Wall clock time and date at job start Tue Mar 31 2020 10:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47299 * 2 1 4 4 C 1.53005 * 109.47182 * 119.99682 * 2 1 3 5 5 C 1.50700 * 109.47038 * 294.99722 * 4 2 1 6 6 H 1.07997 * 120.00138 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00017 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99960 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00126 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46784 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47147 * 120.00199 * 9 7 5 12 12 H 1.48503 * 109.46660 * 239.99977 * 9 7 5 13 13 C 1.53003 * 109.47243 * 239.99503 * 2 1 3 14 14 N 1.46498 * 109.46708 * 65.00177 * 13 2 1 15 15 C 1.40005 * 119.99857 * 180.02562 * 14 13 2 16 16 C 1.38856 * 119.99883 * 179.97438 * 15 14 13 17 17 C 1.38094 * 120.00094 * 179.97438 * 16 15 14 18 18 C 1.38862 * 119.99708 * 0.02562 * 17 16 15 19 19 N 1.40005 * 119.99919 * 179.97438 * 18 17 16 20 20 C 1.46842 * 111.00042 * 304.21317 * 19 18 17 21 21 C 1.53032 * 109.52552 * 174.16253 * 20 19 18 22 22 C 1.53124 * 109.27717 * 59.17601 * 21 20 19 23 23 C 1.53009 * 109.57374 * 182.41087 * 22 21 20 24 24 C 1.53115 * 109.16002 * 302.34632 * 22 21 20 25 25 C 1.46844 * 110.99746 * 180.02562 * 19 18 17 26 26 C 1.38865 * 120.00010 * 0.23522 * 18 17 16 27 27 C 1.38088 * 119.99916 * 359.51080 * 26 18 17 28 28 H 1.08993 * 109.47298 * 60.00303 * 1 2 3 29 29 H 1.08997 * 109.46798 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46913 * 300.00254 * 1 2 3 31 31 H 1.08996 * 109.47298 * 55.00216 * 4 2 1 32 32 H 1.09007 * 109.47006 * 175.00191 * 4 2 1 33 33 H 0.97003 * 120.00153 * 179.97438 * 8 7 5 34 34 H 1.08989 * 109.47302 * 305.00197 * 13 2 1 35 35 H 1.08997 * 109.46998 * 184.99584 * 13 2 1 36 36 H 0.97000 * 120.00752 * 359.97438 * 14 13 2 37 37 H 1.08000 * 120.00632 * 359.97438 * 16 15 14 38 38 H 1.07999 * 120.00226 * 180.02562 * 17 16 15 39 39 H 1.09011 * 109.45898 * 294.17554 * 20 19 18 40 40 H 1.08996 * 109.46301 * 54.14113 * 20 19 18 41 41 H 1.09002 * 109.50098 * 299.24123 * 21 20 19 42 42 H 1.08996 * 109.53898 * 179.13520 * 21 20 19 43 43 H 1.08999 * 109.52464 * 62.25632 * 22 21 20 44 44 H 1.08997 * 109.46737 * 179.70960 * 23 22 21 45 45 H 1.08999 * 109.46749 * 299.71902 * 23 22 21 46 46 H 1.09000 * 109.46699 * 59.71446 * 23 22 21 47 47 H 1.09004 * 109.50745 * 297.71190 * 24 22 21 48 48 H 1.09002 * 109.53686 * 177.61650 * 24 22 21 49 49 H 1.09001 * 109.46456 * 305.84997 * 25 19 18 50 50 H 1.08998 * 109.46607 * 65.83752 * 25 19 18 51 51 H 1.07995 * 119.99589 * 179.74208 * 26 18 17 52 52 H 1.07999 * 120.00009 * 180.28115 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0801 0.9743 2.3757 7 6 1.9924 -0.4020 3.7283 8 7 2.6756 -1.5191 3.8513 9 14 1.4977 0.5625 5.2497 10 1 0.7415 1.7742 4.8433 11 1 0.6435 -0.2867 6.1181 12 1 2.7156 0.9671 5.9969 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0352 -2.4423 15 6 2.0089 -0.4312 -3.7134 16 6 1.6411 0.2856 -4.8443 17 6 1.9931 -0.1741 -6.0980 18 6 2.7144 -1.3536 -6.2276 19 7 3.0708 -1.8200 -7.4987 20 6 1.8871 -1.9738 -8.3538 21 6 2.3256 -2.3434 -9.7726 22 6 3.1218 -3.6507 -9.7312 23 6 3.6150 -3.9954 -11.1381 24 6 4.3220 -3.4787 -8.7961 25 6 3.8251 -3.0765 -7.4056 26 6 3.0775 -2.0733 -5.0969 27 6 2.7301 -1.6108 -3.8430 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6055 -1.7197 1.2953 32 1 3.1264 -0.7994 1.2056 33 1 2.9228 -1.8420 4.7319 34 1 1.6054 -1.7198 -1.2951 35 1 3.1263 -0.7995 -1.2055 36 1 1.1483 0.8589 -2.3519 37 1 1.0797 1.2027 -4.7435 38 1 1.7074 0.3836 -6.9776 39 1 1.2499 -2.7626 -7.9536 40 1 1.3321 -1.0360 -8.3779 41 1 2.9516 -1.5488 -10.1786 42 1 1.4465 -2.4727 -10.4039 43 1 2.4843 -4.4540 -9.3618 44 1 4.1858 -4.9233 -11.1057 45 1 2.7599 -4.1175 -11.8029 46 1 4.2505 -3.1906 -11.5075 47 1 4.9795 -2.7020 -9.1868 48 1 4.8695 -4.4189 -8.7290 49 1 4.6781 -2.9398 -6.7410 50 1 3.1785 -3.8599 -7.0103 51 1 3.6349 -2.9927 -5.1980 52 1 3.0164 -2.1681 -2.9634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876839522.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:11 Heat of formation + Delta-G solvation = -11.029743 kcal Electronic energy + Delta-G solvation = -25735.382559 eV Core-core repulsion = 22311.536310 eV Total energy + Delta-G solvation = -3423.846249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25260 -39.56629 -37.96550 -36.09210 -34.76688 -33.46181 -32.50490 -31.28079 -30.10925 -28.87844 -27.86119 -26.61833 -25.10643 -24.55054 -23.54079 -22.58461 -21.64332 -20.84108 -20.50849 -18.56615 -18.55035 -17.57309 -16.79607 -16.47227 -16.03115 -15.81905 -15.74249 -15.53974 -15.08660 -14.94555 -14.60768 -14.51982 -14.39524 -14.26775 -14.09757 -13.91784 -13.44147 -13.35503 -13.24807 -13.07056 -12.80530 -12.68571 -12.66862 -12.53622 -12.27890 -12.14452 -12.06017 -11.81891 -11.73480 -11.59031 -11.23487 -11.17893 -11.12128 -11.02648 -10.97098 -10.55543 -9.84579 -9.62122 -8.18936 -7.87085 -6.28129 0.53717 0.72613 1.39731 1.40523 1.52976 2.40185 2.61672 2.80561 3.09009 3.15079 3.80135 3.85571 3.91999 4.01567 4.07209 4.11353 4.17969 4.25934 4.36366 4.38605 4.45822 4.51671 4.59265 4.64058 4.68165 4.76379 4.77561 4.80351 4.83281 4.88540 4.91725 4.93501 5.01704 5.11057 5.11492 5.18589 5.21584 5.27226 5.29269 5.34068 5.39826 5.43602 5.44338 5.51221 5.55068 5.56308 5.75598 5.82822 5.85330 6.21422 6.24284 6.35446 6.56833 6.87513 6.97395 7.40382 8.93265 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.036273 B = 0.001887 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.743258 B =14836.515215 C =15368.671757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.934 5.934 9 Si 0.962 3.038 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.145 3.855 14 N -0.742 5.742 15 C 0.186 3.814 16 C -0.176 4.176 17 C -0.091 4.091 18 C 0.038 3.962 19 N -0.488 5.488 20 C 0.056 3.944 21 C -0.108 4.108 22 C -0.096 4.096 23 C -0.142 4.142 24 C -0.108 4.108 25 C 0.049 3.951 26 C -0.126 4.126 27 C -0.191 4.191 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.048 0.952 31 H -0.007 1.007 32 H -0.010 1.010 33 H 0.262 0.738 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.403 0.597 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.031 0.969 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.038 0.962 51 H 0.131 0.869 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 -1.858 -30.234 30.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.104 4.104 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.082 0.918 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.207 1.207 13 C 0.020 3.980 14 N -0.372 5.372 15 C 0.082 3.918 16 C -0.199 4.199 17 C -0.112 4.112 18 C -0.060 4.060 19 N -0.205 5.205 20 C -0.070 4.070 21 C -0.146 4.146 22 C -0.114 4.114 23 C -0.199 4.199 24 C -0.146 4.146 25 C -0.078 4.078 26 C -0.147 4.147 27 C -0.215 4.215 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.012 0.988 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.239 0.761 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.094 0.906 50 H 0.056 0.944 51 H 0.149 0.851 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.638 -1.769 -30.247 30.306 hybrid contribution -0.471 -0.177 1.899 1.964 sum -1.109 -1.946 -28.348 28.437 Atomic orbital electron populations 1.21622 0.94457 1.00966 1.01051 1.21204 0.96730 0.99163 0.93286 0.91893 1.18969 0.94439 0.94768 0.92236 1.21652 1.34497 1.08632 0.91931 0.91848 1.25951 0.95274 0.96091 1.02688 1.70107 1.40233 1.22910 1.24250 0.85444 0.78010 0.78888 0.78985 1.18481 1.20613 1.20698 1.21166 0.98024 0.94722 0.84039 1.44739 1.62380 1.28206 1.01911 1.18047 0.94535 0.93531 0.85686 1.20657 1.06468 1.02072 0.90746 1.20673 0.98483 0.94846 0.97175 1.18843 1.01641 0.96613 0.88897 1.59337 1.22377 1.29226 1.09543 1.22289 0.90107 1.01207 0.93395 1.21664 1.00586 0.97515 0.94786 1.21208 0.96571 0.97349 0.96295 1.21769 1.01318 1.01567 0.95270 1.21660 0.97861 1.01795 0.93253 1.22271 0.97682 0.89034 0.98812 1.21166 1.02193 0.99777 0.91575 1.20646 1.05023 0.97940 0.97881 0.91698 0.94106 0.93285 0.98824 0.99194 0.92940 0.93419 0.93908 0.76070 0.84485 0.84342 0.95027 0.89873 0.91205 0.90036 0.91718 0.92347 0.92141 0.92555 0.91394 0.90296 0.90636 0.94352 0.85124 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 8.88 71.98 0.64 -3.73 16 2 C -0.08 -3.33 2.37 -10.79 -0.03 -3.35 16 3 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.03 1.72 4.45 29.85 0.13 1.86 16 5 C -0.53 -29.35 8.41 25.60 0.22 -29.14 16 6 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 9 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.15 4.98 4.30 86.38 0.37 5.35 16 14 N -0.74 -21.29 5.47 -339.23 -1.86 -23.15 16 15 C 0.19 5.19 6.66 38.13 0.25 5.45 16 16 C -0.18 -4.18 9.89 22.38 0.22 -3.96 16 17 C -0.09 -2.02 9.16 22.39 0.20 -1.82 16 18 C 0.04 0.89 5.65 38.13 0.22 1.11 16 19 N -0.49 -9.58 4.71 -695.16 -3.27 -12.85 16 20 C 0.06 0.89 5.26 86.32 0.45 1.35 16 21 C -0.11 -1.31 5.38 30.65 0.16 -1.15 16 22 C -0.10 -1.12 2.79 -10.71 -0.03 -1.15 16 23 C -0.14 -1.31 9.21 71.99 0.66 -0.65 16 24 C -0.11 -1.44 5.38 30.65 0.16 -1.27 16 25 C 0.05 0.85 4.15 86.33 0.36 1.21 16 26 C -0.13 -3.19 8.82 22.38 0.20 -2.99 16 27 C -0.19 -5.50 9.31 22.38 0.21 -5.29 16 28 H 0.06 1.84 7.18 -2.39 -0.02 1.83 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.86 6.95 -2.38 -0.02 1.85 16 31 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 33 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.05 1.68 7.95 -2.39 -0.02 1.66 16 35 H 0.04 1.56 7.95 -2.39 -0.02 1.54 16 36 H 0.40 10.27 7.67 -92.71 -0.71 9.56 16 37 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.14 2.47 7.15 -2.91 -0.02 2.45 16 39 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.08 1.24 6.70 -2.39 -0.02 1.23 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 48 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.08 1.37 6.99 -2.39 -0.02 1.36 16 50 H 0.04 0.68 7.73 -2.39 -0.02 0.67 16 51 H 0.13 2.93 5.80 -2.91 -0.02 2.91 16 52 H 0.11 3.35 6.73 -2.91 -0.02 3.33 16 Total: -1.00 -63.19 397.90 2.22 -60.97 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.16 Total: 23.21 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 4.87 Total: -37.87 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -4.84 Total: -92.41 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -63.19 2.22 -60.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876839522.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.945 kcal (2) G-P(sol) polarization free energy of solvation -63.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds