562 * 14 13 2 16 16 C 1.38856 * 119.99883 * 179.97438 * 15 14 13 17 17 C 1.38094 * 120.00094 * 179.97438 * 16 15 14 18 18 C 1.38862 * 119.99708 * 0.02562 * 17 16 15 19 19 N 1.40005 * 119.99919 * 179.97438 * 18 17 16 20 20 C 1.46842 * 111.00042 * 304.21317 * 19 18 17 21 21 C 1.53032 * 109.52552 * 174.16253 * 20 19 18 22 22 C 1.53124 * 109.27717 * 59.17601 * 21 20 19 23 23 C 1.53009 * 109.57374 * 182.41087 * 22 21 20 24 24 C 1.53115 * 109.16002 * 302.34632 * 22 21 20 25 25 C 1.46844 * 110.99746 * 180.02562 * 19 18 17 26 26 C 1.38865 * 120.00010 * 0.23522 * 18 17 16 27 27 C 1.38088 * 119.99916 * 359.51080 * 26 18 17 28 28 H 1.08993 * 109.47298 * 60.00303 * 1 2 3 29 29 H 1.08997 * 109.46798 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46913 * 300.00254 * 1 2 3 31 31 H 1.08996 * 109.47298 * 55.00216 * 4 2 1 32 32 H 1.09007 * 109.47006 * 175.00191 * 4 2 1 33 33 H 0.97003 * 120.00153 * 179.97438 * 8 7 5 34 34 H 1.08989 * 109.47302 * 305.00197 * 13 2 1 35 35 H 1.08997 * 109.46998 * 184.99584 * 13 2 1 36 36 H 0.97000 * 120.00752 * 359.97438 * 14 13 2 37 37 H 1.08000 * 120.00632 * 359.97438 * 16 15 14 38 38 H 1.07999 * 120.00226 * 180.02562 * 17 16 15 39 39 H 1.09011 * 109.45898 * 294.17554 * 20 19 18 40 40 H 1.08996 * 109.46301 * 54.14113 * 20 19 18 41 41 H 1.09002 * 109.50098 * 299.24123 * 21 20 19 42 42 H 1.08996 * 109.53898 * 179.13520 * 21 20 19 43 43 H 1.08999 * 109.52464 * 62.25632 * 22 21 20 44 44 H 1.08997 * 109.46737 * 179.70960 * 23 22 21 45 45 H 1.08999 * 109.46749 * 299.71902 * 23 22 21 46 46 H 1.09000 * 109.46699 * 59.71446 * 23 22 21 47 47 H 1.09004 * 109.50745 * 297.71190 * 24 22 21 48 48 H 1.09002 * 109.53686 * 177.61650 * 24 22 21 49 49 H 1.09001 * 109.46456 * 305.84997 * 25 19 18 50 50 H 1.08998 * 109.46607 * 65.83752 * 25 19 18 51 51 H 1.07995 * 119.99589 * 179.74208 * 26 18 17 52 52 H 1.07999 * 120.00009 * 180.28115 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0801 0.9743 2.3757 7 6 1.9924 -0.4020 3.7283 8 7 2.6756 -1.5191 3.8513 9 14 1.4977 0.5625 5.2497 10 1 0.7415 1.7742 4.8433 11 1 0.6435 -0.2867 6.1181 12 1 2.7156 0.9671 5.9969 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0352 -2.4423 15 6 2.0089 -0.4312 -3.7134 16 6 1.6411 0.2856 -4.8443 17 6 1.9931 -0.1741 -6.0980 18 6 2.7144 -1.3536 -6.2276 19 7 3.0708 -1.8200 -7.4987 20 6 1.8871 -1.9738 -8.3538 21 6 2.3256 -2.3434 -9.7726 22 6 3.1218 -3.6507 -9.7312 23 6 3.6150 -3.9954 -11.1381 24 6 4.3220 -3.4787 -8.7961 25 6 3.8251 -3.0765 -7.4056 26 6 3.0775 -2.0733 -5.0969 27 6 2.7301 -1.6108 -3.8430 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6055 -1.7197 1.2953 32 1 3.1264 -0.7994 1.2056 33 1 2.9228 -1.8420 4.7319 34 1 1.6054 -1.7198 -1.2951 35 1 3.1263 -0.7995 -1.2055 36 1 1.1483 0.8589 -2.3519 37 1 1.0797 1.2027 -4.7435 38 1 1.7074 0.3836 -6.9776 39 1 1.2499 -2.7626 -7.9536 40 1 1.3321 -1.0360 -8.3779 41 1 2.9516 -1.5488 -10.1786 42 1 1.4465 -2.4727 -10.4039 43 1 2.4843 -4.4540 -9.3618 44 1 4.1858 -4.9233 -11.1057 45 1 2.7599 -4.1175 -11.8029 46 1 4.2505 -3.1906 -11.5075 47 1 4.9795 -2.7020 -9.1868 48 1 4.8695 -4.4189 -8.7290 49 1 4.6781 -2.9398 -6.7410 50 1 3.1785 -3.8599 -7.0103 51 1 3.6349 -2.9927 -5.1980 52 1 3.0164 -2.1681 -2.9634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876839522.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:12 Heat of formation + Delta-G solvation = 3.092007 kcal Electronic energy + Delta-G solvation = -25734.770194 eV Core-core repulsion = 22311.536310 eV Total energy + Delta-G solvation = -3423.233884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.39302 -38.60918 -36.68357 -34.97846 -33.24839 -31.86404 -31.70337 -30.42285 -29.16230 -27.26970 -26.63361 -25.35392 -24.13893 -23.09605 -22.66636 -21.60663 -20.68009 -19.89407 -19.23376 -17.60268 -16.60021 -16.45980 -15.65556 -15.02195 -14.90322 -14.86772 -14.57669 -14.46720 -14.32754 -14.10051 -13.53183 -13.50618 -13.26338 -13.15315 -12.67173 -12.55377 -12.48531 -12.36721 -12.04051 -11.92722 -11.83004 -11.53932 -11.46313 -11.09179 -10.97182 -10.93373 -10.87155 -10.63208 -10.47583 -10.41172 -10.32250 -10.12277 -9.78078 -9.31994 -9.04936 -8.83920 -8.66495 -8.38914 -6.81931 -6.03251 -4.05074 1.54534 1.74093 3.28731 3.36588 3.39944 3.62786 3.81924 4.04790 4.41533 4.43623 4.46226 4.49438 4.87837 4.98156 5.02977 5.06520 5.12503 5.22752 5.30484 5.32696 5.32841 5.37619 5.48619 5.51168 5.56211 5.58982 5.63093 5.67837 5.70401 5.75952 5.82939 5.84281 5.85336 5.91808 6.10003 6.14269 6.18379 6.25932 6.33621 6.39833 6.43535 6.56308 6.78910 6.85808 6.99473 7.03494 7.06386 7.33225 7.60993 7.66256 7.74747 7.95591 8.05575 8.38152 9.00889 9.58822 11.08153 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.036273 B = 0.001887 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.743258 B =14836.515215 C =15368.671757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 H 0.062 0.938 4 C 0.030 3.970 5 C -0.516 4.516 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.128 3.872 14 N -0.744 5.744 15 C 0.206 3.794 16 C -0.181 4.181 17 C -0.088 4.088 18 C 0.036 3.964 19 N -0.483 5.483 20 C 0.057 3.943 21 C -0.113 4.113 22 C -0.096 4.096 23 C -0.145 4.145 24 C -0.112 4.112 25 C 0.051 3.949 26 C -0.117 4.117 27 C -0.175 4.175 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.396 0.604 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.038 0.962 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.081 0.919 50 H 0.041 0.959 51 H 0.121 0.879 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 -2.943 -28.308 28.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 H 0.080 0.920 4 C -0.008 4.008 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.004 3.996 14 N -0.372 5.372 15 C 0.101 3.899 16 C -0.204 4.204 17 C -0.109 4.109 18 C -0.061 4.061 19 N -0.200 5.200 20 C -0.069 4.069 21 C -0.150 4.150 22 C -0.115 4.115 23 C -0.203 4.203 24 C -0.150 4.150 25 C -0.076 4.076 26 C -0.138 4.138 27 C -0.199 4.199 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.231 0.769 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.059 0.941 51 H 0.139 0.861 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.306 -2.862 -28.278 28.424 hybrid contribution -0.809 0.208 1.421 1.648 sum -0.504 -2.655 -26.858 26.993 Atomic orbital electron populations 1.21714 0.95951 1.01054 1.00154 1.21436 0.95618 0.99806 0.94636 0.91999 1.19087 0.96269 0.95540 0.89897 1.21234 1.34885 1.08360 0.90917 0.92499 1.25021 0.95253 0.95087 0.99154 1.69972 1.38893 1.21156 1.23396 0.86554 0.78280 0.80077 0.83206 1.19774 1.21050 1.21048 1.21584 0.98929 0.95082 0.84005 1.45023 1.61655 1.28037 1.02511 1.17902 0.93486 0.92969 0.85563 1.20434 1.07035 1.01784 0.91176 1.20410 0.98908 0.94879 0.96671 1.18605 1.02593 0.96661 0.88270 1.59299 1.21728 1.28578 1.10396 1.22217 0.90767 1.01121 0.92795 1.21681 0.99998 0.97506 0.95858 1.21208 0.96965 0.97565 0.95733 1.21806 1.01026 1.01384 0.96066 1.21680 0.97575 1.01454 0.94308 1.22220 0.98071 0.89615 0.97669 1.21024 1.01834 0.99172 0.91785 1.20573 1.04229 0.97496 0.97573 0.95082 0.93522 0.91812 0.96330 0.96448 0.93056 0.92829 0.92716 0.76900 0.86378 0.86368 0.94403 0.90329 0.91006 0.91469 0.91499 0.92740 0.92788 0.92584 0.91001 0.91393 0.90071 0.94097 0.86105 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.88 37.16 0.33 -2.04 16 2 C -0.10 -1.87 2.37 -90.62 -0.22 -2.08 16 3 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.52 -14.10 8.41 -34.44 -0.29 -14.39 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.13 2.15 4.30 -4.04 -0.02 2.13 16 14 N -0.74 -10.94 5.47 -58.57 -0.32 -11.26 16 15 C 0.21 2.95 6.66 -83.66 -0.56 2.39 16 16 C -0.18 -2.31 9.89 -39.41 -0.39 -2.70 16 17 C -0.09 -1.06 9.16 -39.40 -0.36 -1.42 16 18 C 0.04 0.45 5.65 -83.66 -0.47 -0.03 16 19 N -0.48 -5.07 4.71 -171.08 -0.81 -5.87 16 20 C 0.06 0.51 5.26 -3.84 -0.02 0.49 16 21 C -0.11 -0.80 5.38 -26.65 -0.14 -0.95 16 22 C -0.10 -0.65 2.79 -90.49 -0.25 -0.91 16 23 C -0.15 -0.83 9.21 37.16 0.34 -0.48 16 24 C -0.11 -0.83 5.38 -26.65 -0.14 -0.97 16 25 C 0.05 0.47 4.15 -3.83 -0.02 0.45 16 26 C -0.12 -1.49 8.82 -39.40 -0.35 -1.84 16 27 C -0.18 -2.49 9.31 -39.41 -0.37 -2.85 16 28 H 0.03 0.47 7.18 -51.93 -0.37 0.10 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.05 0.92 7.95 -51.94 -0.41 0.50 16 35 H 0.05 0.95 7.95 -51.93 -0.41 0.54 16 36 H 0.40 5.38 7.67 -40.82 -0.31 5.06 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.12 1.22 7.15 -52.49 -0.38 0.84 16 39 H 0.04 0.36 8.14 -51.92 -0.42 -0.07 16 40 H 0.08 0.67 6.70 -51.93 -0.35 0.33 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.76 6.99 -51.93 -0.36 0.39 16 50 H 0.04 0.38 7.73 -51.93 -0.40 -0.02 16 51 H 0.12 1.35 5.80 -52.49 -0.30 1.04 16 52 H 0.12 1.75 6.73 -52.49 -0.35 1.39 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -29.22 397.90 -12.00 -41.21 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -9.44 Total: 2.42 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -3.14 Total: -23.11 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.39 Total: -42.89 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.22 -12.00 -41.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876839522.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.306 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds