Wall clock time and date at job start Tue Mar 31 2020 10:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38282 * 119.92169 * 2 1 4 4 C 1.38105 * 120.07230 * 180.02562 * 3 2 1 5 5 C 1.38912 * 119.92678 * 0.02562 * 4 3 2 6 6 N 1.39670 * 120.07765 * 179.97438 * 5 4 3 7 7 C 1.46843 * 111.00178 * 303.95679 * 6 5 4 8 8 C 1.53041 * 109.52241 * 185.83494 * 7 6 5 9 9 C 1.53117 * 109.27826 * 300.82112 * 8 7 6 10 10 C 1.53117 * 109.16334 * 57.65523 * 9 8 7 11 11 H 1.09007 * 109.50097 * 62.32268 * 10 9 8 12 12 N 1.46898 * 109.50481 * 182.40493 * 10 9 8 13 13 C 1.46907 * 110.99723 * 274.99947 * 12 10 9 14 14 C 1.52998 * 109.46923 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.47193 * 305.00000 * 14 13 12 16 16 C 1.52998 * 109.47270 * 64.99762 * 14 13 12 17 17 C 1.53001 * 109.47197 * 184.99875 * 14 13 12 18 18 C 1.50694 * 109.47168 * 175.00067 * 17 14 13 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 17 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.46858 * 110.99647 * 68.16684 * 6 5 4 27 27 C 1.38913 * 119.84647 * 0.24887 * 5 4 3 28 28 C 1.38105 * 119.92784 * 359.49312 * 27 5 4 29 29 H 1.08996 * 109.46914 * 90.00214 * 1 2 3 30 30 H 1.09005 * 109.46936 * 209.99758 * 1 2 3 31 31 H 1.09001 * 109.47110 * 329.99933 * 1 2 3 32 32 H 1.08001 * 119.96772 * 0.04815 * 3 2 1 33 33 H 1.08002 * 120.03581 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.46220 * 65.82368 * 7 6 5 35 35 H 1.08994 * 109.46411 * 305.85233 * 7 6 5 36 36 H 1.08997 * 109.50153 * 180.87725 * 8 7 6 37 37 H 1.08996 * 109.50194 * 60.76456 * 8 7 6 38 38 H 1.09000 * 109.52361 * 297.74620 * 9 8 7 39 39 H 1.09008 * 109.52209 * 177.56095 * 9 8 7 40 40 H 1.00895 * 111.00459 * 151.04917 * 12 10 9 41 41 H 1.09007 * 109.47208 * 59.99959 * 13 12 10 42 42 H 1.09000 * 109.47152 * 299.99818 * 13 12 10 43 43 H 1.09007 * 109.47149 * 60.00032 * 16 14 13 44 44 H 1.08997 * 109.47437 * 179.97438 * 16 14 13 45 45 H 1.08995 * 109.47676 * 300.00328 * 16 14 13 46 46 H 1.09007 * 109.46922 * 54.99769 * 17 14 13 47 47 H 1.09003 * 109.46836 * 295.00525 * 17 14 13 48 48 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.46004 * 54.14243 * 26 6 5 50 50 H 1.08998 * 109.45737 * 294.17301 * 26 6 5 51 51 H 1.08004 * 120.03293 * 179.72707 * 27 5 4 52 52 H 1.07999 * 119.96286 * 180.25475 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5779 1.2021 -0.0005 5 6 4.2741 0.0001 -0.0016 6 7 5.6708 0.0001 -0.0027 7 6 6.1962 0.7663 -1.1398 8 6 7.7191 0.6241 -1.1924 9 6 8.3206 1.1414 0.1171 10 6 7.7208 0.3595 1.2891 11 1 7.9846 -0.6941 1.1967 12 7 8.2497 0.8885 2.5534 13 6 9.5406 0.2699 2.8838 14 6 10.0587 0.8451 4.2035 15 1 10.1027 1.9320 4.1337 16 6 9.1154 0.4449 5.3397 17 6 11.4584 0.2950 4.4850 18 6 12.0184 0.9542 5.7191 19 1 11.4343 1.6914 6.2498 20 6 13.2765 0.6161 6.1706 21 7 13.9877 -0.2821 5.5246 22 14 13.9709 1.4337 7.6999 23 1 15.3294 0.8996 7.9732 24 1 14.0493 2.9008 7.4845 25 1 13.0858 1.1500 8.8581 26 6 6.1980 0.5094 1.2698 27 6 3.5779 -1.2020 -0.0074 28 6 2.1969 -1.1985 -0.0014 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6550 2.1328 0.0008 33 1 4.1160 2.1385 -0.0010 34 1 5.9335 1.8176 -1.0218 35 1 5.7637 0.3857 -2.0651 36 1 8.1102 1.2056 -2.0273 37 1 7.9822 -0.4254 -1.3243 38 1 8.0906 2.2008 0.2303 39 1 9.4016 1.0020 0.1015 40 1 7.5864 0.7635 3.3034 41 1 10.2577 0.4795 2.0901 42 1 9.4123 -0.8080 2.9824 43 1 9.0714 -0.6421 5.4095 44 1 9.4848 0.8543 6.2799 45 1 8.1183 0.8367 5.1392 46 1 12.1084 0.5033 3.6351 47 1 11.4005 -0.7820 4.6427 48 1 14.8729 -0.5196 5.8421 49 1 5.7667 -0.0579 2.0946 50 1 5.9352 1.5619 1.3765 51 1 4.1162 -2.1384 -0.0127 52 1 1.6551 -2.1328 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877066980.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:33 Heat of formation + Delta-G solvation = -9.685470 kcal Electronic energy + Delta-G solvation = -26064.742695 eV Core-core repulsion = 22640.954738 eV Total energy + Delta-G solvation = -3423.787957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28592 -39.49601 -38.02885 -35.90495 -34.55523 -33.51293 -32.00475 -31.78789 -30.33005 -28.62853 -27.38777 -26.77919 -24.90608 -24.28126 -23.75849 -23.08157 -21.64106 -20.88476 -20.33330 -18.52133 -18.20312 -16.83556 -16.60823 -16.52323 -16.26988 -16.14425 -15.80286 -15.58890 -15.10830 -14.78199 -14.60109 -14.50766 -14.41786 -14.24591 -14.00230 -13.95111 -13.64418 -13.42056 -13.28414 -13.02905 -12.76876 -12.68621 -12.62636 -12.39067 -12.34845 -12.23048 -12.03215 -11.96628 -11.78217 -11.66085 -11.44782 -11.38316 -11.05436 -10.90232 -10.52558 -9.87314 -9.56977 -9.40195 -9.31641 -8.16796 -6.26036 0.31416 0.47429 1.40243 1.43209 1.50832 2.42192 2.61816 2.78499 3.16281 3.34461 3.70905 3.88932 3.96201 4.02566 4.04777 4.09949 4.17362 4.23827 4.29674 4.34520 4.43337 4.47550 4.49331 4.52681 4.59952 4.69782 4.73496 4.77429 4.84256 4.86430 4.87847 4.92841 4.96117 5.02980 5.07948 5.14162 5.19412 5.21516 5.26005 5.37449 5.39612 5.41921 5.48259 5.55685 5.58886 5.69731 5.79859 5.84824 5.89719 5.94727 6.11645 6.31530 6.45051 6.49878 6.89620 7.41929 8.95002 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.002105 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.001544 B =13297.098569 C =13923.912910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.119 4.119 4 C -0.152 4.152 5 C 0.069 3.931 6 N -0.507 5.507 7 C 0.063 3.937 8 C -0.110 4.110 9 C -0.107 4.107 10 C 0.093 3.907 11 H 0.039 0.961 12 N -0.682 5.682 13 C 0.082 3.918 14 C -0.075 4.075 15 H 0.057 0.943 16 C -0.126 4.126 17 C 0.033 3.967 18 C -0.529 4.529 19 H 0.061 0.939 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.962 3.038 23 H -0.285 1.285 24 H -0.268 1.268 25 H -0.267 1.267 26 C 0.073 3.927 27 C -0.104 4.104 28 C -0.119 4.119 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.120 0.880 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.344 0.656 41 H 0.056 0.944 42 H 0.021 0.979 43 H 0.039 0.961 44 H 0.046 0.954 45 H 0.066 0.934 46 H -0.014 1.014 47 H -0.011 1.011 48 H 0.262 0.738 49 H 0.070 0.930 50 H 0.045 0.955 51 H 0.128 0.872 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.666 1.165 -15.213 31.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.172 4.172 5 C -0.024 4.024 6 N -0.229 5.229 7 C -0.063 4.063 8 C -0.148 4.148 9 C -0.146 4.146 10 C -0.017 4.017 11 H 0.057 0.943 12 N -0.315 5.315 13 C -0.048 4.048 14 C -0.094 4.094 15 H 0.076 0.924 16 C -0.184 4.184 17 C -0.004 4.004 18 C -0.567 4.567 19 H 0.080 0.920 20 C -0.201 4.201 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.210 1.210 24 H -0.193 1.193 25 H -0.192 1.192 26 C -0.053 4.053 27 C -0.123 4.123 28 C -0.138 4.138 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.154 0.846 33 H 0.138 0.862 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.163 0.837 41 H 0.075 0.925 42 H 0.039 0.961 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.007 0.993 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.063 0.937 51 H 0.146 0.854 52 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -27.045 1.147 -15.552 31.219 hybrid contribution 0.679 0.050 1.146 1.333 sum -26.366 1.196 -14.406 30.069 Atomic orbital electron populations 1.20837 0.89370 1.03624 1.03101 1.20296 0.97535 0.92875 0.98904 1.21161 0.93543 0.98603 1.00403 1.21745 0.95547 0.98052 1.01847 1.18911 0.88313 0.93369 1.01849 1.59470 1.04647 1.55507 1.03266 1.22168 0.95510 0.95685 0.92944 1.21566 0.93874 1.02099 0.97303 1.21564 0.99626 0.99795 0.93571 1.21473 0.93111 0.96730 0.90383 0.94261 1.60553 1.05090 1.60675 1.05184 1.21844 0.90934 0.95049 0.96926 1.21012 0.95217 0.99491 0.93638 0.92445 1.21648 0.98256 1.00081 0.98391 1.18995 0.91923 0.94581 0.94928 1.21610 1.00937 1.22855 1.11345 0.92048 1.25979 0.97665 0.95911 1.00569 1.70101 1.11921 1.33734 1.41812 0.85544 0.77328 0.78916 0.79522 1.21044 1.19291 1.19186 1.22088 0.93721 0.98551 0.90990 1.21187 0.94221 0.97424 0.99460 1.21251 0.93494 0.98666 1.00361 0.90282 0.90656 0.90858 0.84583 0.86233 0.94077 0.90044 0.89453 0.91581 0.91747 0.92855 0.83666 0.92511 0.96125 0.94178 0.93512 0.91522 0.99561 0.99291 0.92965 0.91166 0.93667 0.85438 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 71.24 0.71 -0.26 16 2 C -0.10 -1.36 5.88 -19.84 -0.12 -1.48 16 3 C -0.12 -1.82 9.69 22.25 0.22 -1.61 16 4 C -0.15 -2.74 8.74 22.40 0.20 -2.55 16 5 C 0.07 1.38 4.68 38.22 0.18 1.56 16 6 N -0.51 -10.60 4.62 -695.39 -3.21 -13.81 16 7 C 0.06 1.17 5.06 86.33 0.44 1.60 16 8 C -0.11 -2.09 6.09 30.65 0.19 -1.91 16 9 C -0.11 -2.54 5.49 30.67 0.17 -2.38 16 10 C 0.09 2.36 2.66 44.97 0.12 2.48 16 11 H 0.04 1.11 7.80 -2.38 -0.02 1.09 16 12 N -0.68 -19.79 6.31 -491.28 -3.10 -22.88 16 13 C 0.08 2.91 4.94 86.30 0.43 3.33 16 14 C -0.07 -3.11 2.54 -10.79 -0.03 -3.14 16 15 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 16 C -0.13 -4.67 8.77 71.98 0.63 -4.04 16 17 C 0.03 1.78 4.45 29.85 0.13 1.92 16 18 C -0.53 -30.33 8.41 25.60 0.22 -30.11 16 19 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 20 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 21 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 22 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.07 1.64 4.49 86.32 0.39 2.02 16 27 C -0.10 -1.92 9.97 22.40 0.22 -1.69 16 28 C -0.12 -1.80 9.69 22.25 0.22 -1.58 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.53 8.08 -2.38 -0.02 0.51 16 31 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 32 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.12 2.06 7.13 -2.91 -0.02 2.04 16 34 H 0.04 0.74 7.15 -2.39 -0.02 0.72 16 35 H 0.08 1.40 8.11 -2.39 -0.02 1.38 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.41 7.52 -2.38 -0.02 1.39 16 40 H 0.34 9.22 6.61 -89.70 -0.59 8.63 16 41 H 0.06 2.13 7.49 -2.38 -0.02 2.11 16 42 H 0.02 0.75 8.06 -2.39 -0.02 0.73 16 43 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.05 1.87 6.95 -2.39 -0.02 1.85 16 45 H 0.07 1.99 6.68 -2.39 -0.02 1.97 16 46 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 47 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 48 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 49 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 50 H 0.05 1.02 7.79 -2.39 -0.02 1.00 16 51 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 52 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -65.09 402.32 1.04 -64.05 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.27 Total: 20.82 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 4.76 Total: -37.60 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -6.03 Total: -94.27 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -65.09 1.04 -64.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877066980.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.369 kcal (2) G-P(sol) polarization free energy of solvation -65.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds