Wall clock time and date at job start Tue Mar 31 2020 10:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38282 * 119.92169 * 2 1 4 4 C 1.38105 * 120.07230 * 180.02562 * 3 2 1 5 5 C 1.38912 * 119.92678 * 0.02562 * 4 3 2 6 6 N 1.39670 * 120.07765 * 179.97438 * 5 4 3 7 7 C 1.46843 * 111.00178 * 303.95679 * 6 5 4 8 8 C 1.53041 * 109.52241 * 185.83494 * 7 6 5 9 9 C 1.53117 * 109.27826 * 300.82112 * 8 7 6 10 10 C 1.53117 * 109.16334 * 57.65523 * 9 8 7 11 11 H 1.09007 * 109.50097 * 62.32268 * 10 9 8 12 12 N 1.46898 * 109.50481 * 182.40493 * 10 9 8 13 13 C 1.46907 * 110.99723 * 274.99947 * 12 10 9 14 14 C 1.52998 * 109.46923 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.47193 * 305.00000 * 14 13 12 16 16 C 1.52998 * 109.47270 * 64.99762 * 14 13 12 17 17 C 1.53001 * 109.47197 * 184.99875 * 14 13 12 18 18 C 1.50694 * 109.47168 * 175.00067 * 17 14 13 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 17 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.46858 * 110.99647 * 68.16684 * 6 5 4 27 27 C 1.38913 * 119.84647 * 0.24887 * 5 4 3 28 28 C 1.38105 * 119.92784 * 359.49312 * 27 5 4 29 29 H 1.08996 * 109.46914 * 90.00214 * 1 2 3 30 30 H 1.09005 * 109.46936 * 209.99758 * 1 2 3 31 31 H 1.09001 * 109.47110 * 329.99933 * 1 2 3 32 32 H 1.08001 * 119.96772 * 0.04815 * 3 2 1 33 33 H 1.08002 * 120.03581 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.46220 * 65.82368 * 7 6 5 35 35 H 1.08994 * 109.46411 * 305.85233 * 7 6 5 36 36 H 1.08997 * 109.50153 * 180.87725 * 8 7 6 37 37 H 1.08996 * 109.50194 * 60.76456 * 8 7 6 38 38 H 1.09000 * 109.52361 * 297.74620 * 9 8 7 39 39 H 1.09008 * 109.52209 * 177.56095 * 9 8 7 40 40 H 1.00895 * 111.00459 * 151.04917 * 12 10 9 41 41 H 1.09007 * 109.47208 * 59.99959 * 13 12 10 42 42 H 1.09000 * 109.47152 * 299.99818 * 13 12 10 43 43 H 1.09007 * 109.47149 * 60.00032 * 16 14 13 44 44 H 1.08997 * 109.47437 * 179.97438 * 16 14 13 45 45 H 1.08995 * 109.47676 * 300.00328 * 16 14 13 46 46 H 1.09007 * 109.46922 * 54.99769 * 17 14 13 47 47 H 1.09003 * 109.46836 * 295.00525 * 17 14 13 48 48 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.46004 * 54.14243 * 26 6 5 50 50 H 1.08998 * 109.45737 * 294.17301 * 26 6 5 51 51 H 1.08004 * 120.03293 * 179.72707 * 27 5 4 52 52 H 1.07999 * 119.96286 * 180.25475 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5779 1.2021 -0.0005 5 6 4.2741 0.0001 -0.0016 6 7 5.6708 0.0001 -0.0027 7 6 6.1962 0.7663 -1.1398 8 6 7.7191 0.6241 -1.1924 9 6 8.3206 1.1414 0.1171 10 6 7.7208 0.3595 1.2891 11 1 7.9846 -0.6941 1.1967 12 7 8.2497 0.8885 2.5534 13 6 9.5406 0.2699 2.8838 14 6 10.0587 0.8451 4.2035 15 1 10.1027 1.9320 4.1337 16 6 9.1154 0.4449 5.3397 17 6 11.4584 0.2950 4.4850 18 6 12.0184 0.9542 5.7191 19 1 11.4343 1.6914 6.2498 20 6 13.2765 0.6161 6.1706 21 7 13.9877 -0.2821 5.5246 22 14 13.9709 1.4337 7.6999 23 1 15.3294 0.8996 7.9732 24 1 14.0493 2.9008 7.4845 25 1 13.0858 1.1500 8.8581 26 6 6.1980 0.5094 1.2698 27 6 3.5779 -1.2020 -0.0074 28 6 2.1969 -1.1985 -0.0014 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6550 2.1328 0.0008 33 1 4.1160 2.1385 -0.0010 34 1 5.9335 1.8176 -1.0218 35 1 5.7637 0.3857 -2.0651 36 1 8.1102 1.2056 -2.0273 37 1 7.9822 -0.4254 -1.3243 38 1 8.0906 2.2008 0.2303 39 1 9.4016 1.0020 0.1015 40 1 7.5864 0.7635 3.3034 41 1 10.2577 0.4795 2.0901 42 1 9.4123 -0.8080 2.9824 43 1 9.0714 -0.6421 5.4095 44 1 9.4848 0.8543 6.2799 45 1 8.1183 0.8367 5.1392 46 1 12.1084 0.5033 3.6351 47 1 11.4005 -0.7820 4.6427 48 1 14.8729 -0.5196 5.8421 49 1 5.7667 -0.0579 2.0946 50 1 5.9352 1.5619 1.3765 51 1 4.1162 -2.1384 -0.0127 52 1 1.6551 -2.1328 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877066980.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:34 Heat of formation + Delta-G solvation = 6.073112 kcal Electronic energy + Delta-G solvation = -26064.059351 eV Core-core repulsion = 22640.954738 eV Total energy + Delta-G solvation = -3423.104614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50603 -38.61623 -36.67477 -34.58052 -33.14748 -31.90244 -31.32507 -31.11912 -29.05564 -26.81286 -26.66033 -25.27126 -23.91169 -23.08401 -22.74734 -21.96300 -20.85808 -19.71964 -18.85315 -17.41716 -16.41189 -15.84851 -15.66371 -15.43025 -15.19891 -14.88906 -14.67795 -14.32921 -14.07303 -13.83747 -13.68220 -13.58178 -13.55051 -13.12254 -12.79816 -12.55111 -12.47938 -12.29067 -11.96957 -11.95050 -11.75267 -11.47171 -11.39498 -11.28356 -10.90130 -10.86395 -10.81692 -10.61155 -10.43408 -10.30809 -10.12817 -9.68386 -9.20664 -9.12720 -8.95017 -8.80273 -8.60752 -8.30377 -8.12632 -5.95197 -3.96284 0.98821 1.14151 3.36011 3.40246 3.41135 3.42902 3.51190 4.43016 4.51530 4.54196 4.58301 4.69320 4.73052 4.85007 4.90598 5.01805 5.10373 5.13717 5.23244 5.24328 5.31234 5.40176 5.40452 5.45925 5.55182 5.58887 5.69659 5.71422 5.76167 5.79363 5.85057 5.94209 5.95823 6.05749 6.08267 6.16263 6.24310 6.31286 6.32104 6.37930 6.49877 6.58746 6.60207 6.70673 6.99360 7.13420 7.20217 7.21679 7.42109 7.67999 7.72720 7.89085 8.05170 8.49025 9.09838 9.66783 11.16235 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.002105 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.001544 B =13297.098569 C =13923.912910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.112 4.112 4 C -0.144 4.144 5 C 0.088 3.912 6 N -0.502 5.502 7 C 0.061 3.939 8 C -0.117 4.117 9 C -0.109 4.109 10 C 0.090 3.910 11 H 0.051 0.949 12 N -0.686 5.686 13 C 0.067 3.933 14 C -0.084 4.084 15 H 0.065 0.935 16 C -0.134 4.134 17 C 0.028 3.972 18 C -0.513 4.513 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.890 3.110 23 H -0.288 1.288 24 H -0.277 1.277 25 H -0.278 1.278 26 C 0.063 3.937 27 C -0.092 4.092 28 C -0.116 4.116 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.337 0.663 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.041 0.959 44 H 0.062 0.938 45 H 0.031 0.969 46 H 0.015 0.985 47 H 0.014 0.986 48 H 0.260 0.740 49 H 0.072 0.928 50 H 0.046 0.954 51 H 0.129 0.871 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.384 0.312 -15.308 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.164 4.164 5 C -0.006 4.006 6 N -0.224 5.224 7 C -0.066 4.066 8 C -0.155 4.155 9 C -0.148 4.148 10 C -0.020 4.020 11 H 0.069 0.931 12 N -0.318 5.318 13 C -0.062 4.062 14 C -0.103 4.103 15 H 0.083 0.917 16 C -0.191 4.191 17 C -0.009 4.009 18 C -0.551 4.551 19 H 0.074 0.926 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.718 3.282 23 H -0.214 1.214 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.064 4.064 27 C -0.111 4.111 28 C -0.134 4.134 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.156 0.844 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.033 0.967 47 H 0.032 0.968 48 H 0.069 0.931 49 H 0.091 0.909 50 H 0.064 0.936 51 H 0.147 0.853 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.736 0.286 -15.640 29.267 hybrid contribution 0.025 0.340 1.233 1.279 sum -24.711 0.626 -14.407 28.611 Atomic orbital electron populations 1.20789 0.91244 1.02778 1.02245 1.19950 0.96084 0.93198 1.00104 1.20898 0.93797 0.97542 1.00824 1.21680 0.94928 0.98329 1.01490 1.18819 0.88649 0.92728 1.00410 1.59499 1.04000 1.55347 1.03530 1.22163 0.95922 0.95531 0.92937 1.21608 0.93672 1.02267 0.97996 1.21592 1.00458 0.99980 0.92741 1.21472 0.91937 0.97423 0.91189 0.93089 1.60618 1.06046 1.61022 1.04146 1.22170 0.89658 0.95417 0.98922 1.21221 0.97606 1.00266 0.91205 0.91699 1.21739 0.97073 1.00135 1.00172 1.19103 0.89176 0.96082 0.96554 1.21203 1.00508 1.22765 1.10656 0.92639 1.25028 0.97172 0.95297 0.97102 1.69959 1.11503 1.32232 1.39949 0.86686 0.78077 0.79765 0.83624 1.21394 1.20291 1.20339 1.22264 0.95120 0.98640 0.90343 1.21062 0.93455 0.97613 0.98958 1.20992 0.93884 0.97563 1.00984 0.91250 0.91528 0.91613 0.86227 0.86299 0.94416 0.90786 0.91149 0.91078 0.91566 0.91405 0.84351 0.91469 0.95773 0.94031 0.91896 0.95013 0.96682 0.96771 0.93066 0.90904 0.93597 0.85346 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.09 -0.76 5.88 -104.59 -0.62 -1.37 16 3 C -0.11 -0.96 9.69 -39.61 -0.38 -1.34 16 4 C -0.14 -1.39 8.74 -39.38 -0.34 -1.73 16 5 C 0.09 0.91 4.68 -83.79 -0.39 0.52 16 6 N -0.50 -5.44 4.62 -171.15 -0.79 -6.23 16 7 C 0.06 0.60 5.06 -3.83 -0.02 0.58 16 8 C -0.12 -1.16 6.09 -26.65 -0.16 -1.33 16 9 C -0.11 -1.31 5.49 -26.61 -0.15 -1.46 16 10 C 0.09 1.16 2.66 -67.64 -0.18 0.98 16 11 H 0.05 0.72 7.80 -51.92 -0.41 0.31 16 12 N -0.69 -10.14 6.31 -106.63 -0.67 -10.81 16 13 C 0.07 1.17 4.94 -3.82 -0.02 1.16 16 14 C -0.08 -1.73 2.54 -90.62 -0.23 -1.96 16 15 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 16 C -0.13 -2.52 8.77 37.16 0.33 -2.19 16 17 C 0.03 0.73 4.45 -27.89 -0.12 0.61 16 18 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 19 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 20 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 22 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.06 0.73 4.49 -3.83 -0.02 0.71 16 27 C -0.09 -0.89 9.97 -39.38 -0.39 -1.28 16 28 C -0.12 -0.97 9.69 -39.61 -0.38 -1.35 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.12 1.09 7.13 -52.49 -0.37 0.72 16 34 H 0.04 0.36 7.15 -51.93 -0.37 -0.01 16 35 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.89 7.52 -51.92 -0.39 0.50 16 40 H 0.34 4.76 6.61 -39.29 -0.26 4.51 16 41 H 0.07 1.22 7.49 -51.93 -0.39 0.83 16 42 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 43 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 44 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 45 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 46 H 0.01 0.41 8.14 -51.92 -0.42 -0.01 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 50 H 0.05 0.54 7.79 -51.93 -0.40 0.14 16 51 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 52 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 402.32 15.07 6.06 6.06 Total: -1.00 -29.98 402.32 -12.35 -42.34 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -9.56 Total: 1.24 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -3.11 Total: -23.03 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -0.73 Total: -43.45 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.98 -12.35 -42.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877066980.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.410 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds